AT2G28270

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011773
Physical Location & Seq
Forward (+)
12053542 .. 12054538
997 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28270.1

Sequence Viewer

Length: 747 bp
ATGGGTTCAGGAAAAACTAACCGTCCATCAGTGAGACACCCGAGTCACAATCATCCGTTGCGGGTCTTCAACTCCAAAGAAGAAGATGAGATCATTTGCTCCGGATGCGAACATGATCTAATTGGGCAAGCTTTCAAGTGTACAAAGTCAGAGTGCGATTACTTCTTGCACAAGTCATGTTTCGACCTTCCCGGTGAGATCCATCACAAGTCTCACACAAATCACCCTTTGACCTTGCTCCATTCTCCACCGAATGGCCTATCCACTTACACGTGCGATGCGTGCGGTGAGTATGGATCTGCTTTCACTTACCATTGCTCAGAGTGCAAATACCATGTTCACGTGGGATGTGCGTTTGTCCCCGAGAACGTGAAGCGTGAAGATCACGAACACCCACTCACTCTACTTTACAACACACCATGCAAAGGTCGTAAGGACGGTGTGGTGTTCATATGTGATGTTTGCGAAGTAGATGTGTCGGAGAATCTTTGGGTGTATTACTGCAAAGAATGTGACTATGGGACACATGTTCATTCATGCACGACAAATGAAGACAATGGGCCAAAAAAAGGAGGAGAAGAAGAAGGAGAATCAAGCTCATTATCGACTTCAAGGATAAAGTCATTAATGGAGGCTGAAAAAGAGATGAGAGAGATGGCGATAATACATCAACTACAGTTAGATGCTCTTGACGCAGCAGGTAGTTATGTCGGTTCATGGGAACCAAGGAGAAAAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

248

Amino Acids

28.02

Weight (kDa)

