Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006207

Physical Location & Seq

Genomic Coordinates Forward (+)

16980712 .. 16982550

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCCTCTTCTAGATTCCAATCTGGGTTTTGTCCTATCTCTTCGTGTCCCTCTCTTGAGAATTTCATCGAAAGGATTAAAGACGCATGTCGTTTCACCCTCTCCGCTGTTCTAGGGACAATTCTCTCGGCGGTCTTGACTTTCTTCTTCGCTTTAGTGGGCACATTGCTTGGAGCACTTACTGGAGCTTTGATAGGCCAAGAAACCGAAAGTGGGTTTATCCGAGGAGCGGCGGTTGGAGCCATTTCGGGAGCTGTTTTCTCTATCGAAGTCTTTGAGTCATCTCTTGTTCTTTGGAAATCTAATGAGTCACGTTTTGGATGTCTCCTCTACTTGATTGATGTCATTGTTAGTCTGATAAGTGGTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACCGGTGGCTCAAAGGGGTTAACAGGAGATTTGGTTGATAAAATACCTAAAATCAAAATCACTGGCAAAAACAACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGGATTTTCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATGTTTCACTTGCCTTGCATAGACAATTGGCTCTTCAGGCACGGATCTTGTCCAATGTGTAGACGCGATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gly-zipper_Omp Gly-zipper_OmpA Gly-zipper_YMGG zf-RING_2

Protein Analysis

236

Amino Acids

25.45

Weight (kDa)

