Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009343

Physical Location & Seq

Genomic Coordinates Forward (+)

19025597 .. 19026604

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAGCACAAACATTCTTCTGCTCAATGTTTCATTTTTAATACTACGGATGCGTTTGGCAGGCATGGTTTTCTTGAGCTGGGGCAGGCCAACTCCTCAGGAACAAAAAGCTTGCATTGACAGGTCAGGTAGCTTTAACTATGACCCTAAATTCAAGGGAGCTACTGCCAAGTCCCTGTCTTCCCTCCAAGAAGATAAAGGCCTCTCAAAAGATGGCTTCTTGTTAAACCATTCTCGCAATTTGGTTGGTTCAGGTCTGGACACTTATGAAAAGGGCAAGACGGCTCTTCAGGACTGGAGGCATTTTGGATTGAATTGGGCATTTGTTGATCCGAAGACGCCAGTTCAAAATGGAGTGAAGTTTTGTGTTTGCGTCAAGGAGTTTCTGCCATGGGTCATGATGCCTCTCCAGGTTGTATATGTGAATGAAAATAAAAGAAGTAAACAGGCCATGGCATCTTTCCGTTTTGGAGGTGGTACCCTTCAAGGTCACCTGCTGGCTGGGGAAGAACGCTTCTCAATTGAACTGGATGAGAACAACCAAGTGTGGTATGAAATACTTTCCTTCTCAAAACCAGCTCACTTGTTGTCATTCATTGGATACCCATATGTAATGCTTAGGCAGAAGTACTTTGCTCATCAATCTACTAATGCAATCATGAAACATCTGAATGCTTCAAAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1990

Protein Analysis

229

Amino Acids

25.88

Weight (kDa)

