Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003185

Physical Location & Seq

Genomic Coordinates Reverse (-)

68684502 .. 68687794

Gene Structure 3293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0504300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAAGTTTTTCGATTTGCCCTGCGATCTCTCAATGATGGTGTATCACGCCGGTTTTATCAGCCGCACAGTGTGAGAACTCTTTCCACATATGTACCCCCAGGTGGTAGAATGGATGATAAGCAGAACTCTAATTCCTTTGAATCTGCTGAAGTTTTTGAGGCGAGGATTTTCAGTGAAACTTCTGAAGGAAATCCCAAAACAGAGGCCTTTTTTGCTAAACTTAATAGTCTCCGAAAGACGACTCGTGATGGACATGCTTCAAATCCGCCTGGAGGAAATGGAAGTGGTTCCCATGTACTTGACGGCTTAGATGAAAGTTTTAACACATTGTCAGATGGAATGGATGGAAAATTAAAGAGAGCAGCCACGGACATTCAATATGATTTCGAGGAAGTCGATACAGATGGTTATACCTTCAGACCAGATATGAGATATCAACTGGGAGGGACTTATGATGTTAAAGATCTTGATCTTACTAGGCCTGGAGTTCATAAACCTCCCAGAAAGATTGATTTTGAAGTAACTACAAAGGAAGTTCTTCGAAAAGCTGATTTCAGGAATGTGAGATTCCTTGCAAATTTCATAACTGAGGCTGGAGTTATTATCAAAAGAAGCAAGACTAAGATTAGCGCCAAGGCCCAGAGAAAGGTTGCGAGAGAAATTAAGACAGCTCGAGCTTTCGGTTTAATGCCTTTCACAACGATGGGGACAAAATCATTTGTTTTTGGAAAGACTATGGAAAATCTTGGTGAAGACTTCGAATACGAAAGTTATGATAACCCTACAGCTGATGACGGTCTGGGATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

270

Amino Acids

30.36

Weight (kDa)

