Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006207

Physical Location & Seq

Genomic Coordinates Reverse (-)

17436137 .. 17439232

Gene Structure 3096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G174700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATTTTATTGCACACCCATCTCGGTTTTCTTCATCTTCTTCGTTTTCATTTGGGAATTTCTTTGAGAGGATCAAGGAATTTTGCAACTTTGCGGTCTCTGCGATTCTTGGGAACATTTTCTCTGCGATCTTCACCTTCTTCTTTGCATTAGTGGGCACCATGTTAGGAGCTATGACTGGAGCTTTGATAGGCCAAGAGACTGAGAGTGGATTTGTAAGAGGGGCTGCTGTTGGAGCAATATCAGGAGCTGTTTTCTCTATCGAAGTGTTTGAATCTTCCCTTATTCTTTGGCAATCAGATGAGTCCGGAATTGGGTGTCTTCTTTATTTGATTGATGTCATTGCAAGTCTCCTAAGTGGTAGACTAGTCCGTGAGCGGATCGGTCCAGCCATGTTAAGTGCAGTGCAAAGTCAGATGGGTGCAGTTGAATCAAGCTTTGATGAGATCCCCAATATCTTTGACACTGGTGGGTCCAAAGGGTTGCCTGGAGATTCAGTTGAAAAGATCCCAAAGATCATTATTACTAGCAACAATAATGTGGATGCTTCTGGGGAGAAAGTCTCTTGTTCAGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACAGTTAGAAGTTTGCCCCACTGCCATCACATGTTTCATCTACCTTGTATAGATAAGTGGCTCCTGCGGCATGGTTCATGCCCACTATGCAGAAGGGATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gly-zipper_Omp Gly-zipper_OmpA Gly-zipper_YMGG zf-RING_2

Protein Analysis

236

Amino Acids

25.39

Weight (kDa)

