Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009343

Physical Location & Seq

Genomic Coordinates Forward (+)

17513869 .. 17515463

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G176600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAAAAAGAAGAGGGTCTATCAGCTCACCCCACTCTCTCACTCACGGTTTCATCTCTGCAAATCCGAACCCAGCGCAACATCTTCAGACTGAAAGGCATGGTTTTCTTGAGCTGGATTAGGCCAAGTCCTGAAGAACAAAAGGCTTGCATTGACAGGTCAGGTAGCTTTAACTATGAGGCTAAATTCAGGGGAGCTACTACTAAGTCCCTGTCTTCCCTCCAAGAAGACAAGGGGCTCTCAAACAATGGTTTCTTGTTCAACCATGCGCGCGTTTTGGTTGGTTCTGGTGTTGACACTTATGAAAAGGGCAAGAGAGCTCTTCAGGACTGGAGGCATTTTGGACTGAATTGGGCATTTGTTGACCCAAAGACGCCGGTTCAAAATGGAGTTAAGTTCTGTGTTTGCGTCAAGGAGTTTCTGCCATGGGTCATGATGCCTCTTCAGGTTGTATATGTAAATGAAAATAGACCTAGTAAACAGTCCATGGCCTCTTTTCGTTTCGGAGGTGGTACCCTTCAAGGCCACTTGCTGGCTGGGGAAGAGCGATTCTCAATCGAACTGGATGAGAACAACCAAGTGTGGTACGAAATACTTTCCTTCTCAAAACCAGCTCACCCTTTGTCATTTATTGGATACCCATATGTAATGCTTAGGCAAAAGTACTTTGCTCATCAATCTTCTAATGCAATTATGAAACATTTGAATGCTTTGAAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1990

Protein Analysis

241

Amino Acids

27.34

Weight (kDa)

