Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003185

Physical Location & Seq

Genomic Coordinates Reverse (-)

68721647 .. 68723210

Gene Structure 1564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0504600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAAGTTCCTATCTTCTTCTGAATCCTCTCCTTTTTCTTCTTTTTCTTCGTGTTCATCATCCACCATCACCACCACCACTACCACCACTTTTGATCTAACCAATTCAAAAGGTGCTACTAATGGATGCATTGCTGGCATTTTGCGCAGAATTCTCTGCTATGGTAGCTTGCCTACATACCCTTCTGATCATATCCCAGAAGAAACCAATTCTGTCGATCAATCTCAAAATGATCGAGCATTCAAGTCGAAAAACAAAACAGAGGAAACAGAGGCATCTGCCACTCCAAGCTTAGTGGCAAGGCTAATGGGGTTGGAGTCAATTCCAGATGCCAACTTGGTCTCCACCCTAAATTCAATATCCTGTAGCCGGTCTATGAATTCTGTAGACCGGCTTTCGGGAGACCATGATCCAATTGAGGCACATGAGCGCCGACGAGTCAAGTCGTTTAGAGAGATGCCAACATTTATTGAAAATGAGGAATTCCTTGTTCTTAGCTTTGAGAATGGGAGTGAAAGCAAAGAAAGGAGATCGAAGGGGAGGAAATGTGAGACGGGCCACGGAGAATTGAGGAAGAAGAAAGCAGGAAAGAGCAGAAACAAGGGAAATAGAAAACAAAGAGGGTTTGAGAAGGAAAAGAAGCAAGTTCAAGAAGAAAAAAGCAGAAGGGTTTTGAAAGATTTGAATGGGAGGGAAATGGTAAGAAGCAAAACCTCTCATAAACCCAAGAAAGAGACCATCTTTGATATGCTTAAGAATGTAGAATCTGATTGTACCTCGGAAGATTTAAGCCCGGTTTCTGTCCTTGATTGTGGTCAGTTTCTAGTTGATAACGAAGTTCCTACATCAGAAGAAGATCCAGTCTTGGCGAGTTCATTTCCGAGAAGAAAAGACGACTGTTTAACTTGTGATGCAAGAAAAACAAAGAAAATCGAAGGCATATGTCTTGGAACAAAGAAAGAGTATCATACTGCAGAGTACTTTGAGATTTTGGGTGAAATTTGTACTCTGACTGAAGCTGAATTGGTTGGATCAAATTGGAGCGTACACAAAGGCATCTGGAATAATCATGAAGGTTCTGCAGGAATTGCTGCAGATTTCGAGTCACAAATTCTAGGCCAATTAATAGAGGAGCTCGTGGATCAACTCGCTGATTTTCCTACTGAATATTCAAAACCTGTAAGATTTACGACCATTGTAAATTTGGTATTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

405

Amino Acids

45.24

Weight (kDa)

