AT2G44370

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011773
Physical Location & Seq
Reverse (-)
18321951 .. 18323121
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44370.1

Sequence Viewer

Length: 753 bp
ATGGCCGCAAGAAAACCGTCGGTGAGGCATCCGAGCCACAACCATCCATTGCGCAGTCACAAGGCCCAAGTTGAAGAAGAGATCATTTGCTCTGGTTGCGACCTCGACCTGATAGGTGCAGCTTTCAAATGCACAAAGTCAGAATGCGATTACTTCTTGCACAAGTCATGTTTTGAGCTTCCACGTGAGACTCGTCACAAGGCTCACCCGGATCACCCTTTGATACTGCTGTATTCCCCACCTTACGAGTCAACTTACACGTGTGATGCGTGCGGTGAGTATGGATCCGGATTCACTTACAACTGCTCTATCTGCCAGTACGATGTTCATGTTGGATGTGTGTCCATGCCTGAGTCCGTGGAGCGTGAAGGACACGCACATCCACTCACATTGCTCTACCGTTCTCCTTACCAGAACGGTTTGATCTTTAACTGTGATGTTTGCCAAGAGACTGTTCCAGATAATCTCTGGTCGTATTATTGCAAGGAATGTGATTATGGCACGCATTTACATTCTTGCGCGGTAGAGGAAGAAGAAGCAGAAGAAGAAGAGCCAAAAAGAGGAGGAGGAAGTGCAAGAGGAAACACAAAGAGTGGTGGGAATAAAGGAGGAAGGGGCTCAGCGGCATCGGAGTTAGCTGCAATGTTGGAAGCTCAAAGAGAGATGGAGAAGATGCAGATAGAGTTACATATGGAGATGCAAAGAGCTAAGATTGCTAAGAAAGCGAGAAAGGCTTGTCTCAAGTTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

250

Amino Acids

28.02

Weight (kDa)