9.49

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17695 AT2G17695 AT2G17695
fragaria_vesca	FvH4_1g10900 FvH4_1g10900 FvH4_1g10900 FvH4_1g10900
malus_domestica	MD02G1242600.v1.1
prunus_persica	Prupe.1G268600_v2.0.a1 Prupe.6G001100_v2.0.a1 Prupe.7G176600_v2.0.a1
pyrus_communis	pycom02g20940
rosa_chinensis	RchiOBHm_Chr2g0098161
rosa_laevigata	RLG00000016767
rosa_roxburghii	Rroxscaffold_2G00144240
rosa_rugosa	Rorug02G0070700 Rorug02G0070700 Rorug02G0070700
rosa_samantha	Rh2BG120900 Rh2CG122500 Rh2DG122400
rosa_wichuraiana	Rw2G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	501
Acc36I	ACCTGC	1 cut(s)	501
Acc65I	GGTACC	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	476
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	338
AfaI	GTAC	2 cut(s)	478, 629
AgsI	TTSAA	6 cut(s)	154, 313, 347, 485, 524, 678
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	5 cut(s)	78, 110, 132, 161, 578
AluI	AGCT	5 cut(s)	78, 110, 132, 161, 578
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	3 cut(s)	86, 199, 447
ApoI	RAATTY	1 cut(s)	149
Asp718I	GGTACC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	482
AxyI	CCTNAGG	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	476
BbsI	GAAGAC	2 cut(s)	171, 341
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	297
BciT130I	CCWGG	1 cut(s)	410
BciVI	GTATCC	1 cut(s)	593
BfaI	CTAG	1 cut(s)	685
BfuAI	ACCTGC	1 cut(s)	501
BfuI	GTATCC	1 cut(s)	593
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	3 cut(s)	39, 390, 464
BpiI	GAAGAC	2 cut(s)	171, 341
BpmI	CTGGAG	2 cut(s)	316, 392
Bpu10I	CCTNAGC	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	389, 450
Bse1I	ACTGG	3 cut(s)	299, 341, 531
Bse21I	CCTNAGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	389, 450
BseGI	GGATG	2 cut(s)	54, 535
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	3 cut(s)	299, 341, 531
BseRI	GAGGAG	1 cut(s)	84
BseYI	CCCAGC	2 cut(s)	78, 500
BshFI	GGCC	3 cut(s)	88, 201, 449
BshNI	GGYRCC	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	3 cut(s)	88, 201, 449
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	328
Bsp19I	CCATGG	2 cut(s)	389, 450
BspANI	GGCC	3 cut(s)	88, 201, 449
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	2 cut(s)	396, 657
BspLI	GGNNCC	1 cut(s)	478
BspMI	ACCTGC	1 cut(s)	501
BspPI	GGATC	1 cut(s)	323
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	476
BsrI	ACTGG	3 cut(s)	299, 341, 531
BssECI	CCNNGG	2 cut(s)	389, 450
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	338
BssT1I	CCWWGG	2 cut(s)	389, 450
Bst2UI	CCWGG	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	4 cut(s)	61, 86, 112, 498
BstDEI	CTNAG	2 cut(s)	96, 617
BstDSI	CCRYGG	2 cut(s)	389, 450
BstEII	GGTNACC	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	54, 535
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstNI	CCWGG	1 cut(s)	410
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	408
BstV2I	GAAGAC	2 cut(s)	171, 341
Bsu36I	CCTNAGG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	593
BsuRI	GGCC	3 cut(s)	88, 201, 449
BtgI	CCRYGG	2 cut(s)	389, 450
BtsCI	GGATG	2 cut(s)	54, 535
BveI	ACCTGC	1 cut(s)	501
Cac8I	GCNNGC	4 cut(s)	61, 86, 112, 498
CciI	TCATGA	2 cut(s)	396, 657
CseI	GACGC	2 cut(s)	346, 361
Csp6I	GTAC	2 cut(s)	477, 628
CviAII	CATG	5 cut(s)	64, 390, 397, 451, 658
CviQI	GTAC	2 cut(s)	477, 628
DdeI	CTNAG	2 cut(s)	96, 617
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	389, 450
Eco147I	AGGCCT	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	96
Eco91I	GGTNACC	1 cut(s)	488
EcoO65I	GGTNACC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	2 cut(s)	389, 450
ErhI	CCWWGG	2 cut(s)	389, 450
FaeI	CATG	5 cut(s)	67, 393, 400, 454, 661
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	5 cut(s)	63, 389, 396, 450, 657
FauNDI	CATATG	1 cut(s)	607
FokI	GGATG	2 cut(s)	61, 542
FspBI	CTAG	1 cut(s)	685
GsaI	CCCAGC	2 cut(s)	82, 504
GsuI	CTGGAG	2 cut(s)	316, 392
HaeIII	GGCC	3 cut(s)	88, 201, 449
HgaI	GACGC	2 cut(s)	346, 361
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	5 cut(s)	67, 393, 400, 454, 661
HindIII	AAGCTT	1 cut(s)	108
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	333, 669
Hpy188III	TCNNGA	6 cut(s)	73, 98, 257, 290, 397, 658
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	2 cut(s)	491, 574
HpyCH4V	TGCA	2 cut(s)	114, 653
HpyF3I	CTNAG	2 cut(s)	96, 617
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	5 cut(s)	67, 393, 400, 454, 661
KpnI	GGTACC	1 cut(s)	480
Kzo9I	GATC	1 cut(s)	328
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	158
LweI	GCATC	3 cut(s)	39, 390, 464
MaeI	CTAG	1 cut(s)	685
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	6 cut(s)	8, 171, 203, 278, 346, 518
MfeI	CAATTG	1 cut(s)	519
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	149, 238, 313, 519
MnlI	CCTC	6 cut(s)	105, 194, 212, 291, 414, 464
MseI	TTAA	3 cut(s)	38, 135, 224
MslI	CAYNNNNRTG	1 cut(s)	669
MspR9I	CCNGG	1 cut(s)	410
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	410
NcoI	CCATGG	2 cut(s)	389, 450
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	5 cut(s)	67, 393, 400, 454, 661
NlaIV	GGNNCC	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	488
PagI	TCATGA	2 cut(s)	396, 657
PaqCI	CACCTGC	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	291
PctI	GAATGC	1 cut(s)	676
Psp6I	CCWGG	1 cut(s)	408
PspEI	GGTNACC	1 cut(s)	488
PspFI	CCCAGC	2 cut(s)	78, 500
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	478
RsaI	GTAC	2 cut(s)	478, 629
RsaNI	GTAC	2 cut(s)	477, 628
RseI	CAYNNNNRTG	1 cut(s)	669
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	38, 135, 224
Sau3AI	GATC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	629
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	39, 390, 464
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	4 cut(s)	149, 238, 313, 519
SseBI	AGGCCT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	685
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	2 cut(s)	389, 450
TasI	AATT	4 cut(s)	149, 238, 313, 519
TatI	WGTACW	1 cut(s)	627
Tru1I	TTAA	3 cut(s)	38, 135, 224
Tru9I	TTAA	3 cut(s)	38, 135, 224
TseFI	GTSAC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	6 cut(s)	21, 282, 441, 567, 583, 674
TspGWI	ACGGA	2 cut(s)	61, 452
XapI	RAATTY	1 cut(s)	149
XspI	CTAG	1 cut(s)	685
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.