Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006207

Physical Location & Seq

Genomic Coordinates Forward (+)

7703805 .. 7705831

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCCTCGTCATCATCATCATCTTATAGATTCCAATCTGGGTCTTACCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTCGTCGAACGCATTAAAGACGCTTGTCATTTCCTTGTCTCTGCTGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCGGGAGCTGTTTTCTCTATCGAGGTCTTTGAATCATCTCTGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTGGTCCTGCAATGCTAAGTGCAGTGCAAAGTCAAATGGGAGCTGTGGATACAGCTTTTGATGATCACACAAGCCTTTTTGATACAGGAGGCTCAAAAGGATTGACAGGAGACCTTGTTGAGAAAATCCCAAAGATGACAATCACTGGCAACAATAACACTGATGCTTCTGAGAACACAGACTCATGTTCTGTTTGTCTTCAGGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACGGTTCTTGCCCGATGTGTAGACGTGATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gly-zipper_Omp Gly-zipper_OmpA Gly-zipper_YMGG zf-RING_2

Protein Analysis

241

Amino Acids

25.8

Weight (kDa)

5.12

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gly-zipper_YMGG	PF13441	56 - 91	1.3e-07	YMGG-like Gly-zipper
zf-RING_2	PF13639	194 - 231	1.6e-08	Ring finger domain
zf-RING_11	PF17123	196 - 224	3.1e-08	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17730 AT2G17730 AT4G35840 AT4G35840 AT5G66070 AT5G66070 AT5G66070 AT5G66070 AT5G66070
fragaria_vesca	FvH4_1g11120 FvH4_1g11120 FvH4_1g11120
malus_domestica	MD02G1123800.v1.1 MD15G1237800.v1.1
prunus_persica	Prupe.7G174700_v2.0.a1 Prupe.7G174700_v2.0.a1
pyrus_communis	pycom15g21160
rosa_chinensis	RchiOBHm_Chr2g0098401
rosa_laevigata	RLG00000016796
rosa_multiflora	Rmu_ssc0000196.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144010
rosa_rugosa	Rorug02G0072900.1
rosa_samantha	Rh2AG119900 Rh2BG123000 Rh2CG124600 Rh2DG124700
rosa_wichuraiana	Rw2G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	712
AccII	CGCG	1 cut(s)	146
AciI	CCGC	2 cut(s)	144, 378
AclWI	GGATC	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	133, 390
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	1 cut(s)	293
AhlI	ACTAGT	1 cut(s)	169
AjiI	CACGTC	1 cut(s)	716
AluBI	AGCT	6 cut(s)	203, 269, 443, 455, 613, 633
AluI	AGCT	6 cut(s)	203, 269, 443, 455, 613, 633
Alw26I	GTCTC	3 cut(s)	121, 376, 504
AlwI	GGATC	1 cut(s)	312
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	404
BaeGI	GKGCMC	2 cut(s)	179, 193
BanI	GGYRCC	1 cut(s)	131
BbsI	GAAGAC	2 cut(s)	362, 590
BbvI	GCAGC	1 cut(s)	257
BciVI	GTATCC	1 cut(s)	442
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	121, 376, 504
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	2 cut(s)	170, 185
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	404
BmgBI	CACGTC	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	3 cut(s)	133, 256, 683
BmsI	GCATC	1 cut(s)	553
BoxI	GACNNNNGTC	1 cut(s)	102
BpiI	GAAGAC	2 cut(s)	362, 590
BsaBI	GATNNNNATC	2 cut(s)	34, 539
BsaI	GGTCTC	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	550
Bse3DI	GCAATG	2 cut(s)	179, 417
Bse8I	GATNNNNATC	2 cut(s)	34, 539
BseGI	GGATG	1 cut(s)	341
BseJI	GATNNNNATC	2 cut(s)	34, 539
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	2 cut(s)	179, 417
BseMII	CTCAG	2 cut(s)	213, 561
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	1 cut(s)	255
BseSI	GKGCMC	2 cut(s)	179, 193
BseXI	GCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	3 cut(s)	121, 376, 504
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	504
Bsp1286I	GDGCHC	2 cut(s)	179, 193
Bsp143I	GATC	3 cut(s)	147, 304, 463
BspACI	CCGC	2 cut(s)	144, 378
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	214, 562
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	133, 256, 683
BspPI	GGATC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	504
BsrDI	GCAATG	2 cut(s)	179, 417
BsrI	ACTGG	1 cut(s)	550
BssMI	GATC	3 cut(s)	147, 304, 463
Bst4CI	ACNGT	2 cut(s)	625, 695
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	5 cut(s)	222, 374, 416, 570, 686
