Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009343

Physical Location & Seq

Genomic Coordinates Forward (+)

207253 .. 208469

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G001100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTTTTCTTGAGCTGGATTAGGCCAAGTCCTGAAGAACAAAAGGCTTGCATTGACAGGTCAGGTAGCTTTAACTATGAGGCTAAATTCAGGGGAGCTACTACTAAGTCCCTGTCTTCCCTCCAAGAAGACAAGGGGCTCTCAAACAATGGTTTCTTGTTCAACCATATGCGCGTTTTGGTTGGTTCTGGTGTTGACACTTATGAAAAGGGCAAGAGAGCTCTTCAGGACTGGAGGCATTTTGGACTGAATTGGGCATTTGTTGACCCAAAGACGCCGGTTCAAAATGGAGTTAAGTTCTGTGTTTGCGCGGATGATGATGAATATGCAGATCAGGACCAGAAGTTTCTTGATCCTTATCATACAATTACATCAGGACTTGAAGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1990

Protein Analysis

131

Amino Acids

14.76

Weight (kDa)

5.3

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17695 AT2G17695 AT2G17695
fragaria_vesca	FvH4_1g10900 FvH4_1g10900 FvH4_1g10900 FvH4_1g10900
malus_domestica	MD02G1242600.v1.1
prunus_persica	Prupe.1G268600_v2.0.a1 Prupe.6G001100_v2.0.a1 Prupe.7G176600_v2.0.a1
pyrus_communis	pycom02g20940
rosa_chinensis	RchiOBHm_Chr2g0098161
rosa_laevigata	RLG00000016767
rosa_roxburghii	Rroxscaffold_2G00144240
rosa_rugosa	Rorug02G0070700 Rorug02G0070700 Rorug02G0070700
rosa_samantha	Rh2BG120900 Rh2CG122500 Rh2DG122400
rosa_wichuraiana	Rw2G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	174, 311
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	2 cut(s)	347, 380
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	2 cut(s)	54, 209
AcyI	GRCGYC	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	163, 284, 383
AluBI	AGCT	4 cut(s)	15, 69, 98, 221
AluI	AGCT	4 cut(s)	15, 69, 98, 221
Alw21I	GWGCWC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	347, 380
AoxI	GGCC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	2 cut(s)	174, 311
AspS9I	GGNCC	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	141, 223
BbsI	GAAGAC	2 cut(s)	108, 135
Bbv12I	GWGCWC	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BpiI	GAAGAC	2 cut(s)	108, 135
BpmI	CTGGAG	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	357
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	236
Bsh1236I	CGCG	2 cut(s)	174, 311
BshFI	GGCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	141, 223
Bsp143I	GATC	3 cut(s)	331, 352, 385
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	1 cut(s)	25
BspFNI	CGCG	2 cut(s)	174, 311
BspPI	GGATC	2 cut(s)	347, 380
BspQI	GCTCTTC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	277
BssMI	GATC	3 cut(s)	331, 352, 385
BssNI	GRCGYC	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	2 cut(s)	174, 311
BstHHI	GCGC	2 cut(s)	174, 311
BstKTI	GATC	3 cut(s)	334, 355, 388
BstMBI	GATC	3 cut(s)	331, 352, 385
BstUI	CGCG	2 cut(s)	174, 311
BstV2I	GAAGAC	2 cut(s)	108, 135
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	2 cut(s)	174, 311
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	1 cut(s)	283
CviJI	RGCY	8 cut(s)	15, 25, 47, 69, 83, 98, 139, 221
CviKI_1	RGCY	8 cut(s)	15, 25, 47, 69, 83, 98, 139, 221
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	3 cut(s)	333, 354, 387
DpnII	GATC	3 cut(s)	331, 352, 385
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	221
Eco24I	GRGCYC	2 cut(s)	141, 223
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	54, 209
EcoICRI	GAGCTC	1 cut(s)	221
EcoT38I	GRGCYC	2 cut(s)	141, 223
FaiI	YATR	6 cut(s)	78, 168, 170, 204, 327, 363
FaqI	GGGAC	1 cut(s)	94
FauNDI	CATATG	1 cut(s)	168
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	2 cut(s)	141, 223
GlaI	GCGC	2 cut(s)	173, 310
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	2 cut(s)	174, 311
Hin1I	GRCGYC	1 cut(s)	275
Hin6I	GCGC	2 cut(s)	172, 309
HinP1I	GCGC	2 cut(s)	172, 309
HincII	GTYRAC	2 cut(s)	196, 265
HindII	GTYRAC	2 cut(s)	196, 265
HpaII	CCGG	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	196, 265
Hpy188III	TCNNGA	6 cut(s)	10, 32, 227, 335, 350, 375
Hpy8I	GTNNAC	2 cut(s)	196, 265
HpyCH4V	TGCA	2 cut(s)	51, 329
HpyF3I	CTNAG	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	275
HspAI	GCGC	2 cut(s)	172, 309
Kzo9I	GATC	3 cut(s)	331, 352, 385
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	95
MalI	GATC	3 cut(s)	333, 354, 387
MboI	GATC	3 cut(s)	331, 352, 385
MboII	GAAGA	4 cut(s)	47, 108, 140, 215
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	141, 223
MluCI	AATT	3 cut(s)	86, 250, 366
MnlI	CCTC	3 cut(s)	73, 131, 228
MseI	TTAA	2 cut(s)	72, 294
MspI	CCGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	174, 311
NdeI	CATATG	1 cut(s)	168
NdeII	GATC	3 cut(s)	331, 352, 385
PciSI	GCTCTTC	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	72, 294
Sau3AI	GATC	3 cut(s)	331, 352, 385
Sau96I	GGNCC	1 cut(s)	337
SduI	GDGCHC	2 cut(s)	141, 223
SetI	ASST	6 cut(s)	17, 62, 67, 71, 100, 223
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	86, 250, 366
SsiI	CCGC	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	223
TasI	AATT	3 cut(s)	86, 250, 366
Tru1I	TTAA	2 cut(s)	72, 294
Tru9I	TTAA	2 cut(s)	72, 294
TspDTI	ATGAA	2 cut(s)	219, 336
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.