AT2G44390

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011773
Physical Location & Seq
Reverse (-)
18325811 .. 18326551
741 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44390.1

Sequence Viewer

Length: 630 bp
ATGGCTTCAAAAAAACCTGTTAATCGCCCATCCGTGAGGCATGCGAGTCATAACCATCCGCTGCGTGTCTTTAAAGCTCGAGACGAAGATGAGGTCGTCTGCTCTGGATGTGAGCTCGATCTAACGGGACAAGCTTTCAAGTGTATAAATGAGACTTACACGTGTGATGCATGCGGTGAGTACGGATCCGGATTCACTTACAATTGTTCTGAATGTCAATATGATCTTCATGTCGGATGTGCGTTTATCCCGGAGACCGTGGAGCGGGAAGATCACGAACACCCACTCACTCTTCTCTACAATACACCATGCAAAGGCTGTGAGGACGGTGCGATGTTCATATGTAATGTTTGTGAAGAAGATATGTCGGAGAATCTATGGGTTTATTATTGCAAAGAATGTGATTATGGGACGCATGTGCATTCTTGCGCGGTTTATGAAGACGATGAGCCAAATAATAGAGGAGGAGAAGAAGGAGAAGCGATGAGCTCGGCGGTTTCGAGGATGAAGTCGTTGATGAAGGCTGAGGATGAGTTGGCGGCGGTACAGCTCGAGGCACGTATGAAGCGAGACGCTAATAATGCTATACTCGGTTTATATGCTGAACCAAAGCGGAGATATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

209

Amino Acids

23.67

Weight (kDa)

