Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006207

Physical Location & Seq

Genomic Coordinates Forward (+)

26421610 .. 26423240

Gene Structure 1631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66070.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGATGGTTATTATTCTCTGTCTCCCATCTCTGTCCTCCACCGGATTAAAGATTCCTTCCATTTCGCCGTCTCTGCCCTTCTCGCCAACCTCTTCTCCGCTCTCTTCACCTTCTTCTTCGCTTTAGTGGGGACTTTGCTGGGAGCATTGACAGGGGCTTTGATCGGCCAAGAAACAGAGAGCGGTTTCATCAGAGGAGCCGCCGTTGGTGCTATCTCAGGCGCCGTCTTCTCCATCGAAGTCTTTGAATCTTCCCTCCTCCTTTGGCAATCCGATGAGTCTGGAATTGGATGCCTTCTCTACTTGATTGATGTCATTGCTAGCCTTTTGAGCGGGAGGCTTGTTCGTGAGCGTATCGGTCCTGCAATGCTAAGTGCCGTCCAGAGTCAGATGGGAGCTGTGGAGTCCCAGTTCCAAGATCATACAGACATCTTTGACACTGCCATTTCAAAGGGTCTCACTGGGGACTCTCTCAACAGGATCCCTAAGGTCCGAATCACAGACACCTCTCCGGAGATTGTCTCTTGCTCTGTCTGCCTTCAGGACTTTCAGGTGGGAGAGACAGTTAGAAGTTTGCCGCACTGCCATCATATGTTCCACCTACCATGCATCGACAAATGGCTTCGCAGGCATGCTTCTTGTCCCTTGTGCAGAAGACATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gly-zipper_Omp Gly-zipper_OmpA Gly-zipper_YMGG zf-RING_2

Protein Analysis

221

Amino Acids

24.11

Weight (kDa)

