Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006207

Physical Location & Seq

Genomic Coordinates Forward (+)

6067103 .. 6069616

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATTTTATAGCGCACCCATCTCGTTTCTCTTCGTCTTTTTCCTACTCATTTGGAAATATCTTCGAAAGGGTTAAGGATTTTTGCAACTTTGCGCTTTCTGCGATTATTGGGAACGTTTTCTCTGCGATCTTCACCTTCTTCTTTGCTTTGGTAGGCACCTTGTTAGGAGCTATGACCGGAGCTTTGATTGGCCAAGAGACTGAAAGCGGATTTGTTAGAGGAGCTGCGGTTGGAGCAATCTCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCCCTTATTCTTTGGCAGTCAGATGAATCCGGAATTGGGTGTCTTCTGTACTTGATTGATGTCATTGCAAGCCTACTAAGTGGTAGATTAGTTCGCGAGCGAATTGGTCCAGCCATGTTAAGTGCAGTGCAAAGTCAGATGGGAGCTGTTGAATCAAGCTTTGAAGAGATTCCTAACATCTTTGACACCGGTGGGGCCAAAGGATTGCCTGGAGATTCTGTTGAAAAGATCCCACAGATCATCATTACTAGCAAAAATAATGTGGATGCTTCTGGAGATAAAGTCTCTTGTTCAGTATGCCTTCAGGACTTTCAGCTTGGAGAGACAGTCAGAAGTCTACCACAATGCCATCACATGTTTCACCTGCCATGTATAGATAAGTGGCTCCTGAGGCATGGTTCTTGCCCACTTTGCAGAAGGGATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gly-zipper_Omp Gly-zipper_OmpA Gly-zipper_YMGG zf-RING_2

Protein Analysis

236

Amino Acids

25.37

Weight (kDa)

