Prupe.2G003600_v2.0.a1

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011773
Physical Location & Seq
Reverse (-)
381329 .. 381913
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G003600.1

Sequence Viewer

Length: 585 bp
TCGATGGTGAAACATTTCAGCCACCGCCATGAGTTGTGCTCATATCAAGTGCAAGAGGATGATGAAATCATTTGCTCCAGCTGTGAGCTACCTCTAGACCTCATGATGAATTCAGGTACTTCTGCTTACAAATGCACCAAGTCCAAGTGTAACTTTTACCTCCACGACTTGTGCTTTGAACTTCCCCAAGAAATCAAACACAAGTCTCACCCCAAACACCCTCTTACTCTCTCCACCCCTCCCTATGAATATGGTGAGTTCACGTGCGATGCATGTGGTGAATTTGGCACTTGTTTCACCTTCCACTGCACCCATTGCAAATATGATCTTCATGTTCAGTGTGCTACTTTGCCTGAAACCCTGAGCCATCACCATCATCACCACCTGCTCACTCTGCTTTATTCATTGCCAGATCATCATGAGAATGAAGGCAAGCTTAATATCTGTGATTTTTGTCAAGGCACTTTCCCTCGGGGCTGCTGGCTCTACTCTTGCAGAGATTGTGACTATAGTATCCATCTGGGGTGTTCAACTGCTGAATCTGATCAAGATTACCCGGAAGATCAAATAATAATCTCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

195

Amino Acids

22.35

Weight (kDa)