5.32

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17730 AT2G17730 AT4G35840 AT4G35840 AT5G66070 AT5G66070 AT5G66070 AT5G66070 AT5G66070
fragaria_vesca	FvH4_1g11120 FvH4_1g11120 FvH4_1g11120
malus_domestica	MD02G1123800.v1.1 MD15G1237800.v1.1
prunus_persica	Prupe.7G174700_v2.0.a1 Prupe.7G174700_v2.0.a1
pyrus_communis	pycom15g21160
rosa_chinensis	RchiOBHm_Chr2g0098401
rosa_laevigata	RLG00000016796
rosa_multiflora	Rmu_ssc0000196.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144010
rosa_rugosa	Rorug02G0072900.1
rosa_samantha	Rh2AG119900 Rh2BG123000 Rh2CG124600 Rh2DG124700
rosa_wichuraiana	Rw2G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	364
AccIII	TCCGGA	1 cut(s)	308
AciI	CCGC	3 cut(s)	95, 379, 670
AclWI	GGATC	4 cut(s)	80, 389, 442, 502
AcsI	RAATTY	2 cut(s)	58, 80
AcuI	CTGAAG	1 cut(s)	566
AfiI	CCNNNNNNNGG	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	3 cut(s)	275, 431, 503
AhlI	ACTAGT	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	5 cut(s)	173, 185, 251, 438, 595
AluI	AGCT	5 cut(s)	173, 185, 251, 438, 595
Alw26I	GTCTC	5 cut(s)	103, 194, 356, 568, 596
AlwI	GGATC	4 cut(s)	80, 389, 442, 502
AlwNI	CAGNNNCTG	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	308
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	58, 80
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
Asp700I	GAANNNNTTC	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	386, 474
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	2 cut(s)	386, 474
BaeGI	GKGCMC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	3 cut(s)	28, 412, 636
BciT130I	CCWGG	1 cut(s)	489
BcoDI	GTCTC	5 cut(s)	103, 194, 356, 568, 596
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	2 cut(s)	368, 528
BisI	GCNGC	2 cut(s)	228, 671
BlsI	GCNGC	2 cut(s)	229, 672
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	2 cut(s)	386, 474
BmgT120I	GGNCC	2 cut(s)	386, 474
BmiI	GGNNCC	3 cut(s)	160, 475, 665
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	2 cut(s)	201, 510
BsaI	GGTCTC	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	4 cut(s)	483, 513, 591, 621
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	2 cut(s)	184, 472
Bse3DI	GCAATG	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	184, 472
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	2 cut(s)	423, 444
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	5 cut(s)	103, 194, 356, 568, 596
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp13I	TCCGGA	1 cut(s)	308
Bsp143I	GATC	7 cut(s)	72, 129, 381, 447, 507, 516, 700
BspACI	CCGC	3 cut(s)	95, 379, 670
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	196
BspEI	TCCGGA	1 cut(s)	308
BspLI	GGNNCC	3 cut(s)	160, 475, 665
BspPI	GGATC	4 cut(s)	80, 389, 442, 502
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	103
BsrBI	CCGCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	184, 472
BssMI	GATC	7 cut(s)	72, 129, 381, 447, 507, 516, 700
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	607
BstDEI	CTNAG	2 cut(s)	204, 356
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	7 cut(s)	75, 132, 384, 450, 510, 519, 703
BstMAI	GTCTC	5 cut(s)	103, 194, 356, 568, 596
BstMBI	GATC	7 cut(s)	72, 129, 381, 447, 507, 516, 700
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 236, 670, 690
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	3 cut(s)	447, 507, 700
BstYI	RGATCY	3 cut(s)	447, 507, 700
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	2 cut(s)	411, 622
BtsIMutI	CAGTG	3 cut(s)	411, 465, 622
CaiI	CAGNNNCTG	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	386, 474
CviAII	CATG	5 cut(s)	163, 394, 634, 674, 681
CviJI	RGCY	9 cut(s)	173, 185, 195, 227, 251, 392, 438, 595, 664
CviKI_1	RGCY	9 cut(s)	173, 185, 195, 227, 251, 392, 438, 595, 664
DdeI	CTNAG	2 cut(s)	204, 356
DpnI	GATC	7 cut(s)	74, 131, 383, 449, 509, 518, 702
DpnII	GATC	7 cut(s)	72, 129, 381, 447, 507, 516, 700
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	386, 474
Eco57I	CTGAAG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	487
FaeI	CATG	5 cut(s)	166, 397, 637, 677, 684
FaiI	YATR	8 cut(s)	164, 176, 395, 635, 653, 675, 682, 691
FatI	CATG	5 cut(s)	162, 393, 633, 673, 680
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	228, 671
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	2 cut(s)	228, 671
FspBI	CTAG	2 cut(s)	368, 528
GluI	GCNGC	2 cut(s)	228, 671
GsuI	CTGGAG	2 cut(s)	201, 510
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	309
Hin1II	CATG	5 cut(s)	166, 397, 637, 677, 684
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	5 cut(s)	106, 275, 305, 431, 494
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	2 cut(s)	301, 417
Hpy188III	TCNNGA	3 cut(s)	246, 309, 584
Hpy8I	GTNNAC	1 cut(s)	365
HpyAV	CCTTC	3 cut(s)	148, 590, 690
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4V	TGCA	8 cut(s)	14, 87, 149, 347, 404, 409, 425, 693
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 236, 670, 690
HpyF3I	CTNAG	2 cut(s)	204, 356
Hsp92II	CATG	5 cut(s)	166, 397, 637, 677, 684
Kpn2I	TCCGGA	1 cut(s)	308
Kzo9I	GATC	7 cut(s)	72, 129, 381, 447, 507, 516, 700
LmnI	GCTCC	5 cut(s)	170, 182, 236, 248, 669
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	2 cut(s)	368, 528
MalI	GATC	7 cut(s)	74, 131, 383, 449, 509, 518, 702
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	7 cut(s)	72, 129, 381, 447, 507, 516, 700
MboII	GAAGA	7 cut(s)	24, 30, 33, 124, 133, 270, 314
MflI	RGATCY	3 cut(s)	447, 507, 700
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	3 cut(s)	58, 80, 312
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	63, 215
MroI	TCCGGA	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	398
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	4 cut(s)	101, 236, 670, 690
NdeII	GATC	7 cut(s)	72, 129, 381, 447, 507, 516, 700
NlaIII	CATG	5 cut(s)	166, 397, 637, 677, 684
NlaIV	GGNNCC	3 cut(s)	160, 475, 665
NspI	RCATGY	1 cut(s)	637
PciI	ACATGT	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	4 cut(s)	106, 275, 431, 494
PkrI	GCNGC	2 cut(s)	229, 672
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	3 cut(s)	160, 475, 665
PspPI	GGNCC	2 cut(s)	386, 474
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	3 cut(s)	447, 507, 700
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	2 cut(s)	228, 671
Sau3AI	GATC	7 cut(s)	72, 129, 381, 447, 507, 516, 700
Sau96I	GGNCC	2 cut(s)	386, 474
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	7 cut(s)	140, 175, 187, 253, 440, 597, 649
SfaNI	GCATC	1 cut(s)	535
SinI	GGWCC	2 cut(s)	386, 474
SpeI	ACTAGT	1 cut(s)	367
Sse9I	AATT	3 cut(s)	58, 80, 312
SsiI	CCGC	3 cut(s)	95, 379, 670
SspMI	CTAG	2 cut(s)	368, 528
StyD4I	CCNGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	607
TaqI	TCGA	1 cut(s)	264
TaqII	GACCGA	1 cut(s)	374
TasI	AATT	3 cut(s)	58, 80, 312
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	4 cut(s)	106, 275, 431, 494
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	3 cut(s)	411, 472, 629
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	4 cut(s)	24, 39, 629, 669
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	3 cut(s)	411, 472, 629
VpaK11BI	GGWCC	2 cut(s)	386, 474
XapI	RAATTY	2 cut(s)	58, 80
XceI	RCATGY	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	2 cut(s)	368, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.