Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009343

Physical Location & Seq

Genomic Coordinates Forward (+)

82148012 .. 82150856

Gene Structure 2845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTTTTCTTGAGCTGGGCTCCCCCAACTCCAAAAGAACAAAAGGCTTGCATTGACAGGTCAGGTGGCTTTAACTATGAAGCTAAGTTCAGGGGAGCTACTGCTAAGTCCTTATCTTCCCTGCAAGAAGATAATGGCCTCTCAGAAAATGGTTTCTTATGCAACCATGCCCGTGTTTTGGTCGGTTCGGGTTTGGAGACTTATGAGAAGGGCAAGAGGGCTCTTCAGGATTGGAGGCATTTTGGATTGAATTGGGCGTTTGTTGATCCGAAGACGCCAGTTCAAAATGGAGTGAAGTTTTGTGTTTGTGTCAAGGAGTTTCTGCCATGGGTCATGATGCCTCTTCAGATAGTGTATGTGAATGAGAATAGAACTAGTAAAGAGTCCATGGCGTCTTTTCGTTTTGGGGGTGGTACTCTTCAAGGTCACTTGCTGGCTGGGGAGGAACGTTTCTCAATTGAACTGGATGAGTACAACCAAGTGTGGTATGAGATACTTTCCTTCTCAAAACCAGCTCACCTATTGTCATTTGTTGGGTACCCATATGTAATGCTCAGGCAAAAGTATTTTGCTCATCATTCTACTAATGCAATCAAGAAACATTTGAAAGCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1990

Protein Analysis

205

Amino Acids

23.35

Weight (kDa)

