Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003185

Physical Location & Seq

Genomic Coordinates Reverse (-)

2315324 .. 2316715

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G001480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAAGAGGTTGCAGGGTCAGGCTGCATTGGAGGCCGAGATTGCGAGGCTCAAGTGTTTGCTTGTGGACATTAGGGGAAGGATTGAAGGAGAAATTGGATCTTTTCCGTATCAGAAGCCGGTGAATCCGGGTCTGCAGAGTCACAACATGACCGTGTTTCACAATCAGGATGGAGGATCAATGGGGCTTTCTGGATGTGATCTTGGAAATGTGATGTTAGAATCCAATGTCAATCTTTCTGGCACAAAGAAGAGGAAAGGAGGGGCTCGAGCTGCAGCAGCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

95

Amino Acids

10.09

Weight (kDa)

9.44

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16770 AT2G16770 AT4G35040 AT4G35040 AT4G35040 AT4G35040
fragaria_vesca	FvH4_2g01190 FvH4_2g01190 FvH4_2g01190
malus_domestica	MD05G1121500.v1.1 MD10G1124200.v1.1
prunus_persica	Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1
pyrus_communis	pycom05g11560
rosa_chinensis	RchiOBHm_Chr6g0251821
rosa_laevigata	RLG00000015427
rosa_multiflora	Rmu_co8227239.1_g000001 Rmu_sc0003965.1_g000002 Rmu_ssc0000213.1_g000117
rosa_roxburghii	Rroxscaffold_7G00216360
rosa_rugosa	Rorug05G0504100 Rorug05G0504200 Rorug05G0504300 Rorug05G0504400 Rorug05G0504500 Rorug05G0504600
rosa_samantha	Rh6AG015100 Rh6BG013400 Rh6CG010400 Rh6DG011600
rosa_wichuraiana	Rw6G001480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	106, 184
AgsI	TTSAA	1 cut(s)	86
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
AlwI	GGATC	2 cut(s)	106, 184
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	4 cut(s)	23, 272, 275, 278
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	10, 259
BccI	CCATC	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	129
BfmI	CTRYAG	2 cut(s)	134, 273
BisI	GCNGC	4 cut(s)	24, 273, 276, 279
BlsI	GCNGC	4 cut(s)	25, 274, 277, 280
Bme1390I	CCNGG	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	118
BseGI	GGATG	2 cut(s)	175, 200
BseXI	GCAGC	2 cut(s)	10, 259
BshFI	GGCC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	119, 128
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	3 cut(s)	98, 176, 199
BspANI	GGCC	1 cut(s)	35
BspMAI	CTGCAG	2 cut(s)	138, 277
BspPI	GGATC	2 cut(s)	106, 184
BsrFI	RCCGGY	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	118
BssMI	GATC	3 cut(s)	98, 176, 199
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	175, 200
BstKTI	GATC	3 cut(s)	101, 179, 202
BstMBI	GATC	3 cut(s)	98, 176, 199
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 41, 272, 278
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	2 cut(s)	134, 273
BstV1I	GCAGC	2 cut(s)	10, 259
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	175, 200
Cfr10I	RCCGGY	1 cut(s)	118
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	7 cut(s)	23, 35, 49, 118, 187, 266, 272
CviKI_1	RGCY	7 cut(s)	23, 35, 49, 118, 187, 266, 272
DpnI	GATC	3 cut(s)	100, 178, 201
DpnII	GATC	3 cut(s)	98, 176, 199
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	268
FaeI	CATG	1 cut(s)	151
FaiI	YATR	1 cut(s)	149
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	24, 273, 276, 279
FokI	GGATG	2 cut(s)	182, 207
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	4 cut(s)	24, 273, 276, 279
GluI	GCNGC	4 cut(s)	24, 273, 276, 279
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	2 cut(s)	119, 128
Hin1II	CATG	1 cut(s)	151
HinfI	GANTC	3 cut(s)	124, 139, 221
HpaII	CCGG	2 cut(s)	119, 128
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	167, 192
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	72, 80
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	13, 26, 136, 275
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 41, 272, 278
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	98, 176, 199
LpnPI	CCDG	6 cut(s)	5, 132, 141, 152, 177, 225
Lsp1109I	GCAGC	2 cut(s)	10, 259
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	100, 178, 201
MboI	GATC	3 cut(s)	98, 176, 199
MboII	GAAGA	2 cut(s)	16, 262
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	2 cut(s)	93, 283
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	5 cut(s)	25, 39, 167, 246, 254
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	2 cut(s)	119, 128
MspR9I	CCNGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	4 cut(s)	32, 41, 272, 278
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	3 cut(s)	98, 176, 199
NlaIII	CATG	1 cut(s)	151
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	124, 221
PkrI	GCNGC	4 cut(s)	25, 274, 277, 280
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PspXI	VCTCGAGB	1 cut(s)	267
PstI	CTGCAG	2 cut(s)	138, 277
PsuI	RGATCY	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	152
SatI	GCNGC	4 cut(s)	24, 273, 276, 279
Sau3AI	GATC	3 cut(s)	98, 176, 199
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	2 cut(s)	11, 274
SfcI	CTRYAG	2 cut(s)	134, 273
Sfr274I	CTCGAG	1 cut(s)	267
SlaI	CTCGAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	50, 267
SmoI	CTYRAG	2 cut(s)	50, 267
Sse9I	AATT	2 cut(s)	93, 283
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	268
TasI	AATT	2 cut(s)	93, 283
TfiI	GAWTC	2 cut(s)	124, 221
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	4 cut(s)	23, 272, 275, 278
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	96
XhoI	CTCGAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.