FvH4_7g00120

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011773
Physical Location & Seq
Reverse (-)
705399 .. 706037
639 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00120.t1

Sequence Viewer

Length: 639 bp
ATGGTGAAGCATTTCAGCCACCGGCATGAGTTGGAGCTGTGCCCAACAATGCCTCAACCAGTGCATCAAGATGATGAAGCATTCTTTTGTTTCGTCTGCGAGTATGAGCTAGACCTCCTCCACCATTCCGATGATGATACTGCTCCTGTAATCTACCAATGCACCAAGTCTTCTAATTCCAAGTGCCATTATTACCTCCACGACTTGTGCTTCCAACTCCCCAGAGAAATTCTACACAACTCTCACCCCAAACACCCTCTTCTTCTCTCCCTTCCTTCCTACCAAAACGACAACCGCGGCGAGTTCATATGTAATGCCTGCGGTGAATCCGGCACTTGCTTCAGGTTTCACTGCCCCAATTGCATGTTCAATCTCCATGTTCAATGCGCTACTTTGCCTCAAACTCCAAGCCGCCGTGAGCATCATCAACACCCGCTTACCCTCCTCTTTTCGGTGCCAAATCCTCGTAATAATGTACAACAGAAGATGACGAGGATATGTGACTTGTGTGAAGGCTCTATCTCTCAAGGCTGCTGGCTCTACTACTGTAAAGATTGTGATTATGGTACCCATCTCCATTGTTCGGCTGCTGAAGCTGATGATGATCATCATGAAAAACCATTGTTACAATCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

213

Amino Acids

24.58

Weight (kDa)

