AT2G17695

Domain of unknown function (DUF1990)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009343
Physical Location & Seq
Reverse (-)
7682781 .. 7685202
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17695.2

Sequence Viewer

Length: 618 bp
ATGGTGTTCTTGAGTTGGGGCCGTCCATCTTCCGAGCAACAGCAACAAGTCATCAACAAAACAGGAACCTTCAATTATGACAACAAGTACAGAGGAGTTTCGTCTAGGTCTATTGCTAAACTTAAGGAAGATTCAGAGATTGATAAAGATGGATTCTTGATCAATCATGCTCGTGTTTTAGTCGGTTCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAAGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAACCGGTAAGAAGTTTTGCATTTGCGTGAAAGAAGTTCTTCCATGGGTGATGCTTCCTCTACAAGTGGTTTATGTTGACGAAAGCCGGAAATCAAGAAAAGGCCCTGCGCATTTCGGTTACGGAAGCGGTACTCTTCAGGGACATTTACTCGCTGGAGAAGAAAAGTTTTCGATAGAGCTTGATGGAAATGGTGAGGTATGGTATGAGATAACGTCTTTCTCAAAGCCTGCTCATTTCTTGTCGTTCCTCGGGTATCCTTATGTGAAGCTAAGGCAGAAGCACTTTGCTCGTCATTCTTCTGAAGCTGTGCTGAAACATGTCAATGCTTCGTGA

Protein Analysis

205

Amino Acids

23.25

Weight (kDa)