6.16

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	94 - 112	5e-08	DUF761-associated sequence motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16770 AT2G16770 AT4G35040 AT4G35040 AT4G35040 AT4G35040
fragaria_vesca	FvH4_2g01190 FvH4_2g01190 FvH4_2g01190
malus_domestica	MD05G1121500.v1.1 MD10G1124200.v1.1
prunus_persica	Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1
pyrus_communis	pycom05g11560
rosa_chinensis	RchiOBHm_Chr6g0251821
rosa_laevigata	RLG00000015427
rosa_multiflora	Rmu_co8227239.1_g000001 Rmu_sc0003965.1_g000002 Rmu_ssc0000213.1_g000117
rosa_roxburghii	Rroxscaffold_7G00216360
rosa_rugosa	Rorug05G0504100 Rorug05G0504200 Rorug05G0504300 Rorug05G0504400 Rorug05G0504500 Rorug05G0504600
rosa_samantha	Rh6AG015100 Rh6BG013400 Rh6CG010400 Rh6DG011600
rosa_wichuraiana	Rw6G001480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	387
AclWI	GGATC	4 cut(s)	404, 851, 1039, 1149
AcsI	RAATTY	7 cut(s)	150, 352, 379, 482, 999, 1110, 1201
AcuI	CTGAAG	1 cut(s)	1035
AfaI	GTAC	4 cut(s)	775, 980, 1006, 1047
AfiI	CCNNNNNNNGG	2 cut(s)	369, 397
AflII	CTTAAG	1 cut(s)	752
AgsI	TTSAA	8 cut(s)	108, 244, 357, 473, 650, 676, 685, 1173
AluBI	AGCT	5 cut(s)	168, 291, 498, 1019, 1135
AluI	AGCT	5 cut(s)	168, 291, 498, 1019, 1135
Alw21I	GWGCWC	1 cut(s)	1137
Alw26I	GTCTC	4 cut(s)	346, 396, 545, 728
AlwI	GGATC	4 cut(s)	404, 851, 1039, 1149
AoxI	GGCC	2 cut(s)	556, 1117
ApeKI	GCWGC	1 cut(s)	1091
ApoI	RAATTY	7 cut(s)	150, 352, 379, 482, 999, 1110, 1201
AseI	ATTAAT	1 cut(s)	1124
AspLEI	GCGC	2 cut(s)	147, 432
AspS9I	GGNCC	1 cut(s)	556
AsuC2I	CCSGG	1 cut(s)	794
AsuHPI	GGTGA	2 cut(s)	61, 1007
BanII	GRGCYC	1 cut(s)	1137
BauI	CACGAG	1 cut(s)	1136
Bbv12I	GWGCWC	1 cut(s)	1137
BbvI	GCAGC	1 cut(s)	1078
BccI	CCATC	2 cut(s)	74, 746
BcgI	CGANNNNNNTGC	2 cut(s)	228, 262
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	794
BcoDI	GTCTC	4 cut(s)	346, 396, 545, 728
BfaI	CTAG	2 cut(s)	824, 1115
BfmI	CTRYAG	5 cut(s)	364, 384, 972, 1080, 1092
BfoI	RGCGCY	1 cut(s)	433
BfrI	CTTAAG	1 cut(s)	752
BisI	GCNGC	1 cut(s)	1092
BlsI	GCNGC	1 cut(s)	1093
BmcAI	AGTACT	1 cut(s)	980
Bme1390I	CCNGG	1 cut(s)	794
BmgT120I	GGNCC	1 cut(s)	556
BmrFI	CCNGG	1 cut(s)	794
BmsI	GCATC	6 cut(s)	116, 284, 319, 447, 901, 1065
BpuMI	CCSGG	1 cut(s)	794
BsaI	GGTCTC	3 cut(s)	346, 396, 728
BsaJI	CCNNGG	2 cut(s)	559, 777
BsaXI	ACNNNNNCTCC	4 cut(s)	326, 356, 532, 562
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 397
Bse118I	RCCGGY	2 cut(s)	369, 390
Bse1I	ACTGG	1 cut(s)	860
Bse3DI	GCAATG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	559, 777
BseGI	GGATG	2 cut(s)	59, 131
BseLI	CCNNNNNNNGG	2 cut(s)	369, 397
BseMI	GCAATG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	860
BseRI	GAGGAG	1 cut(s)	1145
BseXI	GCAGC	1 cut(s)	1078
BshFI	GGCC	2 cut(s)	558, 1119
BsiHKAI	GWGCWC	1 cut(s)	1137
BsiSI	CCGG	3 cut(s)	370, 391, 794
BslI	CCNNNNNNNGG	2 cut(s)	369, 397
BsmAI	GTCTC	4 cut(s)	346, 396, 545, 728
BsmBI	CGTCTC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	558, 1119
Bso31I	GGTCTC	3 cut(s)	346, 396, 728