6.2

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gly-zipper_YMGG	PF13441	51 - 86	1.3e-07	YMGG-like Gly-zipper
zf-RING_2	PF13639	189 - 233	5.1e-12	Ring finger domain
zf-RING_11	PF17123	191 - 219	2.8e-08	RING-like zinc finger
zf-rbx1	PF12678	204 - 233	8.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17730 AT2G17730 AT4G35840 AT4G35840 AT5G66070 AT5G66070 AT5G66070 AT5G66070 AT5G66070
fragaria_vesca	FvH4_1g11120 FvH4_1g11120 FvH4_1g11120
malus_domestica	MD02G1123800.v1.1 MD15G1237800.v1.1
prunus_persica	Prupe.7G174700_v2.0.a1 Prupe.7G174700_v2.0.a1
pyrus_communis	pycom15g21160
rosa_chinensis	RchiOBHm_Chr2g0098401
rosa_laevigata	RLG00000016796
rosa_multiflora	Rmu_ssc0000196.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144010
rosa_rugosa	Rorug02G0072900.1
rosa_samantha	Rh2AG119900 Rh2BG123000 Rh2CG124600 Rh2DG124700
rosa_wichuraiana	Rw2G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	230
AccI	GTMKAC	2 cut(s)	367, 697
AccII	CGCG	1 cut(s)	702
AciI	CCGC	6 cut(s)	105, 131, 230, 233, 376, 407
AclWI	GGATC	1 cut(s)	688
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	2 cut(s)	569, 655
AfiI	CCNNNNNNNGG	2 cut(s)	213, 229
AflIII	ACRYGT	1 cut(s)	636
AgeI	ACCGGT	1 cut(s)	470
AgsI	TTSAA	3 cut(s)	413, 438, 596
AluBI	AGCT	5 cut(s)	188, 254, 428, 451, 618
AluI	AGCT	5 cut(s)	188, 254, 428, 451, 618
Alw21I	GWGCWC	2 cut(s)	178, 453
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	688
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	2 cut(s)	3, 196
ApoI	RAATTY	1 cut(s)	61
AsiGI	ACCGGT	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	88, 614, 622
AsuII	TTCGAA	1 cut(s)	444
AvaI	CYCGRG	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	2 cut(s)	178, 453
BccI	CCATC	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	12, 113
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	1 cut(s)	538
BoxI	GACNNNNGTC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	219, 249, 486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 229
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	187, 535
Bse3DI	GCAATG	2 cut(s)	164, 402
Bse8I	GATNNNNATC	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	326
BseJI	GATNNNNATC	1 cut(s)	19
BseLI	CCNNNNNNNGG	2 cut(s)	213, 229
BseMI	GCAATG	2 cut(s)	164, 402
BseNI	ACTGG	2 cut(s)	187, 535
BseRI	GAGGAG	2 cut(s)	240, 317
BseSI	GKGCMC	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	702
BshFI	GGCC	2 cut(s)	5, 198
BshTI	ACCGGT	1 cut(s)	470
BsiHKAI	GWGCWC	2 cut(s)	178, 453
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	471
BslFI	GGGAC	2 cut(s)	33, 130
BslI	CCNNNNNNNGG	2 cut(s)	213, 229
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	2 cut(s)	33, 130
BsnI	GGCC	2 cut(s)	5, 198
BsoBI	CYCGRG	1 cut(s)	454
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	3 cut(s)	164, 178, 453
Bsp143I	GATC	2 cut(s)	680, 703
BspACI	CCGC	6 cut(s)	105, 131, 230, 233, 376, 407
BspANI	GGCC	2 cut(s)	5, 198
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	688
BspQI	GCTCTTC	2 cut(s)	441, 674
BspT104I	TTCGAA	1 cut(s)	444
BsrBI	CCGCTC	1 cut(s)	230
BsrDI	GCAATG	2 cut(s)	164, 402
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	187, 535
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	680, 703
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	4 cut(s)	13, 46, 441, 674
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	2 cut(s)	401, 544
BstF5I	GGATG	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	702
BstKTI	GATC	2 cut(s)	683, 706
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	2 cut(s)	680, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 673
BstNSI	RCATGY	2 cut(s)	90, 640
BstPAI	GACNNNNGTC	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	164
BstUI	CGCG	1 cut(s)	702
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuRI	GGCC	2 cut(s)	5, 198
BtsCI	GGATG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	620
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	1 cut(s)	92
CspAI	ACCGGT	1 cut(s)	470
CviAII	CATG	3 cut(s)	87, 570, 637
DdeI	CTNAG	2 cut(s)	401, 544
DpnI	GATC	2 cut(s)	682, 705
DpnII	GATC	2 cut(s)	680, 703
Eam1104I	CTCTTC	4 cut(s)	13, 46, 441, 674
EarI	CTCTTC	4 cut(s)	13, 46, 441, 674
Ecl136II	GAGCTC	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	2 cut(s)	569, 655
Eco88I	CYCGRG	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	453
FaeI	CATG	3 cut(s)	90, 573, 640
FaiI	YATR	4 cut(s)	88, 571, 638, 656
FaqI	GGGAC	2 cut(s)	33, 130
FatI	CATG	3 cut(s)	86, 569, 636
FauI	CCCGC	1 cut(s)	369
FblI	GTMKAC	2 cut(s)	367, 697
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	333
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	12, 113
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	5, 198
HapII	CCGG	1 cut(s)	471
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	90, 573, 640
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HindIII	AAGCTT	1 cut(s)	616
HinfI	GANTC	5 cut(s)	15, 278, 308, 434, 566
HpaI	GTTAAC	1 cut(s)	489
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	3 cut(s)	88, 614, 622
Hpy166II	GTNNAC	3 cut(s)	368, 489, 698
Hpy188I	TCNGA	3 cut(s)	224, 357, 420
Hpy188III	TCNNGA	6 cut(s)	12, 56, 136, 249, 454, 587
Hpy8I	GTNNAC	3 cut(s)	368, 489, 698
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	1 cut(s)	654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 673
HpyF3I	CTNAG	2 cut(s)	401, 544
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	3 cut(s)	90, 573, 640
KspAI	GTTAAC	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	680, 703
LguI	GCTCTTC	2 cut(s)	441, 674
LmnI	GCTCC	6 cut(s)	173, 185, 227, 239, 251, 425
LpnPI	CCDG	9 cut(s)	9, 168, 405, 477, 484, 516, 540, 572, 658
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	2 cut(s)	12, 113
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	2 cut(s)	682, 705
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	2 cut(s)	680, 703
MboII	GAAGA	6 cut(s)	33, 136, 139, 458, 575, 661
MfeI	CAATTG	1 cut(s)	661
MflI	RGATCY	1 cut(s)	680
MhlI	GDGCHC	3 cut(s)	164, 178, 453
MluCI	AATT	3 cut(s)	61, 120, 661
MlyI	GAGTC	3 cut(s)	287, 317, 560
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	16, 61, 110, 218, 338
MseI	TTAA	2 cut(s)	78, 488
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	471
MunI	CAATTG	1 cut(s)	661
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	2 cut(s)	239, 673
NdeII	GATC	2 cut(s)	680, 703
NlaIII	CATG	3 cut(s)	90, 573, 640
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	309
NspI	RCATGY	2 cut(s)	90, 640
NspV	TTCGAA	1 cut(s)	444
PaeR7I	CTCGAG	1 cut(s)	454
PciI	ACATGT	1 cut(s)	636
PciSI	GCTCTTC	2 cut(s)	441, 674
PfeI	GAWTC	2 cut(s)	15, 434
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	3 cut(s)	286, 316, 560
PpsI	GAGTC	3 cut(s)	286, 316, 560
PscI	ACATGT	1 cut(s)	636
PshAI	GACNNNNGTC	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	680
SacI	GAGCTC	1 cut(s)	453
SapI	GCTCTTC	2 cut(s)	441, 674
SaqAI	TTAA	2 cut(s)	78, 488
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	680, 703
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	3 cut(s)	287, 317, 560
SduI	GDGCHC	3 cut(s)	164, 178, 453
SetI	ASST	8 cut(s)	190, 256, 316, 391, 430, 453, 517, 620
SfaNI	GCATC	1 cut(s)	538
Sfr274I	CTCGAG	1 cut(s)	454
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	454
SmlI	CTYRAG	2 cut(s)	56, 454
SmoI	CTYRAG	2 cut(s)	56, 454
Sse9I	AATT	3 cut(s)	61, 120, 661
SsiI	CCGC	6 cut(s)	105, 131, 230, 233, 376, 407
SspMI	CTAG	2 cut(s)	12, 113
SstI	GAGCTC	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	5 cut(s)	69, 267, 444, 455, 465
TasI	AATT	3 cut(s)	61, 120, 661
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	15, 434
Tru1I	TTAA	2 cut(s)	78, 488
Tru9I	TTAA	2 cut(s)	78, 488
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	1 cut(s)	309
Tsp45I	GTSAC	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	1 cut(s)	61
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	2 cut(s)	90, 640
XhoI	CTCGAG	1 cut(s)	454
XmiI	GTMKAC	2 cut(s)	367, 697
XspI	CTAG	2 cut(s)	12, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.