5.17

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gly-zipper_YMGG	PF13441	50 - 85	2.9e-07	YMGG-like Gly-zipper
zf-RING_2	PF13639	189 - 232	2.8e-13	Ring finger domain
zf-RING_11	PF17123	190 - 218	6.9e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	190 - 231	1.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	204 - 232	7.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17730 AT2G17730 AT4G35840 AT4G35840 AT5G66070 AT5G66070 AT5G66070 AT5G66070 AT5G66070
fragaria_vesca	FvH4_1g11120 FvH4_1g11120 FvH4_1g11120
malus_domestica	MD02G1123800.v1.1 MD15G1237800.v1.1
prunus_persica	Prupe.7G174700_v2.0.a1 Prupe.7G174700_v2.0.a1
pyrus_communis	pycom15g21160
rosa_chinensis	RchiOBHm_Chr2g0098401
rosa_laevigata	RLG00000016796
rosa_multiflora	Rmu_ssc0000196.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144010
rosa_rugosa	Rorug02G0072900.1
rosa_samantha	Rh2AG119900 Rh2BG123000 Rh2CG124600 Rh2DG124700
rosa_wichuraiana	Rw2G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	651
Acc36I	ACCTGC	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	616
AccII	CGCG	1 cut(s)	375
AccIII	TCCGGA	1 cut(s)	308
AciI	CCGC	2 cut(s)	210, 230
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	1 cut(s)	502
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	633
AgeI	ACCGGT	1 cut(s)	467
AgsI	TTSAA	5 cut(s)	266, 275, 431, 443, 503
AjnI	CCWGG	1 cut(s)	487
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	7 cut(s)	173, 185, 227, 251, 425, 438, 595
AluI	AGCT	7 cut(s)	173, 185, 227, 251, 425, 438, 595
Alw26I	GTCTC	3 cut(s)	194, 568, 596
AlwI	GGATC	1 cut(s)	502
AlwNI	CAGNNNCTG	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	308
AoxI	GGCC	2 cut(s)	193, 474
ApeKI	GCWGC	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AsiGI	ACCGGT	1 cut(s)	467
Asp700I	GAANNNNTTC	2 cut(s)	119, 447
AspLEI	GCGC	2 cut(s)	16, 97
AspS9I	GGNCC	2 cut(s)	386, 474
AsuHPI	GGTGA	2 cut(s)	127, 632
AsuII	TTCGAA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	668
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	3 cut(s)	28, 412, 636
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	489
BcoDI	GTCTC	3 cut(s)	194, 568, 596
BfaI	CTAG	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	651
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	386, 474
BmiI	GGNNCC	3 cut(s)	160, 475, 665
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	2 cut(s)	510, 573
Bpu14I	TTCGAA	1 cut(s)	66
BsaWI	WCCGGW	3 cut(s)	179, 308, 467
BsaXI	ACNNNNNCTCC	8 cut(s)	216, 246, 483, 513, 546, 576, 591, 621
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	467
Bse21I	CCTNAGG	1 cut(s)	668
Bse3DI	GCAATG	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	258, 659
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	2 cut(s)	195, 476
BshNI	GGYRCC	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	467
BsiSI	CCGG	3 cut(s)	180, 309, 468
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	3 cut(s)	194, 568, 596
BsnI	GGCC	2 cut(s)	195, 476
Bsp119I	TTCGAA	1 cut(s)	66
Bsp13I	TCCGGA	1 cut(s)	308
Bsp143I	GATC	4 cut(s)	129, 507, 516, 700
Bsp68I	TCGCGA	1 cut(s)	375
BspACI	CCGC	2 cut(s)	210, 230
BspANI	GGCC	2 cut(s)	195, 476
BspCNI	CTCAG	2 cut(s)	257, 660
BspEI	TCCGGA	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	160, 475, 665
BspMI	ACCTGC	1 cut(s)	651
BspPI	GGATC	1 cut(s)	502
BspT104I	TTCGAA	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	467
BssAI	RCCGGY	1 cut(s)	467
BssMI	GATC	4 cut(s)	129, 507, 516, 700
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	2 cut(s)	37, 438
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	349, 377
BstDEI	CTNAG	3 cut(s)	244, 356, 668
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	16, 97
BstKTI	GATC	4 cut(s)	132, 510, 519, 703
BstMAI	GTCTC	3 cut(s)	194, 568, 596
BstMBI	GATC	4 cut(s)	129, 507, 516, 700
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 236, 670, 690
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	487
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	507, 700
BstYI	RGATCY	2 cut(s)	507, 700
Bsu36I	CCTNAGG	1 cut(s)	668
BsuRI	GGCC	2 cut(s)	195, 476
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
BtuMI	TCGCGA	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	651
Cac8I	GCNNGC	2 cut(s)	349, 377
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	2 cut(s)	16, 97
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	386, 474
Csp6I	GTAC	1 cut(s)	328
CspAI	ACCGGT	1 cut(s)	467
CviAII	CATG	4 cut(s)	394, 634, 648, 674
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	244, 356, 668
DpnI	GATC	4 cut(s)	131, 509, 518, 702
DpnII	GATC	4 cut(s)	129, 507, 516, 700
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	37, 438
EarI	CTCTTC	2 cut(s)	37, 438
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	487
FaeI	CATG	4 cut(s)	397, 637, 651, 677
FaiI	YATR	8 cut(s)	11, 176, 395, 577, 635, 649, 653, 675
FatI	CATG	4 cut(s)	393, 633, 647, 673
FblI	GTMKAC	1 cut(s)	616
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	2 cut(s)	15, 96
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	2 cut(s)	510, 573
HaeIII	GGCC	2 cut(s)	195, 476
HapII	CCGG	3 cut(s)	180, 309, 468
HhaI	GCGC	2 cut(s)	16, 97
Hin1II	CATG	4 cut(s)	397, 637, 651, 677
Hin6I	GCGC	2 cut(s)	14, 95
HinP1I	GCGC	2 cut(s)	14, 95
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	5 cut(s)	275, 305, 431, 448, 494
HpaII	CCGG	3 cut(s)	180, 309, 468
HphI	GGTGA	2 cut(s)	127, 632
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	3 cut(s)	301, 417, 611
Hpy188III	TCNNGA	6 cut(s)	246, 309, 374, 552, 584, 667
Hpy8I	GTNNAC	1 cut(s)	617
HpyAV	CCTTC	3 cut(s)	148, 590, 690
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	5 cut(s)	87, 347, 404, 409, 693
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 236, 670, 690
HpyF3I	CTNAG	3 cut(s)	244, 356, 668
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	397, 637, 651, 677
HspAI	GCGC	2 cut(s)	14, 95
Kpn2I	TCCGGA	1 cut(s)	308
Kzo9I	GATC	4 cut(s)	129, 507, 516, 700
LmnI	GCTCC	7 cut(s)	170, 182, 224, 236, 248, 422, 669
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	117
MalI	GATC	4 cut(s)	131, 509, 518, 702
MboI	GATC	4 cut(s)	129, 507, 516, 700
MboII	GAAGA	7 cut(s)	24, 55, 124, 133, 270, 314, 455
MflI	RGATCY	2 cut(s)	507, 700
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	2 cut(s)	312, 381
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	215, 663
Mox20I	TGGCCA	1 cut(s)	195
MroI	TCCGGA	1 cut(s)	308
MroXI	GAANNNNTTC	2 cut(s)	119, 447
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	75, 398
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	3 cut(s)	180, 309, 468
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	101, 236, 670, 690
NdeII	GATC	4 cut(s)	129, 507, 516, 700
NlaIII	CATG	4 cut(s)	397, 637, 651, 677
NlaIV	GGNNCC	3 cut(s)	160, 475, 665
NruI	TCGCGA	1 cut(s)	375
NspI	RCATGY	1 cut(s)	637
NspV	TTCGAA	1 cut(s)	66
PaqCI	CACCTGC	1 cut(s)	651
PciI	ACATGT	1 cut(s)	633
PdmI	GAANNNNTTC	2 cut(s)	119, 447
PfeI	GAWTC	5 cut(s)	275, 305, 431, 448, 494
PinAI	ACCGGT	1 cut(s)	467
PkrI	GCNGC	1 cut(s)	229
PscI	ACATGT	1 cut(s)	633
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	3 cut(s)	160, 475, 665
PspPI	GGNCC	2 cut(s)	386, 474
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	507, 700
RruI	TCGCGA	1 cut(s)	375
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	75, 398
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	4 cut(s)	129, 507, 516, 700
Sau96I	GGNCC	2 cut(s)	386, 474
ScrFI	CCNGG	1 cut(s)	489
SfaNI	GCATC	1 cut(s)	535
SfuI	TTCGAA	1 cut(s)	66
SgrAI	CRCCGGYG	1 cut(s)	467
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	312, 381
SsiI	CCGC	2 cut(s)	210, 230
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	312, 381
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	5 cut(s)	275, 305, 431, 448, 494
Tru1I	TTAA	2 cut(s)	75, 398
Tru9I	TTAA	2 cut(s)	75, 398
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	386
XceI	RCATGY	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	616
XmnI	GAANNNNTTC	2 cut(s)	119, 447
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.