AT2G17740

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011773
Physical Location & Seq
Reverse (-)
7706896 .. 7707954
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17740.1

Sequence Viewer

Length: 747 bp
ATGGCTTCCCGCCCTTCAGTGAGACACCCGAGCCACAACCATCCATTACGCGGTCACAAAGCCCAAGTTGAAGATGAGATCATCTGCTCTGGTTGCGACCTAGACCTACTCGGTGCATATTTCAAGTGCACAAAGTCAGAGTGTGATTACTTCTTGCACAAGTCATGTTTCGATCTCCCACGTGAGATCCGTCACAAGTCTCACCCTGATCACCCTTTGATCCTCCTCTATTCCCCACAGAATAATAATTCAACGTATACTTGTGACGCATGCGGTGAGTATGGATCGGGGTTCACTTACAATTGTTCTATCTGCCAGTACGATGTTCATGTTGGATGTGTGTCTGTGCCTGAGACCATGAAGCATGATGAGCACGTTCACCCGCTCGCTTTGATCTACAAGGCTCCATGCCCAAAGGATCATATATTTACCTGCGATGTTTGCGATGAAACTATGCCGCATAATCTGTGGTTGTACTACTGCCAGAAATGTGACTACGGTGCTCATTTACATTCATGCGTTGCTGAAGAAGAGGAAAAGTCAAAGAAAGGAGGAAGAGGAAGAGGAGGAGAAGGAGGAAGTGGTGGAAATGGAGTGAACAGAGGAAGGAGCTCCGCGAATTCAGAGCTAGCTGCAATGTTAAAGGCACAAAGAGAGATGGAGCAGATGCAAATTGCTCTTCACTTGGAGATGCAAAGAGCTAAGATTGATAAGAAATCAAGAAAGCATATGCTTAAAATGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

248

Amino Acids

27.95

Weight (kDa)