6.11

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gly-zipper_YMGG	PF13441	41 - 76	9.2e-08	YMGG-like Gly-zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17730 AT2G17730 AT4G35840 AT4G35840 AT5G66070 AT5G66070 AT5G66070 AT5G66070 AT5G66070
fragaria_vesca	FvH4_1g11120 FvH4_1g11120 FvH4_1g11120
malus_domestica	MD02G1123800.v1.1 MD15G1237800.v1.1
prunus_persica	Prupe.7G174700_v2.0.a1 Prupe.7G174700_v2.0.a1
pyrus_communis	pycom15g21160
rosa_chinensis	RchiOBHm_Chr2g0098401
rosa_laevigata	RLG00000016796
rosa_multiflora	Rmu_ssc0000196.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144010
rosa_rugosa	Rorug02G0072900.1
rosa_samantha	Rh2AG119900 Rh2BG123000 Rh2CG124600 Rh2DG124700
rosa_wichuraiana	Rw2G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccBSI	CCGCTC	3 cut(s)	101, 183, 333
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	5 cut(s)	99, 183, 201, 333, 578
AclWI	GGATC	2 cut(s)	475, 488
AcoI	YGGCCR	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	248, 450
AloI	GAACNNNNNNTCC	2 cut(s)	395, 427
AluBI	AGCT	1 cut(s)	398
AluI	AGCT	1 cut(s)	398
Alw26I	GTCTC	5 cut(s)	27, 76, 461, 526, 554
AlwI	GGATC	2 cut(s)	475, 488
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	1 cut(s)	166
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	359, 490
AsuHPI	GGTGA	1 cut(s)	100
AsuNHI	GCTAGC	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	359, 490
AxyI	CCTNAGG	1 cut(s)	486
BamHI	GGATCC	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	220, 661
BccI	CCATC	4 cut(s)	35, 242, 385, 594
BceAI	ACGGC	4 cut(s)	53, 188, 209, 362
BcoDI	GTCTC	5 cut(s)	27, 76, 461, 526, 554
BfaI	CTAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	2 cut(s)	201, 578
BlsI	GCNGC	2 cut(s)	202, 579
Bme18I	GGWCC	2 cut(s)	359, 490
BmgT120I	GGNCC	2 cut(s)	359, 490
BmiI	GGNNCC	3 cut(s)	199, 223, 482
BmrI	ACTGGG	2 cut(s)	403, 471
BmsI	GCATC	2 cut(s)	281, 618
BmtI	GCTAGC	1 cut(s)	324
BmuI	ACTGGG	2 cut(s)	403, 471
BpiI	GAAGAC	2 cut(s)	220, 661
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	461
BsaWI	WCCGGW	2 cut(s)	42, 511
BsaXI	ACNNNNNCTCC	8 cut(s)	80, 110, 189, 219, 395, 425, 549, 579
Bse1I	ACTGG	2 cut(s)	409, 466
Bse21I	CCTNAGG	1 cut(s)	486
Bse3DI	GCAATG	2 cut(s)	315, 372
BseAI	TCCGGA	1 cut(s)	511
BseGI	GGATG	2 cut(s)	10, 296
BseMI	GCAATG	2 cut(s)	315, 372
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	409, 466
BseRI	GAGGAG	2 cut(s)	210, 248
BseYI	CCCAGC	1 cut(s)	139
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	43, 512
BslFI	GGGAC	4 cut(s)	145, 391, 479, 627
BsmAI	GTCTC	5 cut(s)	27, 76, 461, 526, 554
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	4 cut(s)	145, 391, 479, 627
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	461
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	162, 418, 480
BspACI	CCGC	5 cut(s)	99, 183, 201, 333, 578
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	230
BspEI	TCCGGA	1 cut(s)	511
BspLI	GGNNCC	3 cut(s)	199, 223, 482
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	475, 488
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	461
BsrBI	CCGCTC	3 cut(s)	101, 183, 333
BsrDI	GCAATG	2 cut(s)	315, 372
BsrI	ACTGG	2 cut(s)	409, 466
BssMI	GATC	3 cut(s)	162, 418, 480
BssNI	GRCGYC	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	2 cut(s)	98, 110
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	322, 629, 633
BstDEI	CTNAG	3 cut(s)	217, 371, 486
BstF5I	GGATG	2 cut(s)	10, 296
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	3 cut(s)	165, 421, 483
BstMAI	GTCTC	5 cut(s)	27, 76, 461, 526, 554
BstMBI	GATC	3 cut(s)	162, 418, 480
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 83, 209, 330, 534, 628
BstNSI	RCATGY	1 cut(s)	635
BstV2I	GAAGAC	2 cut(s)	220, 661
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
Bsu36I	CCTNAGG	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	10, 296
BtsI	GCAGTG	2 cut(s)	438, 580
BtsIMutI	CAGTG	3 cut(s)	438, 459, 580