6.06

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 11 - 57 6.5e-07 C1 domain
C1_2 PF03107 68 - 114 3.4e-12 C1 domain
C1_2 PF03107 124 - 174 1.7e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17740 AT2G28270 AT2G44370 AT2G44380 AT2G44390 AT5G40590 AT5G43520
fragaria_vesca FvH4_7g00120
malus_domestica MD07G1002100.v1.1
prunus_persica Prupe.2G003600_v2.0.a1
pyrus_communis pycom02g26720
rosa_chinensis RchiOBHm_Chr1g0313371
rosa_multiflora Rmu_sc0000035.1_g000026
rosa_roxburghii Rroxscaffold_4G00332240
rosa_samantha Rh1AG003000 Rh1BG000100 Rh1CG001500 Rh1DG003000
rosa_wichuraiana Rw1G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 53
AccII CGCG 1 cut(s) 521
AccIII TCCGGA 1 cut(s) 287
AciI CCGC 4 cut(s) 6, 273, 521, 623
AclWI GGATC 3 cut(s) 219, 279, 292
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 2 cut(s) 185, 261
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 560
AflIII ACRYGT 2 cut(s) 258, 260
AgsI TTSAA 2 cut(s) 74, 127
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 5 cut(s) 122, 178, 638, 653, 707
AluI AGCT 5 cut(s) 122, 178, 638, 653, 707
Alw26I GTCTC 3 cut(s) 182, 443, 743
AlwI GGATC 3 cut(s) 219, 279, 292
Aor13HI TCCGGA 1 cut(s) 287
AoxI GGCC 2 cut(s) 3, 63
ApeKI GCWGC 2 cut(s) 119, 638
AspLEI GCGC 2 cut(s) 54, 521
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 4 cut(s) 34, 197, 206, 287
BaeI ACNNNNGTAYC 2 cut(s) 215, 248
BamHI GGATCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 620
BbrPI CACGTG 2 cut(s) 185, 261
BbvI GCAGC 2 cut(s) 131, 625
BccI CCATC 2 cut(s) 51, 658
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 3 cut(s) 182, 443, 743
BisI GCNGC 4 cut(s) 6, 120, 624, 639
BlpI GCTNAGC 1 cut(s) 619
BlsI GCNGC 4 cut(s) 7, 121, 625, 640
Bme1390I CCNGG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 5 cut(s) 37, 256, 635, 663, 687
Bpu1102I GCTNAGC 1 cut(s) 619
BpuEI CTTGAG 1 cut(s) 725
BpuMI CCSGG 1 cut(s) 209
BsaAI YACGTR 2 cut(s) 185, 261
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 560
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 3 cut(s) 47, 389, 648
BseAI TCCGGA 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 4 cut(s) 28, 43, 341, 379
BseLI CCNNNNNNNGG 1 cut(s) 560
BseMI GCAATG 3 cut(s) 47, 389, 648
BseMII CTCAG 2 cut(s) 342, 633
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 2 cut(s) 576, 579
BseXI GCAGC 2 cut(s) 131, 625
BsgI GTGCAG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 521
BshFI GGCC 2 cut(s) 5, 65
BsiSI CCGG 2 cut(s) 209, 288
BslI CCNNNNNNNGG 1 cut(s) 560
BsmAI GTCTC 3 cut(s) 182, 443, 743
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 2 cut(s) 5, 65
Bsp1286I GDGCHC 1 cut(s) 620
Bsp13I TCCGGA 1 cut(s) 287
Bsp143I GATC 5 cut(s) 81, 211, 284, 423, 747
Bsp1720I GCTNAGC 1 cut(s) 619
BspACI CCGC 4 cut(s) 6, 273, 521, 623
BspANI GGCC 2 cut(s) 5, 65
BspCNI CTCAG 2 cut(s) 343, 632
BspEI TCCGGA 1 cut(s) 287
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 3 cut(s) 219, 279, 292
BspQI GCTCTTC 1 cut(s) 543
BsrDI GCAATG 3 cut(s) 47, 389, 648
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 5 cut(s) 81, 211, 284, 423, 747
Bst4CI ACNGT 5 cut(s) 18, 401, 419, 434, 454
Bst6I CTCTTC 2 cut(s) 72, 543
BstBAI YACGTR 2 cut(s) 185, 261
BstC8I GCNNGC 2 cut(s) 271, 503
BstDEI CTNAG 4 cut(s) 351, 619, 708, 717
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 4 cut(s) 28, 43, 341, 379
BstFNI CGCG 1 cut(s) 521
BstHHI GCGC 2 cut(s) 54, 521
BstKTI GATC 5 cut(s) 84, 214, 287, 426, 750
BstMAI GTCTC 3 cut(s) 182, 443, 743
BstMBI GATC 5 cut(s) 81, 211, 284, 423, 747
BstMWI GCNNNNNNNGC 5 cut(s) 96, 312, 713, 722, 731
BstSCI CCNGG 1 cut(s) 207
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 131, 625
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 2 cut(s) 5, 65
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 4 cut(s) 28, 43, 341, 379
Cac8I GCNNGC 2 cut(s) 271, 503
CfoI GCGC 2 cut(s) 54, 521
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 319