BstF5I	GGATG	1 cut(s)	341
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	3 cut(s)	150, 307, 466
BstMAI	GTCTC	3 cut(s)	121, 376, 504
BstMBI	GATC	3 cut(s)	147, 304, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	655
BstPAI	GACNNNNGTC	1 cut(s)	102
BstSLI	GKGCMC	2 cut(s)	179, 193
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	2 cut(s)	362, 590
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	716
BtsCI	GGATG	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	429, 543, 558
Cac8I	GCNNGC	1 cut(s)	635
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	404
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	132, 389
CviAII	CATG	2 cut(s)	585, 652
CviQI	GTAC	2 cut(s)	132, 389
DdeI	CTNAG	5 cut(s)	222, 374, 416, 570, 686
DpnI	GATC	3 cut(s)	149, 306, 465
DpnII	GATC	3 cut(s)	147, 304, 463
Eco31I	GGTCTC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	584
FaeI	CATG	2 cut(s)	588, 655
FaiI	YATR	4 cut(s)	27, 586, 653, 671
FatI	CATG	2 cut(s)	584, 651
FauI	CCCGC	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	170, 185
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	588, 655
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	631
HinfI	GANTC	4 cut(s)	30, 293, 323, 581
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	3 cut(s)	319, 335, 571
Hpy188III	TCNNGA	6 cut(s)	151, 215, 264, 302, 310, 602
Hpy8I	GTNNAC	1 cut(s)	713
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	75, 166
HpyCH4III	ACNGT	2 cut(s)	625, 695
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	4 cut(s)	410, 422, 427, 669
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	5 cut(s)	222, 374, 416, 570, 686
HpySE526I	ACGT	1 cut(s)	715
Hsp92II	CATG	2 cut(s)	588, 655
HspAI	GCGC	1 cut(s)	397
KpnI	GGTACC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	147, 304, 463
LmnI	GCTCC	6 cut(s)	200, 242, 254, 266, 440, 687
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	2 cut(s)	170, 185
MaeII	ACGT	1 cut(s)	715
MalI	GATC	3 cut(s)	149, 306, 465
MboI	GATC	3 cut(s)	147, 304, 463
MboII	GAAGA	4 cut(s)	151, 154, 362, 590
MfeI	CAATTG	2 cut(s)	249, 676
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	179, 193
MluCI	AATT	3 cut(s)	76, 249, 676
MlyI	GAGTC	2 cut(s)	332, 575
MnlI	CCTC	6 cut(s)	16, 60, 233, 277, 482, 648
MseI	TTAA	2 cut(s)	93, 724
MunI	CAATTG	2 cut(s)	249, 676
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	3 cut(s)	147, 304, 463
NlaIII	CATG	2 cut(s)	588, 655
NlaIV	GGNNCC	3 cut(s)	133, 256, 683
NspI	RCATGY	1 cut(s)	655
PciI	ACATGT	1 cut(s)	651
PfeI	GAWTC	2 cut(s)	30, 293
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	2 cut(s)	331, 575
PpsI	GAGTC	2 cut(s)	331, 575
PscI	ACATGT	1 cut(s)	651
PshAI	GACNNNNGTC	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	133, 256, 683
PspPI	GGNCC	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	2 cut(s)	133, 390
RsaNI	GTAC	2 cut(s)	132, 389
SaqAI	TTAA	2 cut(s)	93, 724
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	3 cut(s)	147, 304, 463
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	2 cut(s)	332, 575
SduI	GDGCHC	2 cut(s)	179, 193
SfaNI	GCATC	1 cut(s)	553
SinI	GGWCC	1 cut(s)	404
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	3 cut(s)	76, 249, 676
SsiI	CCGC	2 cut(s)	144, 378
SspMI	CTAG	2 cut(s)	170, 185
TaaI	ACNGT	2 cut(s)	625, 695
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	2 cut(s)	84, 282
TasI	AATT	3 cut(s)	76, 249, 676
TfiI	GAWTC	2 cut(s)	30, 293
Tru1I	TTAA	2 cut(s)	93, 724
Tru9I	TTAA	2 cut(s)	93, 724
TscAI	CASTG	3 cut(s)	429, 550, 565
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	223
TspRI	CASTG	3 cut(s)	429, 550, 565
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	76
XceI	RCATGY	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	712
XspI	CTAG	2 cut(s)	170, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.