5.73

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 14 - 60 4.4e-08 C1 domain
C1_2 PF03107 70 - 118 3.1e-10 C1 domain
C1_2 PF03107 129 - 177 9.3e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17740 AT2G28270 AT2G44370 AT2G44380 AT2G44390 AT5G40590 AT5G43520
fragaria_vesca FvH4_7g00120
malus_domestica MD07G1002100.v1.1
prunus_persica Prupe.2G003600_v2.0.a1
pyrus_communis pycom02g26720
rosa_chinensis RchiOBHm_Chr1g0313371
rosa_multiflora Rmu_sc0000035.1_g000026
rosa_roxburghii Rroxscaffold_4G00332240
rosa_samantha Rh1AG003000 Rh1BG000100 Rh1CG001500 Rh1DG003000
rosa_wichuraiana Rw1G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 689
AccB7I CCANNNNNTGG 1 cut(s) 254
AccIII TCCGGA 1 cut(s) 101
AciI CCGC 2 cut(s) 61, 285
AclWI GGATC 2 cut(s) 193, 304
AcvI CACGTG 2 cut(s) 273, 343
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 254, 425, 569
AflIII ACRYGT 2 cut(s) 270, 526
AgsI TTSAA 3 cut(s) 70, 136, 612
AjuI GAANNNNNNNTTGG 1 cut(s) 724
AluBI AGCT 2 cut(s) 131, 597
AluI AGCT 2 cut(s) 131, 597
Alw26I GTCTC 2 cut(s) 28, 216
AlwI GGATC 2 cut(s) 193, 304
Ama87I CYCGRG 2 cut(s) 40, 362
Aor13HI TCCGGA 1 cut(s) 101
AoxI GGCC 2 cut(s) 256, 560
ApeKI GCWGC 1 cut(s) 695
AseI ATTAAT 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 560
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 3 cut(s) 206, 215, 299
AvaI CYCGRG 2 cut(s) 40, 362
BbrPI CACGTG 2 cut(s) 273, 343
BbsI GAAGAC 2 cut(s) 58, 558
BbvI GCAGC 1 cut(s) 707
BccI CCATC 3 cut(s) 34, 210, 649
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 28, 216
BfmI CTRYAG 1 cut(s) 674
BfuAI ACCTGC 1 cut(s) 689
BisI GCNGC 1 cut(s) 696
BlsI GCNGC 1 cut(s) 697
Bme1390I CCNGG 1 cut(s) 192
BmeT110I CYCGRG 2 cut(s) 40, 362
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 1 cut(s) 723
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 3 cut(s) 95, 268, 673
BpiI GAAGAC 2 cut(s) 58, 558
BpuMI CCSGG 1 cut(s) 192
BsaAI YACGTR 2 cut(s) 273, 343
BsaJI CCNNGG 1 cut(s) 725
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 425, 569
Bse3DI GCAATG 1 cut(s) 313
BseAI TCCGGA 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 725
BseGI GGATG 3 cut(s) 52, 110, 353
BseLI CCNNNNNNNGG 3 cut(s) 254, 425, 569
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 588
BseXI GCAGC 1 cut(s) 707
BshFI GGCC 2 cut(s) 258, 562
BsiHKCI CYCGRG 2 cut(s) 40, 362
BsiSI CCGG 2 cut(s) 102, 192
BslFI GGGAC 2 cut(s) 344, 535
BslI CCNNNNNNNGG 3 cut(s) 254, 425, 569
BsmAI GTCTC 2 cut(s) 28, 216
BsmFI GGGAC 2 cut(s) 344, 535
BsnI GGCC 2 cut(s) 258, 562
BsoBI CYCGRG 2 cut(s) 40, 362
Bsp13I TCCGGA 1 cut(s) 101
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 5 cut(s) 90, 115, 198, 296, 382
BspACI CCGC 2 cut(s) 61, 285
BspANI GGCC 2 cut(s) 258, 562
BspCNI CTCAG 1 cut(s) 332
BspEI TCCGGA 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 723
BspMI ACCTGC 1 cut(s) 689
BspPI GGATC 2 cut(s) 193, 304
BsrDI GCAATG 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 725
BssMI GATC 5 cut(s) 90, 115, 198, 296, 382
BssT1I CCWWGG 1 cut(s) 725
Bst4CI ACNGT 3 cut(s) 23, 440, 678
BstAUI TGTACA 1 cut(s) 140
BstBAI YACGTR 2 cut(s) 273, 343
BstC8I GCNNGC 2 cut(s) 129, 283
BstDEI CTNAG 1 cut(s) 319
BstF5I GGATG 3 cut(s) 52, 110, 353
BstKTI GATC 5 cut(s) 93, 118, 201, 299, 385
BstMAI GTCTC 2 cut(s) 28, 216
BstMBI GATC 5 cut(s) 90, 115, 198, 296, 382
BstMWI GCNNNNNNNGC 4 cut(s) 105, 282, 324, 692
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 674
BstV1I GCAGC 1 cut(s) 707
BstV2I GAAGAC 2 cut(s) 58, 558
BstX2I RGATCY 2 cut(s) 198, 296
BstYI RGATCY 2 cut(s) 198, 296
BsuRI GGCC 2 cut(s) 258, 562
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 52, 110, 353
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 689
Cac8I GCNNGC 2 cut(s) 129, 283
Cfr13I GGNCC 1 cut(s) 560
CseI GACGC 1 cut(s) 701
Csp6I GTAC 1 cut(s) 141
CviAII CATG 7 cut(s) 113, 177, 335, 420, 527, 537, 717
