pycom02g26720

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011773
Physical Location & Seq
Forward (+)
24525361 .. 24525978
618 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g26720.1

Sequence Viewer

Length: 618 bp
ATGCAATGGCAAATGGCGATGGTGAAGCATTTCAGCCACCGCCATGAGTTGTGCTCATTTCAGGTGCAAGAAGAAGATGATGAAATTATCATCTGCTCGGGATGTGACCTGGAGCTGATGATGAATTCAGGTACTTCAGCTTACAAATGCAGCAAGTCCAAGTGCCAATTTTACCTCCACGACTTGTGCTTCGAGCTCCCCCGACAAATAAAACACAAGTCTCACCCCCAACACCCTCTCACTCTCATCTCCAGCCCTCCCTACGAATACGGCGAGTTCAAATGCGATGCCAGTTTTGAGTACGGCTCTAATTGTTTCGCCTTCCACTGCGTCCACTGCAAATACGATCTCCCTCTCCAGTGCGCTGCGTTGCCTGAAACTCTTGGTCATCCGCATCATCATGAGCACACCCTCACTCTCCGATATTCTTCATTGCCCCCAAATCACGATCAAGGCAAACGAATAATGTGCGATCTCTGCGGAGGGTCTTCCCCAGAGGGCTGCTGGGTTTACTGCTGCAAAGATTGCGGCTATACCAGTGATCTCCAGTGTTCCATTAATGCTGAAGCTGATGATCAAGATTACCACCAACATGACGATCATTCAATCTCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

206

Amino Acids

23.49

Weight (kDa)

