Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003185

Physical Location & Seq

Genomic Coordinates Forward (+)

15172717 .. 15174074

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGACGACCAGGAGGTGTTTCCGGGTGCAAACATGGGCGGTGAACTTGCGAGTAGTTGCTCAATGGACAGCTTCTTCGATGACCTGCTTAAGGACACTCATGCTTGCACTCACGCCCACACTTGCAACCCACCGGGCCCTGATTACTCCCACACACACACTTGCTTTCATGTGCACACTAAAATTCTGTCTTCAGCGAGTGAAGACAAGGCCGGAACTGATGATACTGCTGAATCTGGGGAAAAGAAATCAAAGAAGCAGCCTTTGGGTAATAAGGTAGCAGTTCGTAAGTACCGCGAGAAGGAGAAGGCGCGGGTTAAGTTGTTGGAGGATGAAGTTTTGAATTTGAGAGCTGAAAATCGGCGGTTGGTGATGAGGTTGCAGGGTCAGCCTGCATTGGAGGCTGAGATTGCTAGGCTCAAGTGTTTGCTTGTTGACATTCGAGGAAGGATTGAAGGAGAAATTGGATCTTTTCCATATCAGAAATCAGTGAATCCGAGCCTGCCCAACCCAAATATGCCCGGTGCCATTTTTATGAATCCGTGTAATGTCCAATGTGATGATCAGCTTTACTGCCTTCATCCAGGGATGGATGGGAAATGTGGAGATGGTGCAGTGATGAATGGGCAGGATTTTAACGGCTGTGGTTTTGAGAGTCTTCAGTGTTTTGCTAATCAGGATGGAGGAGCCAAGGAGCTTCCTGATTGTGGAGTTGGAAATGGGGTGTCGAATGTCAATTCTTCCGGCACAAGTAAGAGGAAAAGAGGGACTCGAGCCGCAGCAGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

264

Amino Acids

28.43

Weight (kDa)