Bsp1286I	GDGCHC	1 cut(s)	1137
Bsp143I	GATC	9 cut(s)	94, 187, 217, 232, 409, 530, 856, 1031, 1141
BspANI	GGCC	2 cut(s)	558, 1119
BspHI	TCATGA	1 cut(s)	1069
BspMAI	CTGCAG	3 cut(s)	976, 1084, 1096
BspPI	GGATC	4 cut(s)	404, 851, 1039, 1149
BspTI	CTTAAG	1 cut(s)	752
BspTNI	GGTCTC	3 cut(s)	346, 396, 728
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	2 cut(s)	369, 390
BsrI	ACTGG	1 cut(s)	860
BssAI	RCCGGY	2 cut(s)	369, 390
BssECI	CCNNGG	2 cut(s)	559, 777
BssMI	GATC	9 cut(s)	94, 187, 217, 232, 409, 530, 856, 1031, 1141
BssSI	CACGAG	1 cut(s)	1136
Bst2BI	CACGAG	1 cut(s)	1136
Bst4CI	ACNGT	1 cut(s)	899
BstAFI	CTTAAG	1 cut(s)	752
BstAPI	GCANNNNNTGC	1 cut(s)	1088
BstC8I	GCNNGC	2 cut(s)	136, 170
BstDEI	CTNAG	2 cut(s)	292, 494
BstDSI	CCRYGG	1 cut(s)	559
BstF5I	GGATG	2 cut(s)	59, 131
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	2 cut(s)	147, 432
BstKTI	GATC	9 cut(s)	97, 190, 220, 235, 412, 533, 859, 1034, 1144
BstMAI	GTCTC	4 cut(s)	346, 396, 545, 728
BstMBI	GATC	9 cut(s)	94, 187, 217, 232, 409, 530, 856, 1031, 1141
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 144, 165, 1088
BstSCI	CCNGG	1 cut(s)	792
BstSFI	CTRYAG	5 cut(s)	364, 384, 972, 1080, 1092
BstV1I	GCAGC	1 cut(s)	1078
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BsuRI	GGCC	2 cut(s)	558, 1119
BtgI	CCRYGG	1 cut(s)	559
BtsCI	GGATG	2 cut(s)	59, 131
Cac8I	GCNNGC	2 cut(s)	136, 170
CciI	TCATGA	1 cut(s)	1069
CfoI	GCGC	2 cut(s)	147, 432
Cfr10I	RCCGGY	2 cut(s)	369, 390
Cfr13I	GGNCC	1 cut(s)	556
Csp6I	GTAC	4 cut(s)	774, 979, 1005, 1046
CspCI	CAANNNNNGTGG	4 cut(s)	73, 108, 276, 311
CviAII	CATG	3 cut(s)	407, 425, 1070
CviQI	GTAC	4 cut(s)	774, 979, 1005, 1046
DdeI	CTNAG	2 cut(s)	292, 494
DpnI	GATC	9 cut(s)	96, 189, 219, 234, 411, 532, 858, 1033, 1143
DpnII	GATC	9 cut(s)	94, 187, 217, 232, 409, 530, 856, 1031, 1141
Ecl136II	GAGCTC	1 cut(s)	1135
Eco24I	GRGCYC	1 cut(s)	1137
Eco31I	GGTCTC	3 cut(s)	346, 396, 728
Eco53kI	GAGCTC	1 cut(s)	1135
Eco57I	CTGAAG	1 cut(s)	1035
EcoICRI	GAGCTC	1 cut(s)	1135
EcoRI	GAATTC	3 cut(s)	150, 379, 482
EcoT22I	ATGCAT	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	1137
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	3 cut(s)	410, 428, 1073
FatI	CATG	3 cut(s)	406, 424, 1069
FauNDI	CATATG	1 cut(s)	941
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	1092
FokI	GGATG	2 cut(s)	46, 138
FriOI	GRGCYC	1 cut(s)	1137
Fsp4HI	GCNGC	1 cut(s)	1092
FspBI	CTAG	2 cut(s)	824, 1115
FspI	TGCGCA	1 cut(s)	146
GlaI	GCGC	2 cut(s)	146, 431
GluI	GCNGC	1 cut(s)	1092
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	2 cut(s)	558, 1119
HapII	CCGG	3 cut(s)	370, 391, 794
HhaI	GCGC	2 cut(s)	147, 432
Hin1II	CATG	3 cut(s)	410, 428, 1073
Hin6I	GCGC	2 cut(s)	145, 430
HinP1I	GCGC	2 cut(s)	145, 430
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	5 cut(s)	23, 317, 438, 764, 1103
HpaII	CCGG	3 cut(s)	370, 391, 794
HphI	GGTGA	2 cut(s)	61, 1007
Hpy166II	GTNNAC	2 cut(s)	388, 1048
Hpy188I	TCNGA	7 cut(s)	22, 187, 769, 781, 850, 882, 1011
Hpy188III	TCNNGA	5 cut(s)	326, 399, 650, 1060, 1070
Hpy8I	GTNNAC	2 cut(s)	388, 1048