5.59

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17740 AT2G28270 AT2G44370 AT2G44380 AT2G44390 AT5G40590 AT5G43520
fragaria_vesca FvH4_7g00120
malus_domestica MD07G1002100.v1.1
prunus_persica Prupe.2G003600_v2.0.a1
pyrus_communis pycom02g26720
rosa_chinensis RchiOBHm_Chr1g0313371
rosa_multiflora Rmu_sc0000035.1_g000026
rosa_roxburghii Rroxscaffold_4G00332240
rosa_samantha Rh1AG003000 Rh1BG000100 Rh1CG001500 Rh1DG003000
rosa_wichuraiana Rw1G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 40, 392, 480, 528
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 2 cut(s) 120, 585
AfaI GTAC 2 cut(s) 133, 302
AgsI TTSAA 2 cut(s) 280, 606
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 4 cut(s) 115, 140, 196, 569
AluI AGCT 4 cut(s) 115, 140, 196, 569
Alw21I GWGCWC 3 cut(s) 56, 198, 408
Alw26I GTCTC 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 97
ApeKI GCWGC 4 cut(s) 150, 365, 501, 516
ApoI RAATTY 1 cut(s) 124
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AseI ATTAAT 1 cut(s) 558
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 34, 215
AvaI CYCGRG 1 cut(s) 97
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 480
Bbv12I GWGCWC 3 cut(s) 56, 198, 408
BbvI GCAGC 4 cut(s) 162, 352, 488, 503
BccI CCATC 1 cut(s) 13
BceAI ACGGC 2 cut(s) 286, 319
BcgI CGANNNNNNTGC 2 cut(s) 450, 484
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 225
BisI GCNGC 5 cut(s) 151, 366, 502, 517, 529
BlsI GCNGC 5 cut(s) 152, 367, 503, 518, 530
Bme1390I CCNGG 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 277, 403
BpiI GAAGAC 1 cut(s) 480
BplI GAGNNNNNCTC 4 cut(s) 38, 70, 290, 322
BpmI CTGGAG 4 cut(s) 131, 235, 341, 530
Bse1I ACTGG 4 cut(s) 291, 358, 537, 547
Bse3DI GCAATG 2 cut(s) 11, 431
BseBI CCWGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 107, 388
BseMI GCAATG 2 cut(s) 11, 431
BseNI ACTGG 4 cut(s) 291, 358, 537, 547
BseXI GCAGC 4 cut(s) 162, 352, 488, 503
BseYI CCCAGC 1 cut(s) 504
BsiHKAI GWGCWC 3 cut(s) 56, 198, 408
BsiHKCI CYCGRG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 225
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 3 cut(s) 56, 198, 408
Bsp143I GATC 6 cut(s) 346, 448, 472, 541, 574, 598
BspACI CCGC 4 cut(s) 40, 392, 480, 528
BspHI TCATGA 1 cut(s) 400
BsrDI GCAATG 2 cut(s) 11, 431
BsrI ACTGG 4 cut(s) 291, 358, 537, 547
BssMI GATC 6 cut(s) 346, 448, 472, 541, 574, 598
Bst2UI CCWGG 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 525
BstF5I GGATG 2 cut(s) 107, 388
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 6 cut(s) 349, 451, 475, 544, 577, 601
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 6 cut(s) 346, 448, 472, 541, 574, 598
BstMWI GCNNNNNNNGC 3 cut(s) 336, 477, 525
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 4 cut(s) 162, 352, 488, 503
BstV2I GAAGAC 1 cut(s) 480
BtgZI GCGATG 2 cut(s) 32, 300
BtsCI GGATG 2 cut(s) 107, 388
BtsI GCAGTG 2 cut(s) 325, 334
BtsIMutI CAGTG 5 cut(s) 325, 334, 365, 544, 554
CciI TCATGA 1 cut(s) 400
CfoI GCGC 1 cut(s) 365
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 132, 301
CviAII CATG 3 cut(s) 44, 401, 593
CviJI RGCY 9 cut(s) 36, 115, 140, 196, 255, 306, 501, 531, 569
CviKI_1 RGCY 9 cut(s) 36, 115, 140, 196, 255, 306, 501, 531, 569
CviQI GTAC 2 cut(s) 132, 301
DpnI GATC 6 cut(s) 348, 450, 474, 543, 576, 600
DpnII GATC 6 cut(s) 346, 448, 472, 541, 574, 598
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 2 cut(s) 120, 585
Eco88I CYCGRG 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 3 cut(s) 47, 404, 596
FaiI YATR 4 cut(s) 45, 402, 534, 594
FatI CATG 3 cut(s) 43, 400, 592
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 5 cut(s) 151, 366, 502, 517, 529
FokI GGATG 2 cut(s) 114, 375
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 5 cut(s) 151, 366, 502, 517, 529
GlaI GCGC 1 cut(s) 364
GluI GCNGC 5 cut(s) 151, 366, 502, 517, 529
GsaI CCCAGC 1 cut(s) 508
GsuI CTGGAG 4 cut(s) 131, 235, 341, 530
HgaI GACGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 365
Hin1II CATG 3 cut(s) 47, 404, 596
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HphI GGTGA 2 cut(s) 34, 215
Hpy166II GTNNAC 2 cut(s) 334, 511
Hpy188I TCNGA 1 cut(s) 422
Hpy188III TCNNGA 5 cut(s) 99, 401, 446, 578, 615
Hpy8I GTNNAC 2 cut(s) 334, 511
HpyAV CCTTC 1 cut(s) 331
HpyCH4V TGCA 5 cut(s) 4, 67, 150, 339, 519
HpyF10VI GCNNNNNNNGC 3 cut(s) 336, 477, 525
Hsp92II CATG 3 cut(s) 47, 404, 596
HspAI GCGC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 6 cut(s) 346, 448, 472, 541, 574, 598
LmnI GCTCC 2 cut(s) 112, 201
Lsp1109I GCAGC 4 cut(s) 162, 352, 488, 503
LweI GCATC 2 cut(s) 277, 403
MaeIII GTNAC 1 cut(s) 104
MalI GATC 6 cut(s) 348, 450, 474, 543, 576, 600
MboI GATC 6 cut(s) 346, 448, 472, 541, 574, 598
MboII GAAGA 4 cut(s) 83, 86, 420, 480
MhlI GDGCHC 3 cut(s) 56, 198, 408
MluCI AATT 4 cut(s) 84, 124, 167, 310
MnlI CCTC 7 cut(s) 185, 246, 267, 363, 422, 476, 490
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 558
MslI CAYNNNNRTG 3 cut(s) 42, 399, 591
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 336, 477, 525
NdeII GATC 6 cut(s) 346, 448, 472, 541, 574, 598
NlaIII CATG 3 cut(s) 47, 404, 596
NmuCI GTSAC 1 cut(s) 104
PagI TCATGA 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 29
PkrI GCNGC 5 cut(s) 152, 367, 503, 518, 530
PshBI ATTAAT 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 1 cut(s) 108
RsaI GTAC 2 cut(s) 133, 302
RsaNI GTAC 2 cut(s) 132, 301
RseI CAYNNNNRTG 3 cut(s) 42, 399, 591
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 5 cut(s) 151, 366, 502, 517, 529
Sau3AI GATC 6 cut(s) 346, 448, 472, 541, 574, 598
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 3 cut(s) 56, 198, 408
SetI ASST 8 cut(s) 66, 111, 117, 133, 142, 177, 198, 571
SfaNI GCATC 2 cut(s) 277, 403
SmiMI CAYNNNNRTG 3 cut(s) 42, 399, 591
Sse9I AATT 4 cut(s) 84, 124, 167, 310
SsiI CCGC 4 cut(s) 40, 392, 480, 528
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 108
TaqI TCGA 1 cut(s) 192
TasI AATT 4 cut(s) 84, 124, 167, 310
TauI GCSGC 1 cut(s) 531
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 5 cut(s) 332, 341, 365, 544, 554
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 4 cut(s) 150, 365, 501, 516
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 96, 137, 420
TspRI CASTG 5 cut(s) 332, 341, 365, 544, 554
VspI ATTAAT 1 cut(s) 558
XapI RAATTY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.