Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003185

Physical Location & Seq

Genomic Coordinates Forward (+)

20292051 .. 20294225

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1124200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGACGACCACGAGGTTGATTTTTCGAACCAGGAGGTGTTTTCGCCTGCAAACATGGGCGGTGAACTTGCGAGTAGTTGTTCAATGGACACCTTCTTTGATGACCTGCTTAAGGACACTCACGCTTGCACTCACACCCACACTTGCAACCCCCCTGGCCCCGATTACTCCCACACACACACTTGCTTTCATGTCCACACTAAAATTGTGTCTTCAGCGAGTGAAAACAAGGCTGATGATACTTGTGAGTCTGGGGAAAAGAAATCAAAGAAGCAGCCTTTGGGTAATAAGCCTGCATTGGAGGCTGAGATTGCTAGGCTCAAGTGTTTGCTTGTTGACATTCGAGGAAGGATTGAAGGAGAAATTGGGTCTTTTCCATATCAGAAATCAGTGAATCCGAGCCTGCCCAACCCAAATCTGCCCAATGCCTTTTTTATGAATCCATGTAATGATGATCAGCTTTACTGCCCTCATCCAAGGATGGATGGGAAATGTGGAGATGGTGCAATGATGAATGGGCAGGATTTTAACGGCTGTGATTTTGAGAGTCTTCAGTGTTTGGTTAATCAGGATGGAGGATCCAAGGAGCTTCCTGGATGTGGGCCTGGAAATGGGGCGTCCAATGTAAATTCTTCTGGCACAAGCAAGAGGAAAAGAAGGATTCGAGCCGCAGCATCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

228

Amino Acids

24.57

Weight (kDa)