9.21

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1990 PF09348 50 - 196 2.1e-41 Domain of unknown function (DUF1990)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 393
AciI CCGC 1 cut(s) 411
AclWI GGATC 1 cut(s) 260
AcuI CTGAAG 2 cut(s) 404, 606
AfaI GTAC 2 cut(s) 89, 415
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 601
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 2 cut(s) 73, 284
AluBI AGCT 4 cut(s) 221, 463, 553, 590
AluI AGCT 4 cut(s) 221, 463, 553, 590
AlwI GGATC 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 2 cut(s) 19, 385
AsiGI ACCGGT 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 19, 386
AsuHPI GGTGA 2 cut(s) 343, 488
AvaI CYCGRG 1 cut(s) 533
BauI CACGAG 1 cut(s) 171
BccI CCATC 3 cut(s) 34, 143, 461
BceAI ACGGC 1 cut(s) 6
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciVI GTATCC 1 cut(s) 549
BclI TGATCA 1 cut(s) 159
BfaI CTAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 122
BfuI GTATCC 1 cut(s) 549
BmeT110I CYCGRG 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 19, 386
BmiI GGNNCC 2 cut(s) 20, 67
BmsI GCATC 1 cut(s) 324
BpmI CTGGAG 2 cut(s) 209, 459
Bpu10I CCTNAGC 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 326, 532
BsaWI WCCGGW 1 cut(s) 287
Bse118I RCCGGY 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 326, 532
BseRI GAGGAG 1 cut(s) 108
BshFI GGCC 2 cut(s) 21, 387
BshTI ACCGGT 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 2 cut(s) 288, 370
BslFI GGGAC 1 cut(s) 438
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 2 cut(s) 21, 387
BsoBI CYCGRG 1 cut(s) 533
Bsp143I GATC 2 cut(s) 159, 265
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 1 cut(s) 411
BspANI GGCC 2 cut(s) 21, 387
BspLI GGNNCC 2 cut(s) 20, 67
BspPI GGATC 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 326, 532
BssMI GATC 2 cut(s) 159, 265
BssSI CACGAG 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 423
BstAFI CTTAAG 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 554
BstDSI CCRYGG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 2 cut(s) 162, 268
BstMBI GATC 2 cut(s) 159, 265
BstNSI RCATGY 1 cut(s) 605
BsuI GTATCC 1 cut(s) 549
BsuRI GGCC 2 cut(s) 21, 387
BtgI CCRYGG 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 1 cut(s) 394
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 19, 386
Csp6I GTAC 2 cut(s) 88, 414
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 3 cut(s) 167, 327, 602
CviJI RGCY 8 cut(s) 21, 221, 369, 387, 463, 511, 553, 590
CviKI_1 RGCY 8 cut(s) 21, 221, 369, 387, 463, 511, 553, 590
CviQI GTAC 2 cut(s) 88, 414
DdeI CTNAG 1 cut(s) 554
DpnI GATC 2 cut(s) 161, 267
DpnII GATC 2 cut(s) 159, 265
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 326
Eco57I CTGAAG 2 cut(s) 404, 606
Eco88I CYCGRG 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 3 cut(s) 170, 330, 605
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 1 cut(s) 438
FatI CATG 3 cut(s) 166, 326, 601
FbaI TGATCA 1 cut(s) 159
FspBI CTAG 1 cut(s) 105
FspI TGCGCA 1 cut(s) 393
GlaI GCGC 1 cut(s) 393
GsuI CTGGAG 2 cut(s) 209, 459
HaeIII GGCC 2 cut(s) 21, 387
HapII CCGG 2 cut(s) 288, 370
HhaI GCGC 1 cut(s) 394
Hin1II CATG 3 cut(s) 170, 330, 605
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 2 cut(s) 131, 153
HpaII CCGG 2 cut(s) 288, 370
HphI GGTGA 2 cut(s) 343, 488
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 3 cut(s) 34, 136, 586
Hpy188III TCNNGA 5 cut(s) 10, 157, 226, 378, 615
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 2 cut(s) 79, 202
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 2 cut(s) 272, 303
HpyF3I CTNAG 1 cut(s) 554
HpySE526I ACGT 1 cut(s) 497
Hsp92II CATG 3 cut(s) 170, 330, 605
HspAI GCGC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 159, 265
LweI GCATC 1 cut(s) 324
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 161, 267
MboI GATC 2 cut(s) 159, 265
MboII GAAGA 6 cut(s) 21, 140, 314, 410, 455, 573
MluCI AATT 2 cut(s) 73, 229
MnlI CCTC 4 cut(s) 86, 351, 472, 542
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 3 cut(s) 171, 308, 606
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 2 cut(s) 288, 370
NcoI CCATGG 1 cut(s) 326
NdeII GATC 2 cut(s) 159, 265
NlaIII CATG 3 cut(s) 170, 330, 605
NlaIV GGNNCC 2 cut(s) 20, 67
NsbI TGCGCA 1 cut(s) 393
NspI RCATGY 1 cut(s) 605
PciI ACATGT 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 131, 153
PinAI ACCGGT 1 cut(s) 287
PscI ACATGT 1 cut(s) 601
PspN4I GGNNCC 2 cut(s) 20, 67
PspPI GGNCC 2 cut(s) 19, 386
RsaI GTAC 2 cut(s) 89, 415
RsaNI GTAC 2 cut(s) 88, 414
RseI CAYNNNNRTG 3 cut(s) 171, 308, 606
SaqAI TTAA 1 cut(s) 123
Sau3AI GATC 2 cut(s) 159, 265
Sau96I GGNCC 2 cut(s) 19, 386
SetI ASST 9 cut(s) 71, 110, 223, 280, 465, 483, 500, 555, 592
SfaNI GCATC 1 cut(s) 324
SmiMI CAYNNNNRTG 3 cut(s) 171, 308, 606
SmlI CTYRAG 2 cut(s) 10, 122
SmoI CTYRAG 2 cut(s) 10, 122
Sse9I AATT 2 cut(s) 73, 229
SsiI CCGC 1 cut(s) 411
SspMI CTAG 1 cut(s) 105
StyI CCWWGG 1 cut(s) 326
TaiI ACGT 1 cut(s) 500
TaqI TCGA 1 cut(s) 455
TasI AATT 2 cut(s) 73, 229
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 2 cut(s) 131, 153
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 420
Vha464I CTTAAG 1 cut(s) 122
XceI RCATGY 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.