Cac8I	GCNNGC	3 cut(s)	322, 629, 633
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	359, 490
CviAII	CATG	2 cut(s)	606, 632
CviJI	RGCY	7 cut(s)	158, 168, 200, 324, 340, 398, 622
CviKI_1	RGCY	7 cut(s)	158, 168, 200, 324, 340, 398, 622
DdeI	CTNAG	3 cut(s)	217, 371, 486
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	3 cut(s)	164, 420, 482
DpnII	GATC	3 cut(s)	162, 418, 480
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	98, 110
EarI	CTCTTC	2 cut(s)	98, 110
Eco31I	GGTCTC	1 cut(s)	461
Eco47I	GGWCC	2 cut(s)	359, 490
Eco57I	CTGAAG	1 cut(s)	524
Eco81I	CCTNAGG	1 cut(s)	486
EcoT22I	ATGCAT	1 cut(s)	611
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	2 cut(s)	609, 635
FaiI	YATR	5 cut(s)	423, 591, 593, 607, 633
FaqI	GGGAC	4 cut(s)	145, 391, 479, 627
FatI	CATG	2 cut(s)	605, 631
FauI	CCCGC	1 cut(s)	326
FauNDI	CATATG	1 cut(s)	591
Fnu4HI	GCNGC	2 cut(s)	201, 578
FokI	GGATG	2 cut(s)	17, 303
Fsp4HI	GCNGC	2 cut(s)	201, 578
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	2 cut(s)	201, 578
GsaI	CCCAGC	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	2 cut(s)	43, 512
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	609, 635
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HinfI	GANTC	7 cut(s)	53, 248, 278, 385, 404, 467, 495
HpaII	CCGG	2 cut(s)	43, 512
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	4 cut(s)	194, 274, 390, 494
Hpy188III	TCNNGA	5 cut(s)	282, 347, 382, 512, 542
HpyAV	CCTTC	5 cut(s)	67, 89, 121, 305, 548
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4V	TGCA	3 cut(s)	365, 609, 651
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 83, 209, 330, 534, 628
HpyF3I	CTNAG	3 cut(s)	217, 371, 486
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	609, 635
HspAI	GCGC	1 cut(s)	222
KasI	GGCGCC	1 cut(s)	221
Kpn2I	TCCGGA	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	162, 418, 480
LmnI	GCTCC	3 cut(s)	143, 197, 395
LweI	GCATC	2 cut(s)	281, 618
MaeI	CTAG	1 cut(s)	321
MalI	GATC	3 cut(s)	164, 420, 482
MbiI	CCGCTC	3 cut(s)	101, 183, 333
MboI	GATC	3 cut(s)	162, 418, 480
MboII	GAAGA	7 cut(s)	85, 97, 106, 109, 220, 243, 666
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	1 cut(s)	285
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	4 cut(s)	287, 394, 413, 461
MnlI	CCTC	7 cut(s)	47, 101, 188, 266, 269, 330, 517
Mph1103I	ATGCAT	1 cut(s)	611
MroI	TCCGGA	1 cut(s)	511
MseI	TTAA	1 cut(s)	48
MspI	CCGG	2 cut(s)	43, 512
MwoI	GCNNNNNNNGC	6 cut(s)	74, 83, 209, 330, 534, 628
NarI	GGCGCC	1 cut(s)	222
NdeI	CATATG	1 cut(s)	591
NdeII	GATC	3 cut(s)	162, 418, 480
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	609, 635
NlaIV	GGNNCC	3 cut(s)	199, 223, 482
NsiI	ATGCAT	1 cut(s)	611
NspI	RCATGY	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	635
PfeI	GAWTC	3 cut(s)	53, 248, 495
PkrI	GCNGC	2 cut(s)	202, 579
PleI	GAGTC	4 cut(s)	286, 393, 412, 461
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	4 cut(s)	286, 393, 412, 461
PspFI	CCCAGC	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	199, 223, 482
PspPI	GGNCC	2 cut(s)	359, 490
PsuI	RGATCY	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	201, 578
Sau3AI	GATC	3 cut(s)	162, 418, 480
Sau96I	GGNCC	2 cut(s)	359, 490
SchI	GAGTC	4 cut(s)	287, 394, 413, 461
SetI	ASST	7 cut(s)	93, 113, 400, 492, 509, 555, 603
SfaNI	GCATC	2 cut(s)	281, 618
SfoI	GGCGCC	1 cut(s)	223
SinI	GGWCC	2 cut(s)	359, 490
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	5 cut(s)	99, 183, 201, 333, 578
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	565
TaqI	TCGA	2 cut(s)	237, 612
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	1 cut(s)	285
TauI	GCSGC	2 cut(s)	203, 580
TfiI	GAWTC	3 cut(s)	53, 248, 495
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	3 cut(s)	445, 466, 587
TspDTI	ATGAA	1 cut(s)	178
TspRI	CASTG	3 cut(s)	445, 466, 587
VpaK11BI	GGWCC	2 cut(s)	359, 490
XceI	RCATGY	1 cut(s)	635
XspI	CTAG	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.