AT5G40590

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011773
Physical Location & Seq
Reverse (-)
16251318 .. 16252434
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40590.1

Sequence Viewer

Length: 705 bp
ATGTCTTCACGACAATCGGTGAGGCACCCGAGTCACAACCATCCATTGCGCGGTCACAAATGCGAAGCCAAAGACGAAATCATCTGCTCCGGTTGTGATCTCGATCTGGTTGGTGCAGCTTTCAAATGCACAAAGTCATCAGATTGTGATTACTTCTTGCACAAGTCATGTTTTGAACTTCCACGTGAAACCAACCACAAATCTCACCAACCCCACACTTTGACTTTAATCTATTCCCCAAAGTCAACGTACACGTGTAATGCTTGCGGCGAATACGGATCAAGTTTCACGTACAACTGTTCAATCTGTCAGTACGATGTACATGTCGGATGTGTTTCAATGCCTGAAACAGTGAAGCGTGAAGATCACCCACATCCACTTACTCTTCTTTACGGTTCTCCTTATAACCAACCCGGTTTAGTTTCCAAATGCGATGTTTGTGAAGACATTGTACCGGATAATCTCTGGTCGTATTATTGCAAGGAATGTGATTACGCTACGCATTTACACTCATGTAAGAAAGAGGAAGAGGCAAAGAAAGAAGATCAAAAAGGAGAAGGAAGTAAAAACTCGATGAATTCGGAGTTAGCTGCAATGTTAGAGGCTCAAAGAGAAGTGGAGAGGATGCAGATTGAGATGCATTTGGCGATGCAAAGTGCTTTGATTTCGAAAAAGGCGAATAAGGCAGCTCTCAATTGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

234

Amino Acids

26.38

Weight (kDa)