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 3 cut(s) 168, 329, 346
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 4 cut(s) 351, 619, 708, 717
DpnI GATC 5 cut(s) 83, 213, 286, 425, 749
DpnII GATC 5 cut(s) 81, 211, 284, 423, 747
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 72, 543
EarI CTCTTC 2 cut(s) 72, 543
Eco24I GRGCYC 1 cut(s) 620
Eco72I CACGTG 2 cut(s) 185, 261
EcoT38I GRGCYC 1 cut(s) 620
FaeI CATG 3 cut(s) 171, 332, 349
FaiI YATR 7 cut(s) 169, 282, 330, 347, 498, 690, 692
FatI CATG 3 cut(s) 167, 328, 345
FauNDI CATATG 1 cut(s) 690
Fnu4HI GCNGC 4 cut(s) 6, 120, 624, 639
FokI GGATG 4 cut(s) 15, 30, 348, 366
FriOI GRGCYC 1 cut(s) 620
Fsp4HI GCNGC 4 cut(s) 6, 120, 624, 639
FspI TGCGCA 1 cut(s) 53
GlaI GCGC 2 cut(s) 53, 520
GluI GCNGC 4 cut(s) 6, 120, 624, 639
HaeIII GGCC 2 cut(s) 5, 65
HapII CCGG 2 cut(s) 209, 288
HhaI GCGC 2 cut(s) 54, 521
Hin1II CATG 3 cut(s) 171, 332, 349
Hin6I GCGC 2 cut(s) 52, 519
HinP1I GCGC 2 cut(s) 52, 519
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 4 cut(s) 190, 248, 291, 353
HpaII CCGG 2 cut(s) 209, 288
HphI GGTGA 4 cut(s) 34, 197, 206, 287
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 3 cut(s) 33, 142, 631
Hpy188III TCNNGA 2 cut(s) 288, 458
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 362, 606
HpyCH4III ACNGT 5 cut(s) 18, 401, 419, 434, 454
HpyCH4IV ACGT 2 cut(s) 184, 260
HpyCH4V TGCA 8 cut(s) 119, 132, 160, 483, 575, 641, 676, 700
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 312, 713, 722, 731
HpyF3I CTNAG 4 cut(s) 351, 619, 708, 717
HpySE526I ACGT 2 cut(s) 184, 260
Hsp92II CATG 3 cut(s) 171, 332, 349
HspAI GCGC 2 cut(s) 52, 519
Kpn2I TCCGGA 1 cut(s) 287
Kzo9I GATC 5 cut(s) 81, 211, 284, 423, 747
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 9 cut(s) 78, 122, 222, 301, 329, 363, 425, 454, 471
Lsp1109I GCAGC 2 cut(s) 131, 625
LweI GCATC 5 cut(s) 37, 256, 635, 663, 687
MaeII ACGT 2 cut(s) 184, 260
MaeIII GTNAC 3 cut(s) 56, 194, 684
MalI GATC 5 cut(s) 83, 213, 286, 425, 749
MboI GATC 5 cut(s) 81, 211, 284, 423, 747
MboII GAAGA 8 cut(s) 86, 89, 542, 545, 554, 557, 560, 682
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 620
MlyI GAGTC 3 cut(s) 184, 257, 362
MmeI TCCRAC 2 cut(s) 313, 627
MnlI CCTC 8 cut(s) 18, 113, 520, 554, 557, 560, 572, 602
MroI TCCGGA 1 cut(s) 287
MseI TTAA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 2 cut(s) 209, 288
MspR9I CCNGG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 149
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 5 cut(s) 96, 312, 713, 722, 731
NciI CCSGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 690
NdeII GATC 5 cut(s) 81, 211, 284, 423, 747
NlaIII CATG 3 cut(s) 171, 332, 349
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 56, 194
NsbI TGCGCA 1 cut(s) 53
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 2 cut(s) 190, 266
PctI GAATGC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 4 cut(s) 7, 121, 625, 640
PleI GAGTC 3 cut(s) 184, 256, 361
PmaCI CACGTG 2 cut(s) 185, 261
PmlI CACGTG 2 cut(s) 185, 261
PpsI GAGTC 3 cut(s) 184, 256, 361
Ppu21I YACGTR 2 cut(s) 185, 261
PspCI CACGTG 2 cut(s) 185, 261
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 64
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 4 cut(s) 6, 120, 624, 639
Sau3AI GATC 5 cut(s) 81, 211, 284, 423, 747
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 3 cut(s) 184, 257, 362
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 5 cut(s) 37, 256, 635, 663, 687
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
SsiI CCGC 4 cut(s) 6, 273, 521, 623
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 5 cut(s) 18, 401, 419, 434, 454
TaiI ACGT 2 cut(s) 187, 263
TaqI TCGA 1 cut(s) 105
TauI GCSGC 2 cut(s) 8, 626
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 2 cut(s) 56, 194
TseI GCWGC 2 cut(s) 119, 638
Tsp45I GTSAC 2 cut(s) 56, 194
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.