Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006207

Physical Location & Seq

Genomic Coordinates Forward (+)

15142611 .. 15144203

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21160.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCAATGGATTTTATTGCGCACCCATCTCGTTTTTCTCCTTCCTGTTCGTTTTCGTTGGGTAATTTCATCGAACGGGTCAAGGATTTCTGCAACTTCGCCGTCTCTGCGGTTCTGGGGAACGTTTTCTCTGCGATCTTCACCTTCTTCTTTGCATTAGTGGGCACCGTGTTAGGAGCAATGACTGGAGCTTTGATAGGGCAAGAAACTGAGAGTGGGTTTGTGAGAGGAGCTGCAGTTGGAGCAATATCAGGAGCTGTTTTTTCAATTGAAGTGTTTGAATCTTCCCTTATTCTTTGGCAATCAGATGAATCAGGAATTGGGTGTCTTCTGTATTTGATTGATGTCATTGCTAGTCTCCTAAGCGGTAGATTAGTCCGCGAGCGGATTGGCCCCGCCATGTTAAGTGCAGTGCAAAGTCAGATGGGTGATGTGGAATCAAGCTTTGACGAGATCCCCAACATCTTCGACACTGGCGGCTCCAAAGGGTTGCCCGGAGATTCAGTTGAAAAGATCCCATCGATCAAAATCACCTGCCACAACAACGTGGATGCTTCTGGGGAGAAAGTCTCCTGTTCAGTTTGCCTTCAGGATTTTCAGCTTGGAGAGACAGTAAGAAGTTTGCCACACTGCCATCACATGTTTCACTTGCCTTGTATAGATAAGTGGCTCCTAAGGCATGGCTCATGCCCTCTCTGCAGAAGGGATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gly-zipper_Omp Gly-zipper_OmpA Gly-zipper_YMGG zf-RING_2

Protein Analysis

238

Amino Acids

25.52

Weight (kDa)