6.26

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 67 - 112 9.3e-11 C1 domain
C1_2 PF03107 123 - 169 4.9e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17740 AT2G28270 AT2G44370 AT2G44380 AT2G44390 AT5G40590 AT5G43520
fragaria_vesca FvH4_7g00120
malus_domestica MD07G1002100.v1.1
prunus_persica Prupe.2G003600_v2.0.a1
pyrus_communis pycom02g26720
rosa_chinensis RchiOBHm_Chr1g0313371
rosa_multiflora Rmu_sc0000035.1_g000026
rosa_roxburghii Rroxscaffold_4G00332240
rosa_samantha Rh1AG003000 Rh1BG000100 Rh1CG001500 Rh1DG003000
rosa_wichuraiana Rw1G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 24
AccII CGCG 1 cut(s) 51
AciI CCGC 2 cut(s) 51, 267
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 577
AcvI CACGTG 2 cut(s) 185, 255
AfaI GTAC 5 cut(s) 251, 293, 314, 321, 453
AfiI CCNNNNNNNGG 1 cut(s) 50
AflIII ACRYGT 3 cut(s) 252, 254, 322
AgsI TTSAA 4 cut(s) 124, 176, 303, 339
AluBI AGCT 3 cut(s) 119, 590, 689
AluI AGCT 3 cut(s) 119, 590, 689
AlwI GGATC 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 28
ApeKI GCWGC 3 cut(s) 116, 590, 686
ApoI RAATTY 1 cut(s) 577
AspLEI GCGC 1 cut(s) 51
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 3 cut(s) 31, 197, 359
AsuII TTCGAA 1 cut(s) 668
AvaI CYCGRG 1 cut(s) 28
BanI GGYRCC 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BbrPI CACGTG 2 cut(s) 185, 255
BbsI GAAGAC 1 cut(s) 450
BbvI GCAGC 3 cut(s) 128, 577, 698
BccI CCATC 1 cut(s) 48
BcnI CCSGG 1 cut(s) 414
BisI GCNGC 4 cut(s) 117, 268, 591, 687
BlsI GCNGC 4 cut(s) 118, 269, 592, 688
Bme1390I CCNGG 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 3 cut(s) 615, 627, 639
BpiI GAAGAC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 414
BsaAI YACGTR 3 cut(s) 185, 255, 291
BsaBI GATNNNNATC 1 cut(s) 102
BsaWI WCCGGW 2 cut(s) 89, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse3DI GCAATG 2 cut(s) 44, 600
Bse8I GATNNNNATC 1 cut(s) 102
BseGI GGATG 4 cut(s) 40, 335, 373, 630
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 2 cut(s) 44, 600
BseXI GCAGC 3 cut(s) 128, 577, 698
BsgI GTGCAG 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 3 cut(s) 90, 414, 455
BslI CCNNNNNNNGG 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 28
Bsp119I TTCGAA 1 cut(s) 668
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 5 cut(s) 97, 103, 278, 364, 544
BspACI CCGC 2 cut(s) 51, 267
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 26
BspPI GGATC 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 668
BspT107I GGYRCC 1 cut(s) 24
BsrDI GCAATG 2 cut(s) 44, 600
BsrGI TGTACA 1 cut(s) 319
BssMI GATC 5 cut(s) 97, 103, 278, 364, 544
Bst4CI ACNGT 3 cut(s) 299, 352, 395
Bst6I CTCTTC 2 cut(s) 390, 522
BstAUI TGTACA 1 cut(s) 319
BstBAI YACGTR 3 cut(s) 185, 255, 291
BstBI TTCGAA 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 265
BstF5I GGATG 4 cut(s) 40, 335, 373, 630
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 5 cut(s) 100, 106, 281, 367, 547
BstMBI GATC 5 cut(s) 97, 103, 278, 364, 544
BstMWI GCNNNNNNNGC 1 cut(s) 683
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 412
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 3 cut(s) 128, 577, 698
BstV2I GAAGAC 1 cut(s) 450
BtgZI GCGATG 2 cut(s) 447, 662
BtsCI GGATG 4 cut(s) 40, 335, 373, 630
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 51
Csp6I GTAC 5 cut(s) 250, 292, 313, 320, 452
CviAII CATG 3 cut(s) 168, 323, 513
CviJI RGCY 5 cut(s) 68, 119, 590, 605, 689
CviKI_1 RGCY 5 cut(s) 68, 119, 590, 605, 689
CviQI GTAC 5 cut(s) 250, 292, 313, 320, 452
DpnI GATC 5 cut(s) 99, 105, 280, 366, 546
