Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003185

Physical Location & Seq

Genomic Coordinates Reverse (-)

1120549 .. 1124762

Gene Structure 4214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGACGATGGAGAGCTTGATTTTTCGAACCAGGAGCTTGACTTTTCGATTCCCAACATGACCGGTGAGCTTCCTAGTAGTTGCTCAATGGAGAACATATTCGGTGACTTCTTCAAGGAGACTGACACTGCTTGCACTCACAACCACATTTGCAACCCTCCCTCGGGGCCTGACTCGGCTCATAGGCACACTTGCATTCATGTCCACACTAAGATTTTGTCATCGGGTGCGAGTGAGGACAAGGCTGGAACTGATGATACTGCTGAGTCTGGGGAGAAGAACTCGAAGAAGCGGCCTTTGGGGAATCGGGAAGCTGTTCGAAAGTACAGGGAGAAGAAGAAGGCTCGAGCAGCTTCATTGGAGGATGAGGTTATTAGGTTGAGAGCTGTGAATCAGCAGCTGATGAAGAGGTTGCAAGGTCAGGCTGCATTGGAGGCCGAGATTGCGAGGCTCAAGTGTTTGCTTGTGGATATTAGGGGGAGGATTGAGGGAGAAATTGGATCTTTTCCGTATCAGAAGCCAGTGAATCCGGGTATGCAGAATCCGAACTATAGCAGTGCTTATGTGATGAATCCATGTAACATGCAGTGTGATGATCAGCTCTATTGCCTTCAACGAGGGAACGATGGAAAACGTGGAGATGGGGTGGCAATGAATGGCCAAGGGTTTAGTGGTTGTGAATTTGAGAATCTTCAGTGTTTCACAAATCAGGATGGAGGATCAATGGGGCTTTCTGGATGTGACCTTGGAAATGTGATGTTAGAATCCAATGGCAGTCATTCTGGCACAAAGAAGAGGAAAGGAGGGGCACGCGCTGCTGCAGCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

277

Amino Acids

30.03

Weight (kDa)