9.58

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17695 AT2G17695 AT2G17695
fragaria_vesca	FvH4_1g10900 FvH4_1g10900 FvH4_1g10900 FvH4_1g10900
malus_domestica	MD02G1242600.v1.1
prunus_persica	Prupe.1G268600_v2.0.a1 Prupe.6G001100_v2.0.a1 Prupe.7G176600_v2.0.a1
pyrus_communis	pycom02g20940
rosa_chinensis	RchiOBHm_Chr2g0098161
rosa_laevigata	RLG00000016767
rosa_roxburghii	Rroxscaffold_2G00144240
rosa_rugosa	Rorug02G0070700 Rorug02G0070700 Rorug02G0070700
rosa_samantha	Rh2BG120900 Rh2CG122500 Rh2DG122400
rosa_wichuraiana	Rw2G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccII	CGCG	2 cut(s)	271, 273
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	4 cut(s)	70, 153, 308, 428
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	3 cut(s)	514, 587, 665
AfiI	CCNNNNNNNGG	1 cut(s)	532
AgsI	TTSAA	5 cut(s)	262, 383, 521, 706, 715
AluBI	AGCT	6 cut(s)	26, 114, 168, 197, 320, 614
AluI	AGCT	6 cut(s)	26, 114, 168, 197, 320, 614
Alw21I	GWGCWC	1 cut(s)	322
AoxI	GGCC	3 cut(s)	122, 489, 523
ApoI	RAATTY	1 cut(s)	185
Asp718I	GGTACC	1 cut(s)	512
AspLEI	GCGC	3 cut(s)	78, 271, 273
AsuHPI	GGTGA	2 cut(s)	20, 608
BanI	GGYRCC	1 cut(s)	512
BanII	GRGCYC	2 cut(s)	240, 322
BbsI	GAAGAC	2 cut(s)	207, 234
Bbv12I	GWGCWC	1 cut(s)	322
BciVI	GTATCC	1 cut(s)	629
BfaI	CTAG	2 cut(s)	474, 721
BfuI	GTATCC	1 cut(s)	629
BmcAI	AGTACT	1 cut(s)	665
BmiI	GGNNCC	1 cut(s)	514
BmsI	GCATC	1 cut(s)	426
BpiI	GAAGAC	2 cut(s)	207, 234
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpmI	CTGGAG	1 cut(s)	352
Bpu10I	CCTNAGC	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	425, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
Bse118I	RCCGGY	1 cut(s)	376
Bse1I	ACTGG	2 cut(s)	335, 567
BseDI	CCNNGG	2 cut(s)	425, 486
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseNI	ACTGG	2 cut(s)	335, 567
BsePI	GCGCGC	1 cut(s)	269
BseYI	CCCAGC	2 cut(s)	72, 536
Bsh1236I	CGCG	2 cut(s)	271, 273
BshFI	GGCC	3 cut(s)	124, 491, 525
BshNI	GGYRCC	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	3 cut(s)	124, 491, 525
Bsp1286I	GDGCHC	2 cut(s)	240, 322
Bsp19I	CCATGG	2 cut(s)	425, 486
BspANI	GGCC	3 cut(s)	124, 491, 525
BspFNI	CGCG	2 cut(s)	271, 273
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	514
BspQI	GCTCTTC	2 cut(s)	327, 537
BspT107I	GGYRCC	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	335, 567
BssAI	RCCGGY	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	425, 486
BssHII	GCGCGC	1 cut(s)	269
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	2 cut(s)	425, 486
Bst4CI	ACNGT	2 cut(s)	49, 483
Bst6I	CTCTTC	4 cut(s)	6, 327, 447, 537
BstACI	GRCGYC	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	148, 271, 534
BstDEI	CTNAG	2 cut(s)	204, 653
BstDSI	CCRYGG	2 cut(s)	425, 486
BstF5I	GGATG	1 cut(s)	571
BstFNI	CGCG	2 cut(s)	271, 273
BstHHI	GCGC	3 cut(s)	78, 271, 273
BstUI	CGCG	2 cut(s)	271, 273
BstV2I	GAAGAC	2 cut(s)	207, 234
BsuI	GTATCC	1 cut(s)	629
BsuRI	GGCC	3 cut(s)	124, 491, 525
BtgI	CCRYGG	2 cut(s)	425, 486
BtsCI	GGATG	1 cut(s)	571
Cac8I	GCNNGC	3 cut(s)	148, 271, 534
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	3 cut(s)	78, 271, 273
Cfr10I	RCCGGY	1 cut(s)	376
CseI	GACGC	2 cut(s)	382, 397
Csp6I	GTAC	3 cut(s)	513, 586, 664
CviAII	CATG	5 cut(s)	100, 266, 426, 433, 487
CviQI	GTAC	3 cut(s)	513, 586, 664
DdeI	CTNAG	2 cut(s)	204, 653