5.55

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16770 AT2G16770 AT4G35040 AT4G35040 AT4G35040 AT4G35040
fragaria_vesca	FvH4_2g01190 FvH4_2g01190 FvH4_2g01190
malus_domestica	MD05G1121500.v1.1 MD10G1124200.v1.1
prunus_persica	Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1
pyrus_communis	pycom05g11560
rosa_chinensis	RchiOBHm_Chr6g0251821
rosa_laevigata	RLG00000015427
rosa_multiflora	Rmu_co8227239.1_g000001 Rmu_sc0003965.1_g000002 Rmu_ssc0000213.1_g000117
rosa_roxburghii	Rroxscaffold_7G00216360
rosa_rugosa	Rorug05G0504100 Rorug05G0504200 Rorug05G0504300 Rorug05G0504400 Rorug05G0504500 Rorug05G0504600
rosa_samantha	Rh6AG015100 Rh6BG013400 Rh6CG010400 Rh6DG011600
rosa_wichuraiana	Rw6G001480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AciI	CCGC	2 cut(s)	60, 669
AclWI	GGATC	2 cut(s)	573, 586
AcsI	RAATTY	1 cut(s)	628
AcuI	CTGAAG	2 cut(s)	198, 536
AcyI	GRCGYC	1 cut(s)	617
AfiI	CCNNNNNNNGG	3 cut(s)	112, 599, 611
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	84, 356
AjnI	CCWGG	4 cut(s)	30, 154, 592, 604
AjuI	GAANNNNNNNTTGG	4 cut(s)	263, 295, 348, 380
AluBI	AGCT	2 cut(s)	460, 589
AluI	AGCT	2 cut(s)	460, 589
AlwI	GGATC	2 cut(s)	573, 586
AoxI	GGCC	2 cut(s)	157, 602
ApeKI	GCWGC	2 cut(s)	274, 671
ApoI	RAATTY	1 cut(s)	628
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspS9I	GGNCC	2 cut(s)	158, 602
AsuHPI	GGTGA	1 cut(s)	74
AsuII	TTCGAA	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	578
BauI	CACGAG	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	204, 542
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	4 cut(s)	475, 479, 494, 566
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	4 cut(s)	32, 156, 594, 606
BclI	TGATCA	1 cut(s)	454
BfaI	CTAG	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	3 cut(s)	275, 669, 672
BlsI	GCNGC	3 cut(s)	276, 670, 673
Bme1390I	CCNGG	4 cut(s)	32, 156, 594, 606
BmgT120I	GGNCC	2 cut(s)	158, 602
BmiI	GGNNCC	2 cut(s)	160, 580
BmrFI	CCNGG	4 cut(s)	32, 156, 594, 606
BpiI	GAAGAC	2 cut(s)	204, 542
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	617
BsaJI	CCNNGG	3 cut(s)	154, 476, 582
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 599, 611
Bse3DI	GCAATG	1 cut(s)	513
BseBI	CCWGG	4 cut(s)	32, 156, 594, 606
BseDI	CCNNGG	3 cut(s)	154, 476, 582
BseGI	GGATG	5 cut(s)	472, 486, 490, 577, 602
BseLI	CCNNNNNNNGG	3 cut(s)	112, 599, 611
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	286
BshFI	GGCC	2 cut(s)	159, 604
BslI	CCNNNNNNNGG	3 cut(s)	112, 599, 611
BsnI	GGCC	2 cut(s)	159, 604
Bsp119I	TTCGAA	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	454, 578
BspACI	CCGC	2 cut(s)	60, 669
BspANI	GGCC	2 cut(s)	159, 604
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	160, 580
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	573, 586
BspT104I	TTCGAA	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	513
BssECI	CCNNGG	3 cut(s)	154, 476, 582
BssMI	GATC	2 cut(s)	454, 578
BssNI	GRCGYC	1 cut(s)	617
BssSI	CACGAG	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	476, 582
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	4 cut(s)	32, 156, 594, 606
BstACI	GRCGYC	1 cut(s)	617
BstAFI	CTTAAG	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	4 cut(s)	48, 127, 294, 404
BstDEI	CTNAG	1 cut(s)	306
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	5 cut(s)	472, 486, 490, 577, 602
BstKTI	GATC	2 cut(s)	457, 581
BstMBI	GATC	2 cut(s)	454, 578
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 311
BstNI	CCWGG	4 cut(s)	32, 156, 594, 606
BstSCI	CCNGG	4 cut(s)	30, 154, 592, 604
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	2 cut(s)	204, 542
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	159, 604
BtsCI	GGATG	5 cut(s)	472, 486, 490, 577, 602
BtsIMutI	CAGTG	2 cut(s)	396, 560
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	4 cut(s)	48, 127, 294, 404
Cfr13I	GGNCC	2 cut(s)	158, 602
CseI	GACGC	1 cut(s)	606
CviAII	CATG	3 cut(s)	55, 191, 444
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	456, 580
DpnII	GATC	2 cut(s)	454, 578
Eco130I	CCWWGG	2 cut(s)	476, 582
Eco57I	CTGAAG	2 cut(s)	198, 536
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoRII	CCWGG	4 cut(s)	30, 154, 592, 604
EcoT14I	CCWWGG	2 cut(s)	476, 582
ErhI	CCWWGG	2 cut(s)	476, 582
FaeI	CATG	3 cut(s)	58, 194, 447
FaiI	YATR	5 cut(s)	56, 192, 379, 437, 445
FatI	CATG	3 cut(s)	54, 190, 443
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	3 cut(s)	275, 669, 672
FokI	GGATG	5 cut(s)	459, 493, 497, 584, 609
Fsp4HI	GCNGC	3 cut(s)	275, 669, 672
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	3 cut(s)	275, 669, 672
HaeIII	GGCC	2 cut(s)	159, 604
HgaI	GACGC	1 cut(s)	606
Hin1I	GRCGYC	1 cut(s)	617
Hin1II	CATG	3 cut(s)	58, 194, 447
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	5 cut(s)	248, 394, 439, 547, 661
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	65, 196, 337
Hpy188I	TCNGA	2 cut(s)	384, 399
Hpy188III	TCNNGA	1 cut(s)	569
Hpy8I	GTNNAC	3 cut(s)	65, 196, 337
HpyAV	CCTTC	4 cut(s)	103, 342, 350, 651
HpyCH4V	TGCA	5 cut(s)	50, 129, 147, 296, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 311
HpyF3I	CTNAG	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	617
Hsp92II	CATG	3 cut(s)	58, 194, 447
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	454, 578
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	315
MalI	GATC	2 cut(s)	456, 580
MboI	GATC	2 cut(s)	454, 578
MboII	GAAGA	3 cut(s)	204, 542, 624
MflI	RGATCY	1 cut(s)	578
MluCI	AATT	3 cut(s)	204, 363, 628
MlyI	GAGTC	2 cut(s)	257, 556
MnlI	CCTC	7 cut(s)	7, 28, 295, 338, 480, 569, 642
MseI	TTAA	3 cut(s)	111, 528, 564
MspCI	CTTAAG	1 cut(s)	110
MspR9I	CCNGG	4 cut(s)	32, 156, 594, 606
MvaI	CCWGG	4 cut(s)	32, 156, 594, 606
MwoI	GCNNNNNNNGC	2 cut(s)	302, 311
NdeII	GATC	2 cut(s)	454, 578
NlaIII	CATG	3 cut(s)	58, 194, 447
NlaIV	GGNNCC	2 cut(s)	160, 580
NspV	TTCGAA	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	394, 439, 661
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	3 cut(s)	276, 670, 673
PleI	GAGTC	2 cut(s)	256, 555
PpsI	GAGTC	2 cut(s)	256, 555
Psp6I	CCWGG	4 cut(s)	30, 154, 592, 604
PspGI	CCWGG	4 cut(s)	30, 154, 592, 604
PspN4I	GGNNCC	2 cut(s)	160, 580
PspPI	GGNCC	2 cut(s)	158, 602
PsuI	RGATCY	1 cut(s)	578
SaqAI	TTAA	3 cut(s)	111, 528, 564
SatI	GCNGC	3 cut(s)	275, 669, 672
Sau3AI	GATC	2 cut(s)	454, 578
Sau96I	GGNCC	2 cut(s)	158, 602
SchI	GAGTC	2 cut(s)	257, 556
ScrFI	CCNGG	4 cut(s)	32, 156, 594, 606
SetI	ASST	6 cut(s)	18, 39, 95, 108, 462, 591
SfuI	TTCGAA	1 cut(s)	26
SmlI	CTYRAG	2 cut(s)	110, 320
SmoI	CTYRAG	2 cut(s)	110, 320
Sse9I	AATT	3 cut(s)	204, 363, 628
SsiI	CCGC	2 cut(s)	60, 669
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	4 cut(s)	30, 154, 592, 604
StyI	CCWWGG	2 cut(s)	476, 582
TaqI	TCGA	3 cut(s)	26, 343, 664
TasI	AATT	3 cut(s)	204, 363, 628
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	3 cut(s)	394, 439, 661
Tru1I	TTAA	3 cut(s)	111, 528, 564
Tru9I	TTAA	3 cut(s)	111, 528, 564
TscAI	CASTG	2 cut(s)	396, 560
TseI	GCWGC	2 cut(s)	274, 671
TspDTI	ATGAA	3 cut(s)	179, 452, 527
TspRI	CASTG	2 cut(s)	396, 560
Vha464I	CTTAAG	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	628
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.