5.57

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17740 AT2G28270 AT2G44370 AT2G44380 AT2G44390 AT5G40590 AT5G43520
fragaria_vesca FvH4_7g00120
malus_domestica MD07G1002100.v1.1
prunus_persica Prupe.2G003600_v2.0.a1
pyrus_communis pycom02g26720
rosa_chinensis RchiOBHm_Chr1g0313371
rosa_multiflora Rmu_sc0000035.1_g000026
rosa_roxburghii Rroxscaffold_4G00332240
rosa_samantha Rh1AG003000 Rh1BG000100 Rh1CG001500 Rh1DG003000
rosa_wichuraiana Rw1G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 393
AciI CCGC 1 cut(s) 25
AcsI RAATTY 2 cut(s) 109, 281
AcvI CACGTG 1 cut(s) 264
AfaI GTAC 1 cut(s) 118
AgsI TTSAA 2 cut(s) 179, 531
AluBI AGCT 3 cut(s) 81, 88, 436
AluI AGCT 3 cut(s) 81, 88, 436
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 471
ApeKI GCWGC 1 cut(s) 477
ApoI RAATTY 2 cut(s) 109, 281
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
Asp700I GAANNNNTTC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 7 cut(s) 19, 200, 266, 289, 290, 362, 371
AvaI CYCGRG 1 cut(s) 471
BaeI ACNNNNGTAYC 2 cut(s) 496, 529
BbrPI CACGTG 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 464
BccI CCATC 3 cut(s) 375, 381, 525
BciVI GTATCC 1 cut(s) 524
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 557
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 508
BfuAI ACCTGC 1 cut(s) 393
BfuI GTATCC 1 cut(s) 524
BisI GCNGC 1 cut(s) 478
BlsI GCNGC 1 cut(s) 479
Bme1390I CCNGG 1 cut(s) 557
BmeT110I CYCGRG 1 cut(s) 471
BmrFI CCNGG 1 cut(s) 557
BmsI GCATC 1 cut(s) 259
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpmI CTGGAG 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 557
BsaAI YACGTR 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 470
Bse3DI GCAATG 2 cut(s) 313, 404
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 1 cut(s) 64
BseMI GCAATG 2 cut(s) 313, 404
BseMII CTCAG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 471
BsiSI CCGG 1 cut(s) 557
BsmAI GTCTC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 4 cut(s) 325, 412, 544, 562
BspACI CCGC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 354
BspHI TCATGA 2 cut(s) 102, 418
BspMI ACCTGC 1 cut(s) 393
BsrDI GCAATG 2 cut(s) 313, 404
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 4 cut(s) 325, 412, 544, 562
BstAPI GCANNNNNTGC 1 cut(s) 315
BstBAI YACGTR 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 434, 482
BstDEI CTNAG 1 cut(s) 362
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 4 cut(s) 328, 415, 547, 565
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 4 cut(s) 325, 412, 544, 562
BstMWI GCNNNNNNNGC 2 cut(s) 315, 394
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 508
BstV1I GCAGC 1 cut(s) 464
BsuI GTATCC 1 cut(s) 524
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 304, 344
BveI ACCTGC 1 cut(s) 393
Cac8I GCNNGC 2 cut(s) 434, 482
CciI TCATGA 2 cut(s) 102, 418
Csp6I GTAC 1 cut(s) 117
CviAII CATG 5 cut(s) 29, 103, 273, 332, 419
CviJI RGCY 7 cut(s) 21, 81, 88, 366, 436, 477, 484
CviKI_1 RGCY 7 cut(s) 21, 81, 88, 366, 436, 477, 484
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 1 cut(s) 362
DpnI GATC 4 cut(s) 327, 414, 546, 564
DpnII GATC 4 cut(s) 325, 412, 544, 562
Eco72I CACGTG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 471
EcoRI GAATTC 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 274
FaeI CATG 5 cut(s) 32, 106, 276, 335, 422
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 420, 452
FatI CATG 5 cut(s) 28, 102, 272, 331, 418
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 1 cut(s) 478
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 478
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 478
GsuI CTGGAG 1 cut(s) 61
HapII CCGG 1 cut(s) 557
Hin1II CATG 5 cut(s) 32, 106, 276, 335, 422
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 1 cut(s) 539
HpaII CCGG 1 cut(s) 557
HphI GGTGA 7 cut(s) 19, 200, 266, 289, 290, 362, 371
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 5 cut(s) 95, 103, 419, 548, 582
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 2 cut(s) 310, 422
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 6 cut(s) 52, 135, 272, 309, 318, 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 394
HpyF3I CTNAG 1 cut(s) 362
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 5 cut(s) 32, 106, 276, 335, 422
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 4 cut(s) 325, 412, 544, 562
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 9 cut(s) 91, 99, 366, 374, 398, 423, 466, 506, 570
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 149, 503
MalI GATC 4 cut(s) 327, 414, 546, 564
MboI GATC 4 cut(s) 325, 412, 544, 562
MboII GAAGA 2 cut(s) 320, 572
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 2 cut(s) 109, 281
MnlI CCTC 7 cut(s) 49, 102, 110, 170, 231, 249, 480
Mph1103I ATGCAT 1 cut(s) 274
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 2 cut(s) 27, 423
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 1 cut(s) 557
MwoI GCNNNNNNNGC 2 cut(s) 315, 394
NciI CCSGG 1 cut(s) 557
NdeII GATC 4 cut(s) 325, 412, 544, 562
NlaIII CATG 5 cut(s) 32, 106, 276, 335, 422
NmuCI GTSAC 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 1 cut(s) 276
PagI TCATGA 2 cut(s) 102, 418
PaqCI CACCTGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 539
PkrI GCNGC 1 cut(s) 479
PmaCI CACGTG 1 cut(s) 264
PmlI CACGTG 1 cut(s) 264
Ppu21I YACGTR 1 cut(s) 264
PspCI CACGTG 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 81
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 2 cut(s) 27, 423
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 1 cut(s) 478
Sau3AI GATC 4 cut(s) 325, 412, 544, 562
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 1 cut(s) 41
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 508
SmiMI CAYNNNNRTG 2 cut(s) 27, 423
Sse9I AATT 2 cut(s) 109, 281
SsiI CCGC 1 cut(s) 25
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 555
TaiI ACGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 2
TasI AATT 2 cut(s) 109, 281
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 2 cut(s) 311, 344
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 1 cut(s) 477
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 6 cut(s) 78, 122, 261, 320, 393, 441
TspRI CASTG 2 cut(s) 311, 344
XapI RAATTY 2 cut(s) 109, 281
XbaI TCTAGA 1 cut(s) 94
XceI RCATGY 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.