CviJI RGCY 5 cut(s) 131, 258, 562, 597, 635
CviKI_1 RGCY 5 cut(s) 131, 258, 562, 597, 635
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 319
DpnI GATC 5 cut(s) 92, 117, 200, 298, 384
DpnII GATC 5 cut(s) 90, 115, 198, 296, 382
DrdI GACNNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 725
Eco72I CACGTG 2 cut(s) 273, 343
Eco88I CYCGRG 2 cut(s) 40, 362
EcoT14I CCWWGG 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 725
FaeI CATG 7 cut(s) 116, 180, 338, 423, 530, 540, 720
FaqI GGGAC 2 cut(s) 344, 535
FatI CATG 7 cut(s) 112, 176, 334, 419, 526, 536, 716
FauI CCCGC 1 cut(s) 54
FauNDI CATATG 1 cut(s) 452
Fnu4HI GCNGC 1 cut(s) 696
FokI GGATG 3 cut(s) 39, 117, 360
Fsp4HI GCNGC 1 cut(s) 696
GluI GCNGC 1 cut(s) 696
HaeIII GGCC 2 cut(s) 258, 562
HapII CCGG 2 cut(s) 102, 192
HgaI GACGC 1 cut(s) 701
Hin1II CATG 7 cut(s) 116, 180, 338, 423, 530, 540, 720
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 3 cut(s) 43, 484, 590
HpaII CCGG 2 cut(s) 102, 192
HphI GGTGA 3 cut(s) 206, 215, 299
Hpy166II GTNNAC 2 cut(s) 141, 340
Hpy188I TCNGA 3 cut(s) 151, 322, 481
Hpy188III TCNNGA 4 cut(s) 9, 102, 386, 689
Hpy8I GTNNAC 2 cut(s) 141, 340
HpyAV CCTTC 2 cut(s) 197, 578
HpyCH4III ACNGT 3 cut(s) 23, 440, 678
HpyCH4IV ACGT 3 cut(s) 272, 342, 369
HpyCH4V TGCA 5 cut(s) 169, 327, 423, 504, 540
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 282, 324, 692
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 3 cut(s) 272, 342, 369
Hsp92II CATG 7 cut(s) 116, 180, 338, 423, 530, 540, 720
Kpn2I TCCGGA 1 cut(s) 101
Kzo9I GATC 5 cut(s) 90, 115, 198, 296, 382
LmnI GCTCC 2 cut(s) 104, 243
LpnPI CCDG 3 cut(s) 115, 205, 684
Lsp1109I GCAGC 1 cut(s) 707
LweI GCATC 3 cut(s) 95, 268, 673
MaeII ACGT 3 cut(s) 272, 342, 369
MaeIII GTNAC 2 cut(s) 44, 512
MalI GATC 5 cut(s) 92, 117, 200, 298, 384
MboI GATC 5 cut(s) 90, 115, 198, 296, 382
MboII GAAGA 7 cut(s) 58, 92, 95, 392, 563, 590, 593
MflI RGATCY 2 cut(s) 198, 296
MluCI AATT 1 cut(s) 120
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 2 cut(s) 566, 625
MroI TCCGGA 1 cut(s) 101
MseI TTAA 1 cut(s) 626
MspI CCGG 2 cut(s) 102, 192
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 105, 282, 324, 692
NciI CCSGG 1 cut(s) 192
NdeI CATATG 1 cut(s) 452
NdeII GATC 5 cut(s) 90, 115, 198, 296, 382
NlaIII CATG 7 cut(s) 116, 180, 338, 423, 530, 540, 720
NlaIV GGNNCC 1 cut(s) 723
NmuCI GTSAC 2 cut(s) 44, 512
NspI RCATGY 1 cut(s) 530
PciI ACATGT 1 cut(s) 526
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PfeI GAWTC 2 cut(s) 484, 590
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 1 cut(s) 697
PleI GAGTC 1 cut(s) 51
PmaCI CACGTG 2 cut(s) 273, 343
PmlI CACGTG 2 cut(s) 273, 343
PpsI GAGTC 1 cut(s) 51
Ppu21I YACGTR 2 cut(s) 273, 343
PscI ACATGT 1 cut(s) 526
PshBI ATTAAT 1 cut(s) 626
PspCI CACGTG 2 cut(s) 273, 343
PspN4I GGNNCC 1 cut(s) 723
PspPI GGNCC 1 cut(s) 560
PsuI RGATCY 2 cut(s) 198, 296
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 626
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 5 cut(s) 90, 115, 198, 296, 382
Sau96I GGNCC 1 cut(s) 560
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 192
SetI ASST 9 cut(s) 133, 189, 236, 275, 345, 372, 430, 599, 703
SfaNI GCATC 3 cut(s) 95, 268, 673
SfcI CTRYAG 1 cut(s) 674
Sse9I AATT 1 cut(s) 120
SsiI CCGC 2 cut(s) 61, 285
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 3 cut(s) 23, 440, 678
TaiI ACGT 3 cut(s) 275, 345, 372
TaqI TCGA 2 cut(s) 183, 605
TasI AATT 1 cut(s) 120
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 2 cut(s) 484, 590
Tru1I TTAA 1 cut(s) 626
Tru9I TTAA 1 cut(s) 626
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 2 cut(s) 44, 512
TseI GCWGC 1 cut(s) 695
Tsp45I GTSAC 2 cut(s) 44, 512
TspDTI ATGAA 5 cut(s) 439, 521, 525, 564, 705
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 254
VspI ATTAAT 1 cut(s) 626
XceI RCATGY 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.