8.57

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S18	PF01084	183 - 231	1.5e-15	Ribosomal protein S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16770 AT2G16770 AT4G35040 AT4G35040 AT4G35040 AT4G35040
fragaria_vesca	FvH4_2g01190 FvH4_2g01190 FvH4_2g01190
malus_domestica	MD05G1121500.v1.1 MD10G1124200.v1.1
prunus_persica	Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1
pyrus_communis	pycom05g11560
rosa_chinensis	RchiOBHm_Chr6g0251821
rosa_laevigata	RLG00000015427
rosa_multiflora	Rmu_co8227239.1_g000001 Rmu_sc0003965.1_g000002 Rmu_ssc0000213.1_g000117
rosa_roxburghii	Rroxscaffold_7G00216360
rosa_rugosa	Rorug05G0504100 Rorug05G0504200 Rorug05G0504300 Rorug05G0504400 Rorug05G0504500 Rorug05G0504600
rosa_samantha	Rh6AG015100 Rh6BG013400 Rh6CG010400 Rh6DG011600
rosa_wichuraiana	Rw6G001480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 269
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	3 cut(s)	171, 207, 403
AdeI	CACNNNGTG	1 cut(s)	73
AfaI	GTAC	2 cut(s)	96, 300
AfiI	CCNNNNNNNGG	3 cut(s)	104, 275, 649
AgsI	TTSAA	4 cut(s)	143, 264, 380, 521
AjnI	CCWGG	3 cut(s)	100, 271, 484
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	4 cut(s)	551, 674, 680, 791
AluI	AGCT	4 cut(s)	551, 674, 680, 791
Alw26I	GTCTC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	675
AoxI	GGCC	3 cut(s)	207, 482, 639
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	580
Asp700I	GAANNNNTTC	3 cut(s)	82, 289, 540
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	1 cut(s)	640
AsuHPI	GGTGA	1 cut(s)	764
AsuII	TTCGAA	2 cut(s)	544, 762
AvaI	CYCGRG	1 cut(s)	675
BaeI	ACNNNNGTAYC	2 cut(s)	78, 111
BauI	CACGAG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	6 cut(s)	32, 245, 332, 341, 401, 700
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	3 cut(s)	102, 273, 486
BciVI	GTATCC	1 cut(s)	800
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	1 cut(s)	786
BfoI	RGCGCY	1 cut(s)	636
BfuI	GTATCC	1 cut(s)	800
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	2 cut(s)	65, 366
BlsI	GCNGC	2 cut(s)	66, 367
Bme1390I	CCNGG	3 cut(s)	102, 273, 486
BmeT110I	CYCGRG	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	3 cut(s)	102, 273, 486
BmrI	ACTGGG	1 cut(s)	452
BmuI	ACTGGG	1 cut(s)	452
BpiI	GAAGAC	1 cut(s)	762
BpmI	CTGGAG	3 cut(s)	294, 507, 618
Bpu14I	TTCGAA	2 cut(s)	544, 762
BsaBI	GATNNNNATC	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	100, 369, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 275, 649
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	3 cut(s)	102, 273, 486
BseDI	CCNNGG	3 cut(s)	100, 369, 636
BseGI	GGATG	2 cut(s)	121, 352
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	3 cut(s)	104, 275, 649
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	377
BshFI	GGCC	3 cut(s)	209, 484, 641
BsiHKCI	CYCGRG	1 cut(s)	675
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	2 cut(s)	463, 724
BslI	CCNNNNNNNGG	3 cut(s)	104, 275, 649
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	463, 724
BsnI	GGCC	3 cut(s)	209, 484, 641
BsoBI	CYCGRG	1 cut(s)	675
Bsp119I	TTCGAA	2 cut(s)	544, 762
Bsp143I	GATC	3 cut(s)	26, 466, 472
BspACI	CCGC	2 cut(s)	65, 269
BspANI	GGCC	3 cut(s)	209, 484, 641
BspCNI	CTCAG	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	292
BspT104I	TTCGAA	2 cut(s)	544, 762
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	100, 369, 636
BssMI	GATC	3 cut(s)	26, 466, 472
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	636
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	102, 273, 486
Bst4CI	ACNGT	2 cut(s)	71, 800
BstBI	TTCGAA	2 cut(s)	544, 762
BstDEI	CTNAG	3 cut(s)	310, 591, 624
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	121, 352
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	3 cut(s)	29, 469, 475
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	3 cut(s)	26, 466, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	3 cut(s)	102, 273, 486
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	100, 271, 484
BstSFI	CTRYAG	1 cut(s)	786
BstV1I	GCAGC	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	3 cut(s)	209, 484, 641