6.07

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16770 AT2G16770 AT4G35040 AT4G35040 AT4G35040 AT4G35040
fragaria_vesca	FvH4_2g01190 FvH4_2g01190 FvH4_2g01190
malus_domestica	MD05G1121500.v1.1 MD10G1124200.v1.1
prunus_persica	Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1
pyrus_communis	pycom05g11560
rosa_chinensis	RchiOBHm_Chr6g0251821
rosa_laevigata	RLG00000015427
rosa_multiflora	Rmu_co8227239.1_g000001 Rmu_sc0003965.1_g000002 Rmu_ssc0000213.1_g000117
rosa_roxburghii	Rroxscaffold_7G00216360
rosa_rugosa	Rorug05G0504100 Rorug05G0504200 Rorug05G0504300 Rorug05G0504400 Rorug05G0504500 Rorug05G0504600
rosa_samantha	Rh6AG015100 Rh6BG013400 Rh6CG010400 Rh6DG011600
rosa_wichuraiana	Rw6G001480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	524
AccII	CGCG	2 cut(s)	297, 313
AciI	CCGC	5 cut(s)	39, 295, 313, 364, 777
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	2 cut(s)	183, 343
AcuI	CTGAAG	2 cut(s)	177, 644
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	3 cut(s)	91, 301, 707
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	343, 455
AjnI	CCWGG	2 cut(s)	9, 583
AjuI	GAANNNNNNNTTGG	4 cut(s)	248, 280, 447, 479
AluBI	AGCT	4 cut(s)	72, 353, 568, 697
AluI	AGCT	4 cut(s)	72, 353, 568, 697
Alw21I	GWGCWC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	771
AoxI	GGCC	2 cut(s)	136, 210
ApaI	GGGCCC	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	259, 779, 782
ApoI	RAATTY	2 cut(s)	183, 343
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	136, 137
AsuC2I	CCSGG	3 cut(s)	24, 135, 522
AsuHPI	GGTGA	2 cut(s)	53, 382
AvaI	CYCGRG	1 cut(s)	771
BaeGI	GKGCMC	2 cut(s)	140, 177
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	140
BbsI	GAAGAC	3 cut(s)	183, 210, 650
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	4 cut(s)	583, 587, 602, 674
BceAI	ACGGC	1 cut(s)	655
BciT130I	CCWGG	2 cut(s)	11, 585
BclI	TGATCA	1 cut(s)	562
BcnI	CCSGG	3 cut(s)	24, 135, 522
BfaI	CTAG	1 cut(s)	414
BfrI	CTTAAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	93
BisI	GCNGC	4 cut(s)	260, 777, 780, 783
BlsI	GCNGC	4 cut(s)	261, 778, 781, 784
Bme1390I	CCNGG	5 cut(s)	11, 24, 135, 522, 585
BmeT110I	CYCGRG	1 cut(s)	771
BmgT120I	GGNCC	2 cut(s)	136, 137
BmiI	GGNNCC	3 cut(s)	138, 526, 688
BmrFI	CCNGG	5 cut(s)	11, 24, 135, 522, 585
BpiI	GAAGAC	3 cut(s)	183, 210, 650
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	3 cut(s)	24, 135, 522
BsaJI	CCNNGG	2 cut(s)	584, 690
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 301, 707
BseBI	CCWGG	2 cut(s)	11, 585
BseDI	CCNNGG	2 cut(s)	584, 690
BseGI	GGATG	5 cut(s)	337, 580, 594, 598, 685
BseLI	CCNNNNNNNGG	3 cut(s)	91, 301, 707
BseMII	CTCAG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	699
BseSI	GKGCMC	2 cut(s)	140, 177
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	633
Bsh1236I	CGCG	2 cut(s)	297, 313
BshFI	GGCC	2 cut(s)	138, 212
BshNI	GGYRCC	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	771
BsiSI	CCGG	5 cut(s)	23, 134, 213, 522, 744
BslFI	GGGAC	1 cut(s)	781
BslI	CCNNNNNNNGG	3 cut(s)	91, 301, 707
BsmFI	GGGAC	1 cut(s)	781
BsnI	GGCC	2 cut(s)	138, 212
BsoBI	CYCGRG	1 cut(s)	771
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	140, 177
Bsp143I	GATC	2 cut(s)	467, 562
BspACI	CCGC	5 cut(s)	39, 295, 313, 364, 777
BspANI	GGCC	2 cut(s)	138, 212
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	2 cut(s)	297, 313
BspLI	GGNNCC	3 cut(s)	138, 526, 688
BspMI	ACCTGC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	584, 690
BssMI	GATC	2 cut(s)	467, 562
BssT1I	CCWWGG	1 cut(s)	690
Bst2UI	CCWGG	2 cut(s)	11, 585
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	106, 393, 503
BstDEI	CTNAG	1 cut(s)	405
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	5 cut(s)	337, 580, 594, 598, 685
BstFNI	CGCG	2 cut(s)	297, 313
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	2 cut(s)	470, 565
BstMBI	GATC	2 cut(s)	467, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	388, 401, 410, 782
BstNI	CCWGG	2 cut(s)	11, 585
BstSCI	CCNGG	5 cut(s)	9, 22, 133, 520, 583
BstSLI	GKGCMC	2 cut(s)	140, 177
BstUI	CGCG	2 cut(s)	297, 313
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	3 cut(s)	183, 210, 650
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	138, 212
BtsCI	GGATG	5 cut(s)	337, 580, 594, 598, 685
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	3 cut(s)	495, 621, 668