Hpy99I	CGWCG	1 cut(s)	438
HpyAV	CCTTC	6 cut(s)	192, 529, 625, 660, 929, 1067
HpyCH4III	ACNGT	1 cut(s)	899
HpyCH4V	TGCA	5 cut(s)	129, 914, 974, 1082, 1094
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 144, 165, 1088
HpyF3I	CTNAG	2 cut(s)	292, 494
Hsp92II	CATG	3 cut(s)	410, 428, 1073
HspAI	GCGC	2 cut(s)	145, 430
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	9 cut(s)	94, 187, 217, 232, 409, 530, 856, 1031, 1141
LmnI	GCTCC	2 cut(s)	1041, 1132
Lsp1109I	GCAGC	1 cut(s)	1078
LweI	GCATC	6 cut(s)	116, 284, 319, 447, 901, 1065
MaeI	CTAG	2 cut(s)	824, 1115
MaeIII	GTNAC	1 cut(s)	1104
MalI	GATC	9 cut(s)	96, 189, 219, 234, 411, 532, 858, 1033, 1143
MboI	GATC	9 cut(s)	94, 187, 217, 232, 409, 530, 856, 1031, 1141
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	1 cut(s)	1137
MlyI	GAGTC	3 cut(s)	326, 447, 1112
MmeI	TCCRAC	2 cut(s)	294, 1009
Mph1103I	ATGCAT	1 cut(s)	131
MseI	TTAA	4 cut(s)	753, 788, 902, 1124
MspCI	CTTAAG	1 cut(s)	752
MspI	CCGG	3 cut(s)	370, 391, 794
MspR9I	CCNGG	1 cut(s)	794
MunI	CAATTG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	239
MwoI	GCNNNNNNNGC	4 cut(s)	135, 144, 165, 1088
NciI	CCSGG	1 cut(s)	794
NdeI	CATATG	1 cut(s)	941
NdeII	GATC	9 cut(s)	94, 187, 217, 232, 409, 530, 856, 1031, 1141
NlaIII	CATG	3 cut(s)	410, 428, 1073
NmuCI	GTSAC	1 cut(s)	1104
NsbI	TGCGCA	1 cut(s)	146
NsiI	ATGCAT	1 cut(s)	131
PagI	TCATGA	1 cut(s)	1069
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	23, 764
PkrI	GCNGC	1 cut(s)	1093
PleI	GAGTC	3 cut(s)	325, 446, 1111
PpsI	GAGTC	3 cut(s)	325, 446, 1111
PshBI	ATTAAT	1 cut(s)	1124
Psp124BI	GAGCTC	1 cut(s)	1137
PspPI	GGNCC	1 cut(s)	556
PstI	CTGCAG	3 cut(s)	976, 1084, 1096
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	4 cut(s)	775, 980, 1006, 1047
RsaNI	GTAC	4 cut(s)	774, 979, 1005, 1046
SacI	GAGCTC	1 cut(s)	1137
SaqAI	TTAA	4 cut(s)	753, 788, 902, 1124
SatI	GCNGC	1 cut(s)	1092
Sau3AI	GATC	9 cut(s)	94, 187, 217, 232, 409, 530, 856, 1031, 1141
Sau96I	GGNCC	1 cut(s)	556
ScaI	AGTACT	1 cut(s)	980
SchI	GAGTC	3 cut(s)	326, 447, 1112
ScrFI	CCNGG	1 cut(s)	794
SduI	GDGCHC	1 cut(s)	1137
SfaNI	GCATC	6 cut(s)	116, 284, 319, 447, 901, 1065
SfcI	CTRYAG	5 cut(s)	364, 384, 972, 1080, 1092
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SspI	AATATT	1 cut(s)	1169
SspMI	CTAG	2 cut(s)	824, 1115
SstI	GAGCTC	1 cut(s)	1137
StyD4I	CCNGG	1 cut(s)	792
TaaI	ACNGT	1 cut(s)	899
TaqI	TCGA	6 cut(s)	216, 235, 248, 533, 933, 1101
TatI	WGTACW	2 cut(s)	978, 1004
TfiI	GAWTC	2 cut(s)	23, 764
Tru1I	TTAA	4 cut(s)	753, 788, 902, 1124
Tru9I	TTAA	4 cut(s)	753, 788, 902, 1124
TseFI	GTSAC	1 cut(s)	1104
TseI	GCWGC	1 cut(s)	1091
Tsp45I	GTSAC	1 cut(s)	1104
TspDTI	ATGAA	5 cut(s)	17, 45, 392, 864, 1086
TspGWI	ACGGA	1 cut(s)	576
Vha464I	CTTAAG	1 cut(s)	752
VspI	ATTAAT	1 cut(s)	1124
XapI	RAATTY	7 cut(s)	150, 352, 379, 482, 999, 1110, 1201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1201
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	2 cut(s)	824, 1115
ZrmI	AGTACT	1 cut(s)	980
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.