5.29

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17730 AT2G17730 AT4G35840 AT4G35840 AT5G66070 AT5G66070 AT5G66070 AT5G66070 AT5G66070
fragaria_vesca	FvH4_1g11120 FvH4_1g11120 FvH4_1g11120
malus_domestica	MD02G1123800.v1.1 MD15G1237800.v1.1
prunus_persica	Prupe.7G174700_v2.0.a1 Prupe.7G174700_v2.0.a1
pyrus_communis	pycom15g21160
rosa_chinensis	RchiOBHm_Chr2g0098401
rosa_laevigata	RLG00000016796
rosa_multiflora	Rmu_ssc0000196.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144010
rosa_rugosa	Rorug02G0072900.1
rosa_samantha	Rh2AG119900 Rh2BG123000 Rh2CG124600 Rh2DG124700
rosa_wichuraiana	Rw2G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	542
Acc16I	TGCGCA	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	385
AccII	CGCG	1 cut(s)	381
AciI	CCGC	6 cut(s)	110, 366, 379, 385, 396, 477
AclI	AACGTT	1 cut(s)	123
AclWI	GGATC	2 cut(s)	448, 508
AcuI	CTGAAG	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	4 cut(s)	267, 272, 281, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AluBI	AGCT	5 cut(s)	191, 233, 257, 444, 601
AluI	AGCT	5 cut(s)	191, 233, 257, 444, 601
Alw26I	GTCTC	4 cut(s)	109, 362, 574, 602
AlwI	GGATC	2 cut(s)	448, 508
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	233
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	3 cut(s)	133, 440, 523
AxyI	CCTNAGG	1 cut(s)	674
BaeGI	GKGCMC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	4 cut(s)	34, 418, 526, 642
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	4 cut(s)	109, 362, 574, 602
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	2 cut(s)	234, 697
BfuAI	ACCTGC	1 cut(s)	542
BisI	GCNGC	2 cut(s)	234, 478
BlsI	GCNGC	2 cut(s)	235, 479
Bme1390I	CCNGG	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	4 cut(s)	166, 394, 481, 671
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	320
BplI	GAGNNNNNCTC	2 cut(s)	554, 586
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	495
Bsa29I	ATCGAT	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	527
BsaXI	ACNNNNNCTCC	6 cut(s)	222, 252, 489, 519, 597, 627
Bse1I	ACTGG	2 cut(s)	190, 478
Bse21I	CCTNAGG	1 cut(s)	674
Bse3DI	GCAATG	3 cut(s)	12, 186, 348
Bse8I	GATNNNNATC	1 cut(s)	527
BseCI	ATCGAT	1 cut(s)	521
BseGI	GGATG	1 cut(s)	556
BseJI	GATNNNNATC	1 cut(s)	527
BseMI	GCAATG	3 cut(s)	12, 186, 348
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	2 cut(s)	190, 478
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	495
BsmAI	GTCTC	4 cut(s)	109, 362, 574, 602
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	5 cut(s)	135, 453, 513, 522, 706
BspACI	CCGC	6 cut(s)	110, 366, 379, 385, 396, 477
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	521
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	4 cut(s)	166, 394, 481, 671
BspMAI	CTGCAG	2 cut(s)	238, 701
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	2 cut(s)	448, 508
BspT107I	GGYRCC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	385
BsrDI	GCAATG	3 cut(s)	12, 186, 348
BsrI	ACTGG	2 cut(s)	190, 478
BssMI	GATC	5 cut(s)	135, 453, 513, 522, 706
Bst4CI	ACNGT	2 cut(s)	169, 613
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	210, 362, 674
BstF5I	GGATG	1 cut(s)	556
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	5 cut(s)	138, 456, 516, 525, 709
BstMAI	GTCTC	4 cut(s)	109, 362, 574, 602
BstMBI	GATC	5 cut(s)	135, 453, 513, 522, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 242, 676, 696
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	2 cut(s)	234, 697
BstSLI	GKGCMC	1 cut(s)	167
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	3 cut(s)	453, 513, 706
BstYI	RGATCY	3 cut(s)	453, 513, 706
Bsu15I	ATCGAT	1 cut(s)	521
Bsu36I	CCTNAGG	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	393
BsuTUI	ATCGAT	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	556
BtsI	GCAGTG	2 cut(s)	417, 628
BtsIMutI	CAGTG	3 cut(s)	417, 471, 628
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	1 cut(s)	383
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	392
ClaI	ATCGAT	1 cut(s)	521
CviAII	CATG	4 cut(s)	400, 640, 680, 687
CviJI	RGCY	9 cut(s)	191, 233, 257, 393, 444, 480, 601, 670, 684
CviKI_1	RGCY	9 cut(s)	191, 233, 257, 393, 444, 480, 601, 670, 684
DdeI	CTNAG	3 cut(s)	210, 362, 674
DpnI	GATC	5 cut(s)	137, 455, 515, 524, 708
DpnII	GATC	5 cut(s)	135, 453, 513, 522, 706
Eco57I	CTGAAG	1 cut(s)	572
Eco81I	CCTNAGG	1 cut(s)	674
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	4 cut(s)	403, 643, 683, 690
FaiI	YATR	5 cut(s)	401, 641, 659, 681, 688
FatI	CATG	4 cut(s)	399, 639, 679, 686
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	234, 478
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	2 cut(s)	234, 478
FspBI	CTAG	1 cut(s)	354
FspI	TGCGCA	1 cut(s)	21
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	2 cut(s)	234, 478
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	1 cut(s)	495
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	4 cut(s)	403, 643, 683, 690
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	4 cut(s)	281, 311, 437, 500
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	3 cut(s)	133, 440, 523
Hpy188I	TCNGA	2 cut(s)	307, 423
Hpy188III	TCNNGA	3 cut(s)	252, 315, 590
HpyAV	CCTTC	4 cut(s)	51, 154, 596, 696
HpyCH4III	ACNGT	2 cut(s)	169, 613
HpyCH4IV	ACGT	2 cut(s)	123, 546
HpyCH4V	TGCA	6 cut(s)	93, 155, 236, 410, 415, 699
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 242, 676, 696
HpyF3I	CTNAG	3 cut(s)	210, 362, 674
HpySE526I	ACGT	2 cut(s)	123, 546
Hsp92II	CATG	4 cut(s)	403, 643, 683, 690
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	5 cut(s)	135, 453, 513, 522, 706
LmnI	GCTCC	7 cut(s)	176, 188, 230, 242, 254, 485, 675
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	123, 546
MalI	GATC	5 cut(s)	137, 455, 515, 524, 708
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	5 cut(s)	135, 453, 513, 522, 706
MboII	GAAGA	5 cut(s)	130, 139, 276, 320, 457
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	3 cut(s)	453, 513, 706
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	3 cut(s)	64, 267, 318
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	2 cut(s)	221, 702
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	1 cut(s)	404
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	1 cut(s)	495
MunI	CAATTG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	4 cut(s)	107, 242, 676, 696
NciI	CCSGG	1 cut(s)	495
NdeII	GATC	5 cut(s)	135, 453, 513, 522, 706
NlaIII	CATG	4 cut(s)	403, 643, 683, 690
NlaIV	GGNNCC	4 cut(s)	166, 394, 481, 671
NsbI	TGCGCA	1 cut(s)	21
NspI	RCATGY	1 cut(s)	643
PaqCI	CACCTGC	1 cut(s)	542
PciI	ACATGT	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	4 cut(s)	281, 311, 437, 500
PkrI	GCNGC	2 cut(s)	235, 479
PscI	ACATGT	1 cut(s)	639
Psp1406I	AACGTT	1 cut(s)	123
PspN4I	GGNNCC	4 cut(s)	166, 394, 481, 671
PspPI	GGNCC	1 cut(s)	392
PstI	CTGCAG	2 cut(s)	238, 701
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	3 cut(s)	453, 513, 706
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	2 cut(s)	234, 478
Sau3AI	GATC	5 cut(s)	135, 453, 513, 522, 706
Sau96I	GGNCC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	9 cut(s)	126, 146, 193, 235, 259, 446, 536, 549, 603
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	2 cut(s)	234, 697
Sse9I	AATT	3 cut(s)	64, 267, 318
SsiI	CCGC	6 cut(s)	110, 366, 379, 385, 396, 477
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	493
TaaI	ACNGT	2 cut(s)	169, 613
TaiI	ACGT	2 cut(s)	126, 549
TaqI	TCGA	3 cut(s)	72, 468, 521
TasI	AATT	3 cut(s)	64, 267, 318
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	4 cut(s)	281, 311, 437, 500
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	3 cut(s)	417, 478, 635
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	58, 324
TspRI	CASTG	3 cut(s)	417, 478, 635
XceI	RCATGY	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.