6.99

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 10 - 56 1.4e-06 C1 domain
C1_2 PF03107 66 - 114 4.9e-12 C1 domain
C1_2 PF03107 125 - 170 2.7e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17740 AT2G28270 AT2G44370 AT2G44380 AT2G44390 AT5G40590 AT5G43520
fragaria_vesca FvH4_7g00120
malus_domestica MD07G1002100.v1.1
prunus_persica Prupe.2G003600_v2.0.a1
pyrus_communis pycom02g26720
rosa_chinensis RchiOBHm_Chr1g0313371
rosa_multiflora Rmu_sc0000035.1_g000026
rosa_roxburghii Rroxscaffold_4G00332240
rosa_samantha Rh1AG003000 Rh1BG000100 Rh1CG001500 Rh1DG003000
rosa_wichuraiana Rw1G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 440
AccBSI CCGCTC 1 cut(s) 385
AccI GTMKAC 1 cut(s) 257
AccII CGCG 2 cut(s) 51, 617
AciI CCGC 6 cut(s) 10, 51, 273, 383, 458, 615
AclWI GGATC 4 cut(s) 181, 214, 292, 426
AcsI RAATTY 1 cut(s) 619
AcuI CTGAAG 1 cut(s) 546
AcvI CACGTG 1 cut(s) 182
AfaI GTAC 2 cut(s) 320, 476
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 3 cut(s) 71, 124, 252
AluBI AGCT 4 cut(s) 612, 628, 632, 701
AluI AGCT 4 cut(s) 612, 628, 632, 701
Alw21I GWGCWC 4 cut(s) 131, 375, 505, 614
Alw26I GTCTC 3 cut(s) 16, 204, 347
Alw44I GTGCAC 1 cut(s) 127
AlwI GGATC 4 cut(s) 181, 214, 292, 426
Ama87I CYCGRG 1 cut(s) 28
ApaLI GTGCAC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 632
ApoI RAATTY 1 cut(s) 619
AsuHPI GGTGA 4 cut(s) 194, 203, 287, 371
AsuNHI GCTAGC 1 cut(s) 628
AvaI CYCGRG 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 614
BbrPI CACGTG 1 cut(s) 182
Bbv12I GWGCWC 4 cut(s) 131, 375, 505, 614
BbvI GCAGC 1 cut(s) 619
BccI CCATC 2 cut(s) 48, 652
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 3 cut(s) 16, 204, 347
BfaI CTAG 2 cut(s) 101, 629
BfuAI ACCTGC 1 cut(s) 440
BisI GCNGC 2 cut(s) 458, 633
BlsI GCNGC 2 cut(s) 459, 634
BmeT110I CYCGRG 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 405
BmsI GCATC 2 cut(s) 657, 681
BmtI GCTAGC 1 cut(s) 632
BsaAI YACGTR 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 642
BseGI GGATG 2 cut(s) 40, 341
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 3 cut(s) 215, 579, 582
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 1 cut(s) 619
Bsh1236I CGCG 2 cut(s) 51, 617
BsiHKAI GWGCWC 4 cut(s) 131, 375, 505, 614
BsiHKCI CYCGRG 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 3 cut(s) 16, 204, 347
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 4 cut(s) 131, 375, 505, 614
Bsp143I GATC 9 cut(s) 78, 172, 186, 208, 219, 284, 393, 418, 741
BspACI CCGC 6 cut(s) 10, 51, 273, 383, 458, 615
BspCNI CTCAG 1 cut(s) 343
BspFNI CGCG 2 cut(s) 51, 617
BspLI GGNNCC 1 cut(s) 405
BspMI ACCTGC 1 cut(s) 440
BspOI GCTAGC 1 cut(s) 632
BspPI GGATC 4 cut(s) 181, 214, 292, 426
BspQI GCTCTTC 1 cut(s) 684
BspTNI GGTCTC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 1 cut(s) 316
BssMI GATC 9 cut(s) 78, 172, 186, 208, 219, 284, 393, 418, 741
BssNAI GTATAC 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 500
Bst6I CTCTTC 4 cut(s) 525, 550, 556, 684
BstBAI YACGTR 1 cut(s) 182
BstC8I GCNNGC 3 cut(s) 271, 387, 630
BstDEI CTNAG 2 cut(s) 351, 702
BstF5I GGATG 2 cut(s) 40, 341
BstFNI CGCG 2 cut(s) 51, 617
BstKTI GATC 9 cut(s) 81, 175, 189, 211, 222, 287, 396, 421, 744
BstMAI GTCTC 3 cut(s) 16, 204, 347
BstMBI GATC 9 cut(s) 78, 172, 186, 208, 219, 284, 393, 418, 741
BstMWI GCNNNNNNNGC 3 cut(s) 93, 370, 441
BstNSI RCATGY 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 2 cut(s) 51, 617
BstV1I GCAGC 1 cut(s) 619
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 258
BtgZI GCGATG 2 cut(s) 450, 459
BtsCI GGATG 2 cut(s) 40, 341
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 3 cut(s) 271, 387, 630
CseI GACGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 319, 475
CviAII CATG 7 cut(s) 165, 270, 329, 358, 365, 408, 516
CviJI RGCY 8 cut(s) 5, 33, 62, 404, 612, 628, 632, 701
CviKI_1 RGCY 8 cut(s) 5, 33, 62, 404, 612, 628, 632, 701
CviQI GTAC 2 cut(s) 319, 475
DdeI CTNAG 2 cut(s) 351, 702
DpnI GATC 9 cut(s) 80, 174, 188, 210, 221, 286, 395, 420, 743