6.01

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	92 - 147	8.5e-12	Basic region leucine zipper
bZIP_1	PF00170	96 - 140	4.1e-06	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16770 AT2G16770 AT4G35040 AT4G35040 AT4G35040 AT4G35040
fragaria_vesca	FvH4_2g01190 FvH4_2g01190 FvH4_2g01190
malus_domestica	MD05G1121500.v1.1 MD10G1124200.v1.1
prunus_persica	Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1
pyrus_communis	pycom05g11560
rosa_chinensis	RchiOBHm_Chr6g0251821
rosa_laevigata	RLG00000015427
rosa_multiflora	Rmu_co8227239.1_g000001 Rmu_sc0003965.1_g000002 Rmu_ssc0000213.1_g000117
rosa_roxburghii	Rroxscaffold_7G00216360
rosa_rugosa	Rorug05G0504100 Rorug05G0504200 Rorug05G0504300 Rorug05G0504400 Rorug05G0504500 Rorug05G0504600
rosa_samantha	Rh6AG015100 Rh6BG013400 Rh6CG010400 Rh6DG011600
rosa_wichuraiana	Rw6G001480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	813
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	2 cut(s)	508, 727
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	163, 164
AgeI	ACCGGT	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	115, 614
AjnI	CCWGG	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	8 cut(s)	16, 37, 70, 314, 353, 386, 400, 601
AluI	AGCT	8 cut(s)	16, 37, 70, 314, 353, 386, 400, 601
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	508, 727
AlwNI	CAGNNNCTG	1 cut(s)	400
Ama87I	CYCGRG	2 cut(s)	163, 345
AoxI	GGCC	4 cut(s)	167, 293, 435, 658
ApeKI	GCWGC	6 cut(s)	350, 397, 425, 815, 818, 821
ApoI	RAATTY	1 cut(s)	680
AsiGI	ACCGGT	1 cut(s)	62
Asp700I	GAANNNNTTC	2 cut(s)	98, 315
AspLEI	GCGC	1 cut(s)	815
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	531
AsuHPI	GGTGA	2 cut(s)	77, 116
AsuII	TTCGAA	2 cut(s)	26, 319
AvaI	CYCGRG	2 cut(s)	163, 345
BaeGI	GKGCMC	1 cut(s)	811
BalI	TGGCCA	1 cut(s)	660
BbvI	GCAGC	5 cut(s)	362, 409, 412, 802, 805
BccI	CCATC	4 cut(s)	2, 620, 635, 707
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	2 cut(s)	550, 819
BisI	GCNGC	7 cut(s)	293, 351, 398, 426, 816, 819, 822
BlsI	GCNGC	7 cut(s)	294, 352, 399, 427, 817, 820, 823
Bme1390I	CCNGG	2 cut(s)	32, 531
BmeT110I	CYCGRG	2 cut(s)	163, 345
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	32, 531
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu14I	TTCGAA	2 cut(s)	26, 319
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	162, 661, 745
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 164
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	162, 661, 745
BseGI	GGATG	3 cut(s)	370, 718, 743
BseLI	CCNNNNNNNGG	2 cut(s)	163, 164
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	521
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	5 cut(s)	362, 409, 412, 802, 805
Bsh1236I	CGCG	1 cut(s)	813
BshFI	GGCC	4 cut(s)	169, 295, 437, 660
BshTI	ACCGGT	1 cut(s)	62
BsiHKCI	CYCGRG	2 cut(s)	163, 345
BsiSI	CCGG	2 cut(s)	63, 530
BslI	CCNNNNNNNGG	2 cut(s)	163, 164
BsmAI	GTCTC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	4 cut(s)	169, 295, 437, 660
BsoBI	CYCGRG	2 cut(s)	163, 345
Bsp119I	TTCGAA	2 cut(s)	26, 319
Bsp1286I	GDGCHC	1 cut(s)	811
Bsp143I	GATC	3 cut(s)	500, 595, 719
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	4 cut(s)	169, 295, 437, 660
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	813
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	1 cut(s)	823
BspPI	GGATC	2 cut(s)	508, 727
BspT104I	TTCGAA	2 cut(s)	26, 319
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	162, 661, 745
BssMI	GATC	3 cut(s)	500, 595, 719
BssT1I	CCWWGG	2 cut(s)	661, 745
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	2 cut(s)	401, 788
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstBI	TTCGAA	2 cut(s)	26, 319
BstC8I	GCNNGC	2 cut(s)	133, 811
BstDEI	CTNAG	2 cut(s)	210, 264
BstF5I	GGATG	3 cut(s)	370, 718, 743
BstFNI	CGCG	1 cut(s)	813
BstHHI	GCGC	1 cut(s)	815
BstKTI	GATC	3 cut(s)	503, 598, 722
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	3 cut(s)	500, 595, 719
BstMWI	GCNNNNNNNGC	5 cut(s)	350, 434, 443, 815, 821
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	30, 529
BstSFI	CTRYAG	2 cut(s)	550, 819
BstSLI	GKGCMC	1 cut(s)	811
BstUI	CGCG	1 cut(s)	813
BstV1I	GCAGC	5 cut(s)	362, 409, 412, 802, 805
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	4 cut(s)	169, 295, 437, 660
BtsCI	GGATG	3 cut(s)	370, 718, 743
BtsI	GCAGTG	3 cut(s)	126, 562, 593
BtsIMutI	CAGTG	5 cut(s)	126, 528, 562, 593, 701
Cac8I	GCNNGC	2 cut(s)	133, 811
CaiI	CAGNNNCTG	1 cut(s)	400
CfoI	GCGC	1 cut(s)	815
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	325