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	121, 352
BtsIMutI	CAGTG	2 cut(s)	76, 181
CfoI	GCGC	1 cut(s)	635
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	95, 299
CviAII	CATG	2 cut(s)	257, 296
CviQI	GTAC	2 cut(s)	95, 299
DdeI	CTNAG	3 cut(s)	310, 591, 624
DpnI	GATC	3 cut(s)	28, 468, 474
DpnII	GATC	3 cut(s)	26, 466, 472
DraIII	CACNNNGTG	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	636
Eco147I	AGGCCT	2 cut(s)	209, 484
Eco32I	GATATC	1 cut(s)	437
Eco57I	CTGAAG	3 cut(s)	171, 207, 403
Eco88I	CYCGRG	1 cut(s)	675
EcoRII	CCWGG	3 cut(s)	100, 271, 484
EcoRV	GATATC	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	2 cut(s)	260, 299
FaqI	GGGAC	2 cut(s)	463, 724
FatI	CATG	2 cut(s)	256, 295
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	65, 366
FokI	GGATG	2 cut(s)	128, 359
Fsp4HI	GCNGC	2 cut(s)	65, 366
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	2 cut(s)	65, 366
GsuI	CTGGAG	3 cut(s)	294, 507, 618
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	209, 484, 641
HapII	CCGG	1 cut(s)	52
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	2 cut(s)	260, 299
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HinfI	GANTC	3 cut(s)	143, 244, 570
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	764
Hpy188I	TCNGA	4 cut(s)	187, 236, 337, 422
Hpy188III	TCNNGA	3 cut(s)	248, 470, 559
HpyAV	CCTTC	2 cut(s)	182, 427
HpyCH4III	ACNGT	2 cut(s)	71, 800
HpyCH4V	TGCA	1 cut(s)	578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	3 cut(s)	310, 591, 624
Hsp92II	CATG	2 cut(s)	260, 299
HspAI	GCGC	1 cut(s)	633
Kzo9I	GATC	3 cut(s)	26, 466, 472
Lsp1109I	GCAGC	1 cut(s)	377
MaeI	CTAG	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	3 cut(s)	28, 468, 474
MboI	GATC	3 cut(s)	26, 466, 472
MboII	GAAGA	2 cut(s)	533, 767
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	4 cut(s)	133, 353, 580, 663
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	8 cut(s)	154, 159, 199, 269, 385, 440, 510, 586
MroXI	GAANNNNTTC	3 cut(s)	82, 289, 540
MseI	TTAA	6 cut(s)	225, 324, 356, 462, 666, 689
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	3 cut(s)	102, 273, 486
MvaI	CCWGG	3 cut(s)	102, 273, 486
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	26, 466, 472
NlaIII	CATG	2 cut(s)	260, 299
NlaIV	GGNNCC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	260
NspV	TTCGAA	2 cut(s)	544, 762
PaeR7I	CTCGAG	1 cut(s)	675
PceI	AGGCCT	2 cut(s)	209, 484
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PdmI	GAANNNNTTC	3 cut(s)	82, 289, 540
PfeI	GAWTC	2 cut(s)	143, 570
PkrI	GCNGC	2 cut(s)	66, 367
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	100, 271, 484
PspGI	CCWGG	3 cut(s)	100, 271, 484
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	640
PspXI	VCTCGAGB	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	2 cut(s)	96, 300
RsaNI	GTAC	2 cut(s)	95, 299
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	6 cut(s)	225, 324, 356, 462, 666, 689
SatI	GCNGC	2 cut(s)	65, 366
Sau3AI	GATC	3 cut(s)	26, 466, 472
Sau96I	GGNCC	1 cut(s)	640
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	3 cut(s)	102, 273, 486
SetI	ASST	8 cut(s)	106, 419, 502, 553, 654, 676, 682, 793
SfcI	CTRYAG	1 cut(s)	786
Sfr274I	CTCGAG	1 cut(s)	675
SfuI	TTCGAA	2 cut(s)	544, 762
SlaI	CTCGAG	1 cut(s)	675
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	4 cut(s)	133, 353, 580, 663
SseBI	AGGCCT	2 cut(s)	209, 484
SsiI	CCGC	2 cut(s)	65, 269
SspMI	CTAG	1 cut(s)	480
StuI	AGGCCT	2 cut(s)	209, 484
StyD4I	CCNGG	3 cut(s)	100, 271, 484
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	2 cut(s)	71, 800
TaqI	TCGA	6 cut(s)	13, 390, 399, 544, 676, 762
TasI	AATT	4 cut(s)	133, 353, 580, 663
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	143, 570
Tru1I	TTAA	6 cut(s)	225, 324, 356, 462, 666, 689
Tru9I	TTAA	6 cut(s)	225, 324, 356, 462, 666, 689
TscAI	CASTG	2 cut(s)	76, 181
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	4 cut(s)	17, 330, 482, 574
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	2 cut(s)	76, 181
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	675
XmnI	GAANNNNTTC	3 cut(s)	82, 289, 540
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.