8.99

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1990	PF09348	50 - 196	2.7e-37	Domain of unknown function (DUF1990)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17695 AT2G17695 AT2G17695
fragaria_vesca	FvH4_1g10900 FvH4_1g10900 FvH4_1g10900 FvH4_1g10900
malus_domestica	MD02G1242600.v1.1
prunus_persica	Prupe.1G268600_v2.0.a1 Prupe.6G001100_v2.0.a1 Prupe.7G176600_v2.0.a1
pyrus_communis	pycom02g20940
rosa_chinensis	RchiOBHm_Chr2g0098161
rosa_laevigata	RLG00000016767
rosa_roxburghii	Rroxscaffold_2G00144240
rosa_rugosa	Rorug02G0070700 Rorug02G0070700 Rorug02G0070700
rosa_samantha	Rh2BG120900 Rh2CG122500 Rh2DG122400
rosa_wichuraiana	Rw2G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	537
AclI	AACGTT	1 cut(s)	448
AclWI	GGATC	1 cut(s)	260
AcuI	CTGAAG	2 cut(s)	209, 329
AcyI	GRCGYC	2 cut(s)	275, 392
AfaI	GTAC	3 cut(s)	415, 473, 539
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	5 cut(s)	250, 284, 422, 461, 607
AhlI	ACTAGT	1 cut(s)	374
AluBI	AGCT	4 cut(s)	15, 83, 98, 515
AluI	AGCT	4 cut(s)	15, 83, 98, 515
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	136
Asp718I	GGTACC	1 cut(s)	537
AsuHPI	GGTGA	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	537
BanII	GRGCYC	2 cut(s)	22, 223
BbsI	GAAGAC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	191
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	1 cut(s)	375
BmiI	GGNNCC	2 cut(s)	21, 539
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	278
BplI	GAGNNNNNCTC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	31
BsaHI	GRCGYC	2 cut(s)	275, 392
BsaJI	CCNNGG	2 cut(s)	326, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	278, 468
BseDI	CCNNGG	2 cut(s)	326, 387
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	156, 568
BseNI	ACTGG	2 cut(s)	278, 468
BseYI	CCCAGC	2 cut(s)	15, 437
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	537
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	22, 223
Bsp143I	GATC	1 cut(s)	265
Bsp19I	CCATGG	2 cut(s)	326, 387
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	155, 567
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	21, 539
BspPI	GGATC	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	278, 468
BssECI	CCNNGG	2 cut(s)	326, 387
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	2 cut(s)	275, 392
BssT1I	CCWWGG	2 cut(s)	326, 387
Bst6I	CTCTTC	3 cut(s)	228, 348, 423
BstACI	GRCGYC	2 cut(s)	275, 392
BstC8I	GCNNGC	2 cut(s)	49, 435
BstDEI	CTNAG	4 cut(s)	84, 105, 142, 554
BstDSI	CCRYGG	2 cut(s)	326, 387
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	2 cut(s)	326, 387
BtsCI	GGATG	1 cut(s)	472
Cac8I	GCNNGC	2 cut(s)	49, 435
CciI	TCATGA	1 cut(s)	333
CseI	GACGC	2 cut(s)	283, 381
Csp6I	GTAC	3 cut(s)	414, 472, 538
CviAII	CATG	4 cut(s)	167, 327, 334, 388
CviQI	GTAC	3 cut(s)	414, 472, 538
DdeI	CTNAG	4 cut(s)	84, 105, 142, 554
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eam1104I	CTCTTC	3 cut(s)	228, 348, 423
EarI	CTCTTC	3 cut(s)	228, 348, 423
Eco130I	CCWWGG	2 cut(s)	326, 387
Eco24I	GRGCYC	2 cut(s)	22, 223
Eco57I	CTGAAG	2 cut(s)	209, 329
EcoT14I	CCWWGG	2 cut(s)	326, 387
EcoT38I	GRGCYC	2 cut(s)	22, 223
ErhI	CCWWGG	2 cut(s)	326, 387
FaeI	CATG	4 cut(s)	170, 330, 337, 391
FatI	CATG	4 cut(s)	166, 326, 333, 387
FauNDI	CATATG	1 cut(s)	544
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	2 cut(s)	22, 223
FspBI	CTAG	1 cut(s)	375
GsaI	CCCAGC	2 cut(s)	19, 441
HaeIII	GGCC	1 cut(s)	138
HgaI	GACGC	2 cut(s)	283, 381
Hin1I	GRCGYC	2 cut(s)	275, 392
Hin1II	CATG	4 cut(s)	170, 330, 337, 391
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	1 cut(s)	509
Hpy188I	TCNGA	3 cut(s)	145, 270, 348
Hpy188III	TCNNGA	4 cut(s)	10, 227, 334, 595
HpyAV	CCTTC	2 cut(s)	202, 511
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	4 cut(s)	51, 124, 162, 590
HpyF3I	CTNAG	4 cut(s)	84, 105, 142, 554
HpySE526I	ACGT	1 cut(s)	448
Hsp92I	GRCGYC	2 cut(s)	275, 392
Hsp92II	CATG	4 cut(s)	170, 330, 337, 391
KpnI	GGTACC	1 cut(s)	541
Kzo9I	GATC	1 cut(s)	265
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	25, 95
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	6 cut(s)	108, 140, 215, 283, 335, 410
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	22, 223
MluCI	AATT	2 cut(s)	250, 456
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	5 cut(s)	149, 210, 228, 351, 436
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	456
NcoI	CCATGG	2 cut(s)	326, 387
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	4 cut(s)	170, 330, 337, 391
NlaIV	GGNNCC	2 cut(s)	21, 539
NmuCI	GTSAC	1 cut(s)	425
PagI	TCATGA	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
Psp1406I	AACGTT	1 cut(s)	448
PspFI	CCCAGC	2 cut(s)	15, 437
PspN4I	GGNNCC	2 cut(s)	21, 539
RsaI	GTAC	3 cut(s)	415, 473, 539
RsaNI	GTAC	3 cut(s)	414, 472, 538
RseI	CAYNNNNRTG	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	22, 223
SetI	ASST	9 cut(s)	17, 62, 67, 85, 100, 427, 451, 517, 522
SfaNI	GCATC	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	2 cut(s)	250, 456
SspMI	CTAG	1 cut(s)	375
StyI	CCWWGG	2 cut(s)	326, 387
TaiI	ACGT	1 cut(s)	451
TasI	AATT	2 cut(s)	250, 456
TatI	WGTACW	1 cut(s)	471
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	93
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.