DpnII GATC 5 cut(s) 97, 103, 278, 364, 544
Eam1104I CTCTTC 2 cut(s) 390, 522
EarI CTCTTC 2 cut(s) 390, 522
Eco72I CACGTG 2 cut(s) 185, 255
Eco88I CYCGRG 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 642
FaeI CATG 3 cut(s) 171, 326, 516
FaiI YATR 4 cut(s) 169, 324, 405, 514
FatI CATG 3 cut(s) 167, 322, 512
Fnu4HI GCNGC 4 cut(s) 117, 268, 591, 687
FokI GGATG 4 cut(s) 27, 342, 360, 637
Fsp4HI GCNGC 4 cut(s) 117, 268, 591, 687
GlaI GCGC 1 cut(s) 50
GluI GCNGC 4 cut(s) 117, 268, 591, 687
HapII CCGG 3 cut(s) 90, 414, 455
HhaI GCGC 1 cut(s) 51
Hin1II CATG 3 cut(s) 171, 326, 516
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 1 cut(s) 31
HpaII CCGG 3 cut(s) 90, 414, 455
HphI GGTGA 3 cut(s) 31, 197, 359
Hpy166II GTNNAC 2 cut(s) 246, 252
Hpy188I TCNGA 3 cut(s) 142, 329, 583
Hpy188III TCNNGA 2 cut(s) 9, 101
Hpy8I GTNNAC 2 cut(s) 246, 252
HpyAV CCTTC 1 cut(s) 551
HpyCH4III ACNGT 3 cut(s) 299, 352, 395
HpyCH4IV ACGT 4 cut(s) 184, 248, 254, 290
HpyCH4V TGCA 9 cut(s) 116, 129, 160, 480, 593, 628, 640, 652, 699
HpyF10VI GCNNNNNNNGC 1 cut(s) 683
HpySE526I ACGT 4 cut(s) 184, 248, 254, 290
Hsp92II CATG 3 cut(s) 171, 326, 516
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 5 cut(s) 97, 103, 278, 364, 544
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 92, 103, 357, 427, 451, 468
Lsp1109I GCAGC 3 cut(s) 128, 577, 698
LweI GCATC 3 cut(s) 615, 627, 639
MaeII ACGT 4 cut(s) 184, 248, 254, 290
MaeIII GTNAC 2 cut(s) 32, 53
MalI GATC 5 cut(s) 99, 105, 280, 366, 546
MboI GATC 5 cut(s) 97, 103, 278, 364, 544
MboII GAAGA 5 cut(s) 374, 377, 455, 539, 554
MfeI CAATTG 1 cut(s) 694
MluCI AATT 2 cut(s) 577, 694
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 5 cut(s) 15, 517, 523, 595, 615
Mph1103I ATGCAT 1 cut(s) 642
MseI TTAA 1 cut(s) 227
MspI CCGG 3 cut(s) 90, 414, 455
MspR9I CCNGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 694
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 683
NciI CCSGG 1 cut(s) 414
NdeII GATC 5 cut(s) 97, 103, 278, 364, 544
NlaIII CATG 3 cut(s) 171, 326, 516
NlaIV GGNNCC 1 cut(s) 26
NmuCI GTSAC 2 cut(s) 32, 53
NsiI ATGCAT 1 cut(s) 642
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 1 cut(s) 668
PciI ACATGT 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 674
PkrI GCNGC 4 cut(s) 118, 269, 592, 688
PleI GAGTC 1 cut(s) 39
PmaCI CACGTG 2 cut(s) 185, 255
PmlI CACGTG 2 cut(s) 185, 255
PpsI GAGTC 1 cut(s) 39
Ppu21I YACGTR 3 cut(s) 185, 255, 291
PscI ACATGT 1 cut(s) 322
PsiI TTATAA 1 cut(s) 405
PspCI CACGTG 2 cut(s) 185, 255
PspN4I GGNNCC 1 cut(s) 26
RsaI GTAC 5 cut(s) 251, 293, 314, 321, 453
RsaNI GTAC 5 cut(s) 250, 292, 313, 320, 452
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 4 cut(s) 117, 268, 591, 687
Sau3AI GATC 5 cut(s) 97, 103, 278, 364, 544
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 414
SetI ASST 7 cut(s) 121, 187, 251, 257, 293, 592, 691
SfaNI GCATC 3 cut(s) 615, 627, 639
SfuI TTCGAA 1 cut(s) 668
Sse9I AATT 2 cut(s) 577, 694
SsiI CCGC 2 cut(s) 51, 267
StyD4I CCNGG 1 cut(s) 412
TaaI ACNGT 3 cut(s) 299, 352, 395
TaiI ACGT 4 cut(s) 187, 251, 257, 293
TaqI TCGA 3 cut(s) 102, 572, 668
TasI AATT 2 cut(s) 577, 694
TatI WGTACW 1 cut(s) 319
TauI GCSGC 1 cut(s) 270
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 2 cut(s) 32, 53
TseI GCWGC 3 cut(s) 116, 590, 686
Tsp45I GTSAC 2 cut(s) 32, 53
TspDTI ATGAA 1 cut(s) 590
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 357
XapI RAATTY 1 cut(s) 577
XceI RCATGY 1 cut(s) 326
Zsp2I ATGCAT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.