5.93

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 80 - 130 2e-10 C1 domain
C1_2 PF03107 141 - 194 3.7e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17740 AT2G28270 AT2G44370 AT2G44380 AT2G44390 AT5G40590 AT5G43520
fragaria_vesca FvH4_7g00120
malus_domestica MD07G1002100.v1.1
prunus_persica Prupe.2G003600_v2.0.a1
pyrus_communis pycom02g26720
rosa_chinensis RchiOBHm_Chr1g0313371
rosa_multiflora Rmu_sc0000035.1_g000026
rosa_roxburghii Rroxscaffold_4G00332240
rosa_samantha Rh1AG003000 Rh1BG000100 Rh1CG001500 Rh1DG003000
rosa_wichuraiana Rw1G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 2 cut(s) 454, 566
AccII CGCG 1 cut(s) 297
AciI CCGC 5 cut(s) 295, 297, 321, 412, 434
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 2 cut(s) 325, 612
AfaI GTAC 2 cut(s) 477, 568
AfiI CCNNNNNNNGG 2 cut(s) 451, 583
AgsI TTSAA 2 cut(s) 370, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 3 cut(s) 37, 109, 596
AluI AGCT 3 cut(s) 37, 109, 596
ApeKI GCWGC 2 cut(s) 531, 587
ApoI RAATTY 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 11
Asp718I GGTACC 1 cut(s) 566
AspLEI GCGC 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 16, 236, 335
BaeGI GKGCMC 1 cut(s) 44
BanI GGYRCC 2 cut(s) 454, 566
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 518, 574
BccI CCATC 1 cut(s) 579
BceAI ACGGC 1 cut(s) 399
BclI TGATCA 1 cut(s) 604
BfaI CTAG 1 cut(s) 110
BisI GCNGC 4 cut(s) 298, 412, 532, 588
BlsI GCNGC 4 cut(s) 299, 413, 533, 589
BmiI GGNNCC 2 cut(s) 456, 568
BmsI GCATC 2 cut(s) 73, 430
BpiI GAAGAC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 510
BsaBI GATNNNNATC 2 cut(s) 603, 606
BsaJI CCNNGG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 583
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 59
Bse8I GATNNNNATC 2 cut(s) 603, 606
BseDI CCNNGG 1 cut(s) 295
BseJI GATNNNNATC 2 cut(s) 603, 606
BseLI CCNNNNNNNGG 2 cut(s) 451, 583
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 2 cut(s) 107, 434
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 2 cut(s) 518, 574
Bsh1236I CGCG 1 cut(s) 297
BshNI GGYRCC 2 cut(s) 454, 566
BsiSI CCGG 2 cut(s) 22, 330
BslI CCNNNNNNNGG 2 cut(s) 451, 583
BsmI GAATGC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 1 cut(s) 604
BspACI CCGC 5 cut(s) 295, 297, 321, 412, 434
BspFNI CGCG 1 cut(s) 297
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 2 cut(s) 456, 568
BspT107I GGYRCC 2 cut(s) 454, 566
BsrFI RCCGGY 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 475
BsrI ACTGG 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 604
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 475
BstC8I GCNNGC 2 cut(s) 319, 536
BstDSI CCRYGG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 1 cut(s) 607
BstMBI GATC 1 cut(s) 604
BstMWI GCNNNNNNNGC 2 cut(s) 360, 593
BstNSI RCATGY 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 44
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 518, 574
BstV2I GAAGAC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 295
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 66, 349
Cac8I GCNNGC 2 cut(s) 319, 536
CciI TCATGA 1 cut(s) 610
CfoI GCGC 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 21
Cfr42I CCGCGG 1 cut(s) 298
Csp6I GTAC 2 cut(s) 476, 567
CviAII CATG 4 cut(s) 26, 364, 377, 611
CviJI RGCY 9 cut(s) 18, 37, 109, 411, 516, 531, 538, 587, 596
CviKI_1 RGCY 9 cut(s) 18, 37, 109, 411, 516, 531, 538, 587, 596
CviQI GTAC 2 cut(s) 476, 567
DpnI GATC 1 cut(s) 606
DpnII GATC 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco57I CTGAAG 2 cut(s) 325, 612
FaeI CATG 4 cut(s) 29, 367, 380, 614
FaiI YATR 9 cut(s) 27, 105, 308, 310, 365, 378, 499, 564, 612
FatI CATG 4 cut(s) 25, 363, 376, 610
FauI CCCGC 1 cut(s) 441
FauNDI CATATG 1 cut(s) 308
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 4 cut(s) 298, 412, 532, 588
Fsp4HI GCNGC 4 cut(s) 298, 412, 532, 588
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 388
GluI GCNGC 4 cut(s) 298, 412, 532, 588
HapII CCGG 2 cut(s) 22, 330
HhaI GCGC 1 cut(s) 389
Hin1II CATG 4 cut(s) 29, 367, 380, 614
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HinfI GANTC 1 cut(s) 326
HpaII CCGG 2 cut(s) 22, 330
HphI GGTGA 3 cut(s) 16, 236, 335
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 68, 611
HpyAV CCTTC 3 cut(s) 281, 285, 506
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 3 cut(s) 64, 162, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 360, 593
Hsp92II CATG 4 cut(s) 29, 367, 380, 614
HspAI GCGC 1 cut(s) 387
KpnI GGTACC 1 cut(s) 570
Ksp22I TGATCA 1 cut(s) 604
KspI CCGCGG 1 cut(s) 298
Kzo9I GATC 1 cut(s) 604
LmnI GCTCC 2 cut(s) 34, 148
LpnPI CCDG 8 cut(s) 35, 72, 159, 235, 328, 331, 343, 520
Lsp1109I GCAGC 2 cut(s) 518, 574
LweI GCATC 2 cut(s) 73, 430
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 500, 624
MalI GATC 1 cut(s) 606
MboI GATC 1 cut(s) 604
MboII GAAGA 4 cut(s) 162, 251, 254, 496
MfeI CAATTG 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 4 cut(s) 175, 228, 358, 633
MmeI TCCRAC 2 cut(s) 12, 238
MroXI GAANNNNTTC 1 cut(s) 11
MslI CAYNNNNRTG 3 cut(s) 24, 69, 129
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 2 cut(s) 22, 330
MunI CAATTG 1 cut(s) 358
Mva1269I GAATGC 1 cut(s) 80
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 360, 593
NdeI CATATG 1 cut(s) 308
NdeII GATC 1 cut(s) 604
NlaIII CATG 4 cut(s) 29, 367, 380, 614
NlaIV GGNNCC 2 cut(s) 456, 568
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 1 cut(s) 367
PagI TCATGA 1 cut(s) 610
PctI GAATGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 4 cut(s) 299, 413, 533, 589
PspN4I GGNNCC 2 cut(s) 456, 568
RsaI GTAC 2 cut(s) 477, 568
RsaNI GTAC 2 cut(s) 476, 567
RseI CAYNNNNRTG 3 cut(s) 24, 69, 129
SacII CCGCGG 1 cut(s) 298
SatI GCNGC 4 cut(s) 298, 412, 532, 588
Sau3AI GATC 1 cut(s) 604
SduI GDGCHC 1 cut(s) 44
SetI ASST 6 cut(s) 39, 111, 117, 198, 347, 598
SfaNI GCATC 2 cut(s) 73, 430
Sfr303I CCGCGG 1 cut(s) 298
SgrBI CCGCGG 1 cut(s) 298
SmiMI CAYNNNNRTG 3 cut(s) 24, 69, 129
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 4 cut(s) 175, 228, 358, 633
SsiI CCGC 5 cut(s) 295, 297, 321, 412, 434
SspMI CTAG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 548
TasI AATT 4 cut(s) 175, 228, 358, 633
TatI WGTACW 1 cut(s) 475
TauI GCSGC 2 cut(s) 300, 414
TfiI GAWTC 1 cut(s) 326
TscAI CASTG 2 cut(s) 66, 356
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 2 cut(s) 531, 587
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 3 cut(s) 90, 295, 627
TspRI CASTG 2 cut(s) 66, 356
XapI RAATTY 1 cut(s) 228
XceI RCATGY 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.