Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009343

Physical Location & Seq

Genomic Coordinates Reverse (-)

10611346 .. 10614031

Gene Structure 2686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47297

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTTTTCTTGAGCTGGGCTCCCCCAACTCCTAAGGAACAAAAGGCTTGCATTGACAGGTCAGGTGGCTTTAACTATGAAGCTAAGTTCAGGGGAGCTACTGCTAAGTCCTTATCTTCCCTGCAAGAAGATAAGGGCCTCTCAGAAAATGGTTTCTTATGCAACCATGCCCGCGTTTTGGTCGGTTCAGGTTTGGAGACTTATGAGAAGGGCAAGAGGGCTCTTCAGGATTGGAGGCATTTTGGATTGAATTGGGCGTTTGTTGATCCGAAGACGCCAGTTCAAAATGGAGTGAAGTTTTGTGTTTGTGTCAAGGAGTTTCTGCCATGGGTCATGATGCCTCTTCAGATAGTGTATGTGAATGAGAATAGAAGTAGTAAAGAGTCCATGGCGTCTTTTCGTTTTGGAGGTGGTACTCTTCAAGGTCACTTGCTGGCTGGGGAGGAACGTTTCTCAATTGAACTGGATGAGTACAACCAAGTGTGTGTTCAACTCAAGTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1990

Protein Analysis

168

Amino Acids

18.96

Weight (kDa)

8.27

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1990	PF09348	47 - 165	2.6e-24	Domain of unknown function (DUF1990)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17695 AT2G17695 AT2G17695
fragaria_vesca	FvH4_1g10900 FvH4_1g10900 FvH4_1g10900 FvH4_1g10900
malus_domestica	MD02G1242600.v1.1
prunus_persica	Prupe.1G268600_v2.0.a1 Prupe.6G001100_v2.0.a1 Prupe.7G176600_v2.0.a1
pyrus_communis	pycom02g20940
rosa_chinensis	RchiOBHm_Chr2g0098161
rosa_laevigata	RLG00000016767
rosa_roxburghii	Rroxscaffold_2G00144240
rosa_rugosa	Rorug02G0070700 Rorug02G0070700 Rorug02G0070700
rosa_samantha	Rh2BG120900 Rh2CG122500 Rh2DG122400
rosa_wichuraiana	Rw2G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	174
AciI	CCGC	1 cut(s)	172
AclI	AACGTT	1 cut(s)	448
AclWI	GGATC	1 cut(s)	260
AcuI	CTGAAG	2 cut(s)	209, 329
AcyI	GRCGYC	2 cut(s)	275, 392
AfaI	GTAC	2 cut(s)	415, 473
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	5 cut(s)	250, 284, 422, 461, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	3 cut(s)	15, 83, 98
AluI	AGCT	3 cut(s)	15, 83, 98
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	136
AxyI	CCTNAGG	1 cut(s)	33
BanII	GRGCYC	2 cut(s)	22, 223
BbsI	GAAGAC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	21
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	278
BplI	GAGNNNNNCTC	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	31, 479
BsaHI	GRCGYC	2 cut(s)	275, 392
BsaJI	CCNNGG	2 cut(s)	326, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	278, 468
Bse21I	CCTNAGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	326, 387
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	278, 468
BseYI	CCCAGC	2 cut(s)	15, 437
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	22, 223
Bsp143I	GATC	1 cut(s)	265
Bsp19I	CCATGG	2 cut(s)	326, 387
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	278, 468
BssECI	CCNNGG	2 cut(s)	326, 387
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	2 cut(s)	275, 392
BssT1I	CCWWGG	2 cut(s)	326, 387
Bst6I	CTCTTC	3 cut(s)	228, 348, 423
BstACI	GRCGYC	2 cut(s)	275, 392
BstC8I	GCNNGC	3 cut(s)	49, 172, 435
BstDEI	CTNAG	4 cut(s)	33, 84, 105, 142
BstDSI	CCRYGG	2 cut(s)	326, 387
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	2 cut(s)	326, 387
BtsCI	GGATG	1 cut(s)	472
Cac8I	GCNNGC	3 cut(s)	49, 172, 435
CciI	TCATGA	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	2 cut(s)	283, 381
Csp6I	GTAC	2 cut(s)	414, 472
CviAII	CATG	4 cut(s)	167, 327, 334, 388
CviJI	RGCY	9 cut(s)	15, 20, 47, 69, 83, 98, 138, 221, 437
CviKI_1	RGCY	9 cut(s)	15, 20, 47, 69, 83, 98, 138, 221, 437
CviQI	GTAC	2 cut(s)	414, 472
DdeI	CTNAG	4 cut(s)	33, 84, 105, 142
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eam1104I	CTCTTC	3 cut(s)	228, 348, 423
EarI	CTCTTC	3 cut(s)	228, 348, 423
Eco130I	CCWWGG	2 cut(s)	326, 387
Eco24I	GRGCYC	2 cut(s)	22, 223
Eco57I	CTGAAG	2 cut(s)	209, 329
Eco81I	CCTNAGG	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	326, 387
EcoT38I	GRGCYC	2 cut(s)	22, 223
ErhI	CCWWGG	2 cut(s)	326, 387
FaeI	CATG	4 cut(s)	170, 330, 337, 391
FaiI	YATR	8 cut(s)	78, 160, 168, 204, 328, 335, 357, 389
FatI	CATG	4 cut(s)	166, 326, 333, 387
FauI	CCCGC	1 cut(s)	179
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	2 cut(s)	22, 223
GsaI	CCCAGC	2 cut(s)	19, 441
HaeIII	GGCC	1 cut(s)	138
HgaI	GACGC	2 cut(s)	283, 381
Hin1I	GRCGYC	2 cut(s)	275, 392
Hin1II	CATG	4 cut(s)	170, 330, 337, 391
HinfI	GANTC	1 cut(s)	383
Hpy188I	TCNGA	3 cut(s)	145, 270, 348
Hpy188III	TCNNGA	3 cut(s)	10, 227, 334
HpyAV	CCTTC	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	3 cut(s)	51, 124, 162
HpyF3I	CTNAG	4 cut(s)	33, 84, 105, 142
HpySE526I	ACGT	1 cut(s)	448
Hsp92I	GRCGYC	2 cut(s)	275, 392
Hsp92II	CATG	4 cut(s)	170, 330, 337, 391
Kzo9I	GATC	1 cut(s)	265
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	25, 95
LweI	GCATC	1 cut(s)	327
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	6 cut(s)	108, 140, 215, 283, 335, 410
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	22, 223
MluCI	AATT	2 cut(s)	250, 456
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	6 cut(s)	149, 210, 228, 351, 401, 436
MseI	TTAA	1 cut(s)	72
MunI	CAATTG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	174
NcoI	CCATGG	2 cut(s)	326, 387
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	4 cut(s)	170, 330, 337, 391
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	425
PagI	TCATGA	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
Psp1406I	AACGTT	1 cut(s)	448
PspFI	CCCAGC	2 cut(s)	15, 437
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	136
RsaI	GTAC	2 cut(s)	415, 473
RsaNI	GTAC	2 cut(s)	414, 472
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	22, 223
SetI	ASST	9 cut(s)	17, 62, 67, 85, 100, 193, 412, 427, 451
SfaNI	GCATC	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	10, 494
SmoI	CTYRAG	2 cut(s)	10, 494
Sse9I	AATT	2 cut(s)	250, 456
SsiI	CCGC	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	326, 387
TaiI	ACGT	1 cut(s)	451
TasI	AATT	2 cut(s)	250, 456
TatI	WGTACW	1 cut(s)	471
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	93, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.