DpnII GATC 9 cut(s) 78, 172, 186, 208, 219, 284, 393, 418, 741
Eam1104I CTCTTC 4 cut(s) 525, 550, 556, 684
EarI CTCTTC 4 cut(s) 525, 550, 556, 684
Ecl136II GAGCTC 1 cut(s) 612
Eco24I GRGCYC 1 cut(s) 614
Eco31I GGTCTC 1 cut(s) 347
Eco53kI GAGCTC 1 cut(s) 612
Eco57I CTGAAG 1 cut(s) 546
Eco72I CACGTG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 614
FaeI CATG 7 cut(s) 168, 273, 332, 361, 368, 411, 519
FatI CATG 7 cut(s) 164, 269, 328, 357, 364, 407, 515
FauI CCCGC 2 cut(s) 17, 390
FauNDI CATATG 1 cut(s) 729
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 458, 633
FokI GGATG 2 cut(s) 27, 348
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 2 cut(s) 458, 633
FspBI CTAG 2 cut(s) 101, 629
GluI GCNGC 2 cut(s) 458, 633
HgaI GACGC 1 cut(s) 275
Hin1II CATG 7 cut(s) 168, 273, 332, 361, 368, 411, 519
HphI GGTGA 4 cut(s) 194, 203, 287, 371
Hpy166II GTNNAC 5 cut(s) 129, 258, 294, 379, 598
Hpy188I TCNGA 2 cut(s) 139, 625
Hpy188III TCNNGA 1 cut(s) 720
Hpy8I GTNNAC 5 cut(s) 129, 258, 294, 379, 598
HpyAV CCTTC 3 cut(s) 24, 566, 600
HpyCH4III ACNGT 1 cut(s) 500
HpyCH4IV ACGT 3 cut(s) 181, 254, 375
HpyCH4V TGCA 6 cut(s) 116, 129, 157, 635, 670, 694
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 370, 441
HpyF3I CTNAG 2 cut(s) 351, 702
HpySE526I ACGT 3 cut(s) 181, 254, 375
Hsp92II CATG 7 cut(s) 168, 273, 332, 361, 368, 411, 519
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 9 cut(s) 78, 172, 186, 208, 219, 284, 393, 418, 741
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 4 cut(s) 409, 609, 617, 661
LpnPI CCDG 6 cut(s) 75, 219, 329, 363, 445, 497
Lsp1109I GCAGC 1 cut(s) 619
LweI GCATC 2 cut(s) 657, 681
MaeI CTAG 2 cut(s) 101, 629
MaeII ACGT 3 cut(s) 181, 254, 375
MaeIII GTNAC 4 cut(s) 53, 191, 263, 491
MalI GATC 9 cut(s) 80, 174, 188, 210, 221, 286, 395, 420, 743
MbiI CCGCTC 1 cut(s) 385
MboI GATC 9 cut(s) 78, 172, 186, 208, 219, 284, 393, 418, 741
MboII GAAGA 6 cut(s) 83, 539, 542, 567, 573, 671
MfeI CAATTG 1 cut(s) 301
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 4 cut(s) 131, 375, 505, 614
MluCI AATT 4 cut(s) 247, 301, 619, 672
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 9 cut(s) 233, 236, 526, 545, 551, 557, 560, 569, 596
MseI TTAA 2 cut(s) 641, 735
MunI CAATTG 1 cut(s) 301
MvnI CGCG 2 cut(s) 51, 617
MwoI GCNNNNNNNGC 3 cut(s) 93, 370, 441
NdeI CATATG 1 cut(s) 729
NdeII GATC 9 cut(s) 78, 172, 186, 208, 219, 284, 393, 418, 741
NheI GCTAGC 1 cut(s) 628
NlaIII CATG 7 cut(s) 168, 273, 332, 361, 368, 411, 519
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 4 cut(s) 53, 191, 263, 491
NspI RCATGY 1 cut(s) 273
PaeI GCATGC 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PkrI GCNGC 2 cut(s) 459, 634
PmaCI CACGTG 1 cut(s) 182
PmlI CACGTG 1 cut(s) 182
Ppu21I YACGTR 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 614
PspCI CACGTG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 405
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 2 cut(s) 320, 476
RsaNI GTAC 2 cut(s) 319, 475
SacI GAGCTC 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 2 cut(s) 641, 735
SatI GCNGC 2 cut(s) 458, 633
Sau3AI GATC 9 cut(s) 78, 172, 186, 208, 219, 284, 393, 418, 741
SduI GDGCHC 4 cut(s) 131, 375, 505, 614
SfaNI GCATC 2 cut(s) 657, 681
SphI GCATGC 1 cut(s) 273
Sse9I AATT 4 cut(s) 247, 301, 619, 672
SsiI CCGC 6 cut(s) 10, 51, 273, 383, 458, 615
SspMI CTAG 2 cut(s) 101, 629
SstI GAGCTC 1 cut(s) 614
TaaI ACNGT 1 cut(s) 500
TaiI ACGT 3 cut(s) 184, 257, 378
TaqI TCGA 1 cut(s) 171
TasI AATT 4 cut(s) 247, 301, 619, 672
TatI WGTACW 1 cut(s) 474
TauI GCSGC 1 cut(s) 460
Tru1I TTAA 2 cut(s) 641, 735
Tru9I TTAA 2 cut(s) 641, 735
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 4 cut(s) 53, 191, 263, 491
TseI GCWGC 1 cut(s) 632
Tsp45I GTSAC 4 cut(s) 53, 191, 263, 491
TspDTI ATGAA 4 cut(s) 317, 374, 462, 504
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 24
VneI GTGCAC 1 cut(s) 127
XapI RAATTY 1 cut(s) 619
XceI RCATGY 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 2 cut(s) 101, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.