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	106, 393, 503
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	136, 137
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	34, 101, 170
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	2 cut(s)	469, 564
DpnII	GATC	2 cut(s)	467, 562
Eco130I	CCWWGG	1 cut(s)	690
Eco24I	GRGCYC	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	177, 644
Eco88I	CYCGRG	1 cut(s)	771
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	9, 583
EcoT14I	CCWWGG	1 cut(s)	690
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	3 cut(s)	37, 104, 173
FaiI	YATR	6 cut(s)	35, 102, 171, 478, 518, 536
FaqI	GGGAC	1 cut(s)	781
FatI	CATG	3 cut(s)	33, 100, 169
FauI	CCCGC	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	4 cut(s)	260, 777, 780, 783
FokI	GGATG	5 cut(s)	344, 567, 601, 605, 692
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	4 cut(s)	260, 777, 780, 783
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	4 cut(s)	260, 777, 780, 783
HaeIII	GGCC	2 cut(s)	138, 212
HapII	CCGG	5 cut(s)	23, 134, 213, 522, 744
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	3 cut(s)	37, 104, 173
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	5 cut(s)	233, 493, 538, 655, 769
HpaII	CCGG	5 cut(s)	23, 134, 213, 522, 744
HphI	GGTGA	2 cut(s)	53, 382
Hpy166II	GTNNAC	3 cut(s)	44, 175, 436
Hpy188I	TCNGA	2 cut(s)	483, 498
Hpy188III	TCNNGA	2 cut(s)	677, 701
Hpy8I	GTNNAC	3 cut(s)	44, 175, 436
HpyAV	CCTTC	5 cut(s)	295, 301, 441, 449, 587
HpyCH4V	TGCA	7 cut(s)	29, 108, 126, 175, 382, 395, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	388, 401, 410, 782
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	37, 104, 173
HspAI	GCGC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	467, 562
LmnI	GCTCC	2 cut(s)	686, 694
Lsp1109I	GCAGC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	414
MalI	GATC	2 cut(s)	469, 564
MboI	GATC	2 cut(s)	467, 562
MboII	GAAGA	5 cut(s)	67, 183, 215, 650, 732
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	2 cut(s)	140, 177
MluCI	AATT	4 cut(s)	183, 343, 462, 736
MlyI	GAGTC	2 cut(s)	664, 763
MmeI	TCCRAC	2 cut(s)	306, 694
MnlI	CCTC	8 cut(s)	7, 322, 369, 394, 437, 677, 750, 758
MseI	TTAA	3 cut(s)	90, 318, 636
MslI	CAYNNNNRTG	1 cut(s)	533
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	5 cut(s)	23, 134, 213, 522, 744
MspR9I	CCNGG	5 cut(s)	11, 24, 135, 522, 585
MvaI	CCWGG	2 cut(s)	11, 585
MvnI	CGCG	2 cut(s)	297, 313
MwoI	GCNNNNNNNGC	4 cut(s)	388, 401, 410, 782
NciI	CCSGG	3 cut(s)	24, 135, 522
NdeII	GATC	2 cut(s)	467, 562
NlaIII	CATG	3 cut(s)	37, 104, 173
NlaIV	GGNNCC	3 cut(s)	138, 526, 688
PaeR7I	CTCGAG	1 cut(s)	771
PfeI	GAWTC	3 cut(s)	233, 493, 538
PkrI	GCNGC	4 cut(s)	261, 778, 781, 784
PleI	GAGTC	2 cut(s)	663, 763
PpsI	GAGTC	2 cut(s)	663, 763
Psp6I	CCWGG	2 cut(s)	9, 583
PspGI	CCWGG	2 cut(s)	9, 583
PspN4I	GGNNCC	3 cut(s)	138, 526, 688
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	136, 137
PspXI	VCTCGAGB	1 cut(s)	771
PsrI	GAACNNNNNNTAC	2 cut(s)	208, 240
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	90, 318, 636
SatI	GCNGC	4 cut(s)	260, 777, 780, 783
Sau3AI	GATC	2 cut(s)	467, 562
Sau96I	GGNCC	2 cut(s)	136, 137
SchI	GAGTC	2 cut(s)	664, 763
ScrFI	CCNGG	5 cut(s)	11, 24, 135, 522, 585
SduI	GDGCHC	2 cut(s)	140, 177
SetI	ASST	8 cut(s)	18, 74, 87, 279, 355, 380, 570, 699
Sfr274I	CTCGAG	1 cut(s)	771
SlaI	CTCGAG	1 cut(s)	771
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	3 cut(s)	89, 419, 771
SmoI	CTYRAG	3 cut(s)	89, 419, 771
Sse9I	AATT	4 cut(s)	183, 343, 462, 736
SsiI	CCGC	5 cut(s)	39, 295, 313, 364, 777
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	5 cut(s)	9, 22, 133, 520, 583
StyI	CCWWGG	1 cut(s)	690
TaqI	TCGA	4 cut(s)	78, 442, 728, 772
TasI	AATT	4 cut(s)	183, 343, 462, 736
TauI	GCSGC	1 cut(s)	779
TfiI	GAWTC	3 cut(s)	233, 493, 538
Tru1I	TTAA	3 cut(s)	90, 318, 636
Tru9I	TTAA	3 cut(s)	90, 318, 636
TscAI	CASTG	3 cut(s)	495, 621, 668
TseI	GCWGC	3 cut(s)	259, 779, 782
TspDTI	ATGAA	5 cut(s)	158, 348, 551, 569, 635
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	3 cut(s)	495, 621, 668
Vha464I	CTTAAG	1 cut(s)	89
VneI	GTGCAC	1 cut(s)	173
XagI	CCTNNNNNAGG	1 cut(s)	89
XapI	RAATTY	2 cut(s)	183, 343
XhoI	CTCGAG	1 cut(s)	771
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.