Eam1104I	CTCTTC	4 cut(s)	6, 327, 447, 537
EarI	CTCTTC	4 cut(s)	6, 327, 447, 537
Ecl136II	GAGCTC	1 cut(s)	320
Eco130I	CCWWGG	2 cut(s)	425, 486
Eco24I	GRGCYC	2 cut(s)	240, 322
Eco53kI	GAGCTC	1 cut(s)	320
Eco57I	CTGAAG	4 cut(s)	70, 153, 308, 428
EcoICRI	GAGCTC	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	425, 486
EcoT38I	GRGCYC	2 cut(s)	240, 322
ErhI	CCWWGG	2 cut(s)	425, 486
FaeI	CATG	5 cut(s)	103, 269, 429, 436, 490
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	5 cut(s)	99, 265, 425, 432, 486
FauNDI	CATATG	1 cut(s)	643
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	2 cut(s)	240, 322
FspBI	CTAG	2 cut(s)	474, 721
GlaI	GCGC	3 cut(s)	77, 270, 272
GsaI	CCCAGC	2 cut(s)	76, 540
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	124, 491, 525
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	2 cut(s)	382, 397
HhaI	GCGC	3 cut(s)	78, 271, 273
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	5 cut(s)	103, 269, 429, 436, 490
Hin6I	GCGC	3 cut(s)	76, 269, 271
HinP1I	GCGC	3 cut(s)	76, 269, 271
HincII	GTYRAC	2 cut(s)	295, 364
HindII	GTYRAC	2 cut(s)	295, 364
HinfI	GANTC	1 cut(s)	549
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	20, 608
Hpy166II	GTNNAC	3 cut(s)	295, 364, 479
Hpy188I	TCNGA	3 cut(s)	68, 89, 506
Hpy188III	TCNNGA	4 cut(s)	109, 131, 326, 433
Hpy8I	GTNNAC	3 cut(s)	295, 364, 479
HpyAV	CCTTC	2 cut(s)	527, 610
HpyCH4III	ACNGT	2 cut(s)	49, 483
HpyCH4V	TGCA	3 cut(s)	61, 150, 689
HpyF3I	CTNAG	2 cut(s)	204, 653
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	5 cut(s)	103, 269, 429, 436, 490
HspAI	GCGC	3 cut(s)	76, 269, 271
KpnI	GGTACC	1 cut(s)	516
LguI	GCTCTTC	2 cut(s)	327, 537
LmnI	GCTCC	1 cut(s)	194
LweI	GCATC	1 cut(s)	426
MaeI	CTAG	2 cut(s)	474, 721
MboII	GAAGA	9 cut(s)	23, 76, 146, 207, 239, 314, 434, 554, 672
MhlI	GDGCHC	2 cut(s)	240, 322
MluCI	AATT	3 cut(s)	185, 349, 690
MnlI	CCTC	7 cut(s)	7, 172, 230, 327, 450, 500, 502
MseI	TTAA	2 cut(s)	171, 393
MslI	CAYNNNNRTG	1 cut(s)	705
MspI	CCGG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	712
MvnI	CGCG	2 cut(s)	271, 273
NcoI	CCATGG	2 cut(s)	425, 486
NdeI	CATATG	1 cut(s)	643
NlaIII	CATG	5 cut(s)	103, 269, 429, 436, 490
NlaIV	GGNNCC	1 cut(s)	514
PagI	TCATGA	1 cut(s)	432
PauI	GCGCGC	1 cut(s)	269
PciSI	GCTCTTC	2 cut(s)	327, 537
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	549
PflMI	CCANNNNNTGG	1 cut(s)	532
Psp124BI	GAGCTC	1 cut(s)	322
PspFI	CCCAGC	2 cut(s)	72, 536
PspN4I	GGNNCC	1 cut(s)	514
PteI	GCGCGC	1 cut(s)	269
RsaI	GTAC	3 cut(s)	514, 587, 665
RsaNI	GTAC	3 cut(s)	513, 586, 664
RseI	CAYNNNNRTG	1 cut(s)	705
SacI	GAGCTC	1 cut(s)	322
SapI	GCTCTTC	2 cut(s)	327, 537
SaqAI	TTAA	2 cut(s)	171, 393
ScaI	AGTACT	1 cut(s)	665
SduI	GDGCHC	2 cut(s)	240, 322
SfaNI	GCATC	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	3 cut(s)	185, 349, 690
SspMI	CTAG	2 cut(s)	474, 721
SstI	GAGCTC	1 cut(s)	322
StyI	CCWWGG	2 cut(s)	425, 486
TaaI	ACNGT	2 cut(s)	49, 483
TaqI	TCGA	1 cut(s)	558
TasI	AATT	3 cut(s)	185, 349, 690
TatI	WGTACW	1 cut(s)	663
TfiI	GAWTC	1 cut(s)	549
Tru1I	TTAA	2 cut(s)	171, 393
Tru9I	TTAA	2 cut(s)	171, 393
TspDTI	ATGAA	5 cut(s)	17, 42, 318, 477, 710
Van91I	CCANNNNNTGG	1 cut(s)	532
XapI	RAATTY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XspI	CTAG	2 cut(s)	474, 721
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.