CspAI	ACCGGT	1 cut(s)	62
CviAII	CATG	4 cut(s)	58, 200, 576, 583
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	210, 264
DpnI	GATC	3 cut(s)	502, 597, 721
DpnII	GATC	3 cut(s)	500, 595, 719
EaeI	YGGCCR	1 cut(s)	658
Eam1104I	CTCTTC	2 cut(s)	401, 788
EarI	CTCTTC	2 cut(s)	401, 788
Eco130I	CCWWGG	2 cut(s)	661, 745
Eco57I	CTGAAG	1 cut(s)	677
Eco88I	CYCGRG	2 cut(s)	163, 345
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	661, 745
ErhI	CCWWGG	2 cut(s)	661, 745
FaeI	CATG	4 cut(s)	61, 203, 579, 586
FaiI	YATR	9 cut(s)	59, 98, 183, 201, 536, 552, 564, 577, 584
FatI	CATG	4 cut(s)	57, 199, 575, 582
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	7 cut(s)	293, 351, 398, 426, 816, 819, 822
FokI	GGATG	3 cut(s)	377, 725, 750
Fsp4HI	GCNGC	7 cut(s)	293, 351, 398, 426, 816, 819, 822
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	814
GluI	GCNGC	7 cut(s)	293, 351, 398, 426, 816, 819, 822
HaeIII	GGCC	4 cut(s)	169, 295, 437, 660
HapII	CCGG	2 cut(s)	63, 530
HhaI	GCGC	1 cut(s)	815
Hin1II	CATG	4 cut(s)	61, 203, 579, 586
Hin6I	GCGC	1 cut(s)	813
HinP1I	GCGC	1 cut(s)	813
HpaII	CCGG	2 cut(s)	63, 530
HphI	GGTGA	2 cut(s)	77, 116
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	516, 546
Hpy188III	TCNNGA	3 cut(s)	308, 710, 735
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	334, 620
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	8 cut(s)	135, 153, 195, 415, 428, 538, 586, 821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	350, 434, 443, 815, 821
HpyF3I	CTNAG	2 cut(s)	210, 264
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	4 cut(s)	61, 203, 579, 586
HspAI	GCGC	1 cut(s)	813
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	500, 595, 719
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	5 cut(s)	362, 409, 412, 802, 805
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	3 cut(s)	104, 578, 740
MalI	GATC	3 cut(s)	502, 597, 721
MboI	GATC	3 cut(s)	500, 595, 719
MboII	GAAGA	8 cut(s)	103, 289, 298, 346, 349, 418, 683, 805
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	1 cut(s)	811
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	3 cut(s)	495, 680, 826
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	2 cut(s)	167, 275
Mox20I	TGGCCA	1 cut(s)	660
MroXI	GAANNNNTTC	2 cut(s)	98, 315
MscI	TGGCCA	1 cut(s)	660
Msp20I	TGGCCA	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	2 cut(s)	63, 530
MspR9I	CCNGG	2 cut(s)	32, 531
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	813
MwoI	GCNNNNNNNGC	5 cut(s)	350, 434, 443, 815, 821
NciI	CCSGG	1 cut(s)	531
NdeII	GATC	3 cut(s)	500, 595, 719
NlaIII	CATG	4 cut(s)	61, 203, 579, 586
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	2 cut(s)	155, 463
NmuCI	GTSAC	2 cut(s)	104, 740
NspI	RCATGY	1 cut(s)	586
NspV	TTCGAA	2 cut(s)	26, 319
PaeR7I	CTCGAG	1 cut(s)	345
PctI	GAATGC	1 cut(s)	195
PdmI	GAANNNNTTC	2 cut(s)	98, 315
PfeI	GAWTC	8 cut(s)	49, 304, 391, 526, 541, 571, 688, 764
PinAI	ACCGGT	1 cut(s)	62
PkrI	GCNGC	7 cut(s)	294, 352, 399, 427, 817, 820, 823
PleI	GAGTC	2 cut(s)	167, 274
PpsI	GAGTC	2 cut(s)	167, 274
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	167
PspXI	VCTCGAGB	1 cut(s)	345
PsrI	GAACNNNNNNTAC	2 cut(s)	241, 273
PstI	CTGCAG	1 cut(s)	823
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SatI	GCNGC	7 cut(s)	293, 351, 398, 426, 816, 819, 822
Sau3AI	GATC	3 cut(s)	500, 595, 719
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	167, 275
ScrFI	CCNGG	2 cut(s)	32, 531
SduI	GDGCHC	1 cut(s)	811
SfcI	CTRYAG	2 cut(s)	550, 819
Sfr274I	CTCGAG	1 cut(s)	345
SfuI	TTCGAA	2 cut(s)	26, 319
SlaI	CTCGAG	1 cut(s)	345
SmlI	CTYRAG	2 cut(s)	345, 452
SmoI	CTYRAG	2 cut(s)	345, 452
Sse9I	AATT	3 cut(s)	495, 680, 826
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	30, 529
StyI	CCWWGG	2 cut(s)	661, 745
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	5 cut(s)	26, 47, 284, 319, 346
TasI	AATT	3 cut(s)	495, 680, 826
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	8 cut(s)	49, 304, 391, 526, 541, 571, 688, 764
TscAI	CASTG	5 cut(s)	133, 528, 562, 593, 701
TseFI	GTSAC	2 cut(s)	104, 740
TseI	GCWGC	6 cut(s)	350, 397, 425, 815, 818, 821
Tsp45I	GTSAC	2 cut(s)	104, 740
TspDTI	ATGAA	5 cut(s)	188, 345, 419, 584, 668
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	5 cut(s)	133, 528, 562, 593, 701
XapI	RAATTY	1 cut(s)	680
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XhoI	CTCGAG	1 cut(s)	345
XmnI	GAANNNNTTC	2 cut(s)	98, 315
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.