4.86

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 50 - 81 1.7e-06 C1 domain
C1_2 PF03107 92 - 143 5.6e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17740 AT2G28270 AT2G44370 AT2G44380 AT2G44390 AT5G40590 AT5G43520
fragaria_vesca FvH4_7g00120
malus_domestica MD07G1002100.v1.1
prunus_persica Prupe.2G003600_v2.0.a1
pyrus_communis pycom02g26720
rosa_chinensis RchiOBHm_Chr1g0313371
rosa_multiflora Rmu_sc0000035.1_g000026
rosa_roxburghii Rroxscaffold_4G00332240
rosa_samantha Rh1AG003000 Rh1BG000100 Rh1CG001500 Rh1DG003000
rosa_wichuraiana Rw1G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 265
AccII CGCG 1 cut(s) 431
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 8 cut(s) 59, 174, 265, 431, 494, 539, 542, 613
AclWI GGATC 2 cut(s) 180, 193
AcvI CACGTG 1 cut(s) 162
AfaI GTAC 2 cut(s) 182, 546
AfiI CCNNNNNNNGG 2 cut(s) 264, 314
AflIII ACRYGT 2 cut(s) 159, 161
AgsI TTSAA 2 cut(s) 9, 139
AluBI AGCT 5 cut(s) 77, 115, 134, 489, 550
AluI AGCT 5 cut(s) 77, 115, 134, 489, 550
Alw21I GWGCWC 2 cut(s) 117, 491
Alw26I GTCTC 4 cut(s) 75, 146, 248, 564
AlwI GGATC 2 cut(s) 180, 193
Ama87I CYCGRG 2 cut(s) 78, 551
Aor13HI TCCGGA 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 61
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AspLEI GCGC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 188
AvaI CYCGRG 2 cut(s) 78, 551
BamHI GGATCC 1 cut(s) 185
BanII GRGCYC 2 cut(s) 117, 491
BbrPI CACGTG 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 117, 491
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 1 cut(s) 48
BccI CCATC 2 cut(s) 37, 63
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 4 cut(s) 75, 146, 248, 564
BisI GCNGC 2 cut(s) 62, 540
BlsI GCNGC 2 cut(s) 63, 541
Bme1390I CCNGG 1 cut(s) 251
BmeT110I CYCGRG 2 cut(s) 78, 551
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 447
Bpu10I CCTNAGC 1 cut(s) 525
BpuMI CCSGG 1 cut(s) 251
BsaAI YACGTR 2 cut(s) 162, 560
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 314
BseAI TCCGGA 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 6 cut(s) 29, 55, 113, 242, 510, 535
BseLI CCNNNNNNNGG 2 cut(s) 264, 314
BseMII CTCAG 1 cut(s) 516
BseRI GAGGAG 2 cut(s) 477, 480
BseXI GCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 431
BsiHKAI GWGCWC 2 cut(s) 117, 491
BsiHKCI CYCGRG 2 cut(s) 78, 551
BsiSI CCGG 2 cut(s) 189, 251
BslFI GGGAC 2 cut(s) 141, 424
BslI CCNNNNNNNGG 2 cut(s) 264, 314
BsmAI GTCTC 4 cut(s) 75, 146, 248, 564
BsmBI CGTCTC 2 cut(s) 75, 564
BsmFI GGGAC 2 cut(s) 141, 424
BsmI GAATGC 1 cut(s) 421
Bso31I GGTCTC 1 cut(s) 248
BsoBI CYCGRG 2 cut(s) 78, 551
Bsp1286I GDGCHC 2 cut(s) 117, 491
Bsp13I TCCGGA 1 cut(s) 188
Bsp143I GATC 4 cut(s) 118, 185, 223, 271
BspACI CCGC 8 cut(s) 59, 174, 265, 431, 494, 539, 542, 613
BspCNI CTCAG 1 cut(s) 517
BspEI TCCGGA 1 cut(s) 188
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 2 cut(s) 180, 193
BspTNI GGTCTC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 4 cut(s) 118, 185, 223, 271
Bst4CI ACNGT 2 cut(s) 259, 329
Bst6I CTCTTC 1 cut(s) 297
BstBAI YACGTR 2 cut(s) 162, 560
BstC8I GCNNGC 2 cut(s) 42, 172
BstDEI CTNAG 1 cut(s) 525
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 6 cut(s) 29, 55, 113, 242, 510, 535
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 4 cut(s) 121, 188, 226, 274
BstMAI GTCTC 4 cut(s) 75, 146, 248, 564
BstMBI GATC 4 cut(s) 118, 185, 223, 271
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNSI RCATGY 3 cut(s) 44, 174, 419
BstSCI CCNGG 1 cut(s) 249
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 258
BtgZI GCGATG 2 cut(s) 347, 497
BtsCI GGATG 6 cut(s) 29, 55, 113, 242, 510, 535
Cac8I GCNNGC 2 cut(s) 42, 172
CfoI GCGC 1 cut(s) 431
CseI GACGC 2 cut(s) 421, 581
Csp6I GTAC 2 cut(s) 181, 545
CviAII CATG 5 cut(s) 41, 171, 230, 309, 416
CviJI RGCY 9 cut(s) 5, 77, 115, 134, 318, 451, 489, 524, 550
CviKI_1 RGCY 9 cut(s) 5, 77, 115, 134, 318, 451, 489, 524, 550
CviQI GTAC 2 cut(s) 181, 545
DdeI CTNAG 1 cut(s) 525
DpnI GATC 4 cut(s) 120, 187, 225, 273
DpnII GATC 4 cut(s) 118, 185, 223, 271
DraI TTTAAA 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Ecl136II GAGCTC 2 cut(s) 115, 489
Eco24I GRGCYC 2 cut(s) 117, 491
Eco31I GGTCTC 1 cut(s) 248
Eco53kI GAGCTC 2 cut(s) 115, 489
Eco72I CACGTG 1 cut(s) 162
Eco88I CYCGRG 2 cut(s) 78, 551
EcoICRI GAGCTC 2 cut(s) 115, 489
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 2 cut(s) 117, 491
Esp3I CGTCTC 2 cut(s) 75, 564
FaeI CATG 5 cut(s) 44, 174, 233, 312, 419
FaqI GGGAC 2 cut(s) 141, 424
FatI CATG 5 cut(s) 40, 170, 229, 308, 415
FauI CCCGC 1 cut(s) 258
FauNDI CATATG 1 cut(s) 341
Fnu4HI GCNGC 2 cut(s) 62, 540
FokI GGATG 6 cut(s) 16, 42, 120, 249, 517, 542
FriOI GRGCYC 2 cut(s) 117, 491
Fsp4HI GCNGC 2 cut(s) 62, 540
GlaI GCGC 1 cut(s) 430
GluI GCNGC 2 cut(s) 62, 540
HapII CCGG 2 cut(s) 189, 251
HgaI GACGC 2 cut(s) 421, 581
HhaI GCGC 1 cut(s) 431
Hin1II CATG 5 cut(s) 44, 174, 233, 312, 419
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 3 cut(s) 46, 192, 373
HpaII CCGG 2 cut(s) 189, 251
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 3 cut(s) 211, 236, 370
Hpy188III TCNNGA 4 cut(s) 80, 105, 189, 275
HpyAV CCTTC 2 cut(s) 467, 514
HpyCH4III ACNGT 2 cut(s) 259, 329
HpyCH4IV ACGT 2 cut(s) 161, 559
HpyCH4V TGCA 4 cut(s) 170, 312, 393, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 1 cut(s) 525
HpySE526I ACGT 2 cut(s) 161, 559
Hsp92II CATG 5 cut(s) 44, 174, 233, 312, 419
HspAI GCGC 1 cut(s) 429
Kpn2I TCCGGA 1 cut(s) 188
Kzo9I GATC 4 cut(s) 118, 185, 223, 271
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 4 cut(s) 30, 90, 202, 264
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 1 cut(s) 157
MaeII ACGT 2 cut(s) 161, 559
MalI GATC 4 cut(s) 120, 187, 225, 273
MbiI CCGCTC 1 cut(s) 265
MboI GATC 4 cut(s) 118, 185, 223, 271
MboII GAAGA 8 cut(s) 98, 218, 281, 284, 368, 371, 452, 482
MfeI CAATTG 1 cut(s) 202
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 2 cut(s) 117, 491
MluCI AATT 1 cut(s) 202
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 2 cut(s) 214, 348
MnlI CCTC 8 cut(s) 30, 85, 316, 455, 458, 495, 520, 547
Mph1103I ATGCAT 1 cut(s) 172
MroI TCCGGA 1 cut(s) 188
MseI TTAA 2 cut(s) 21, 72
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 2 cut(s) 189, 251
MspR9I CCNGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 421
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 251
NdeI CATATG 1 cut(s) 341
NdeII GATC 4 cut(s) 118, 185, 223, 271
NlaIII CATG 5 cut(s) 44, 174, 233, 312, 419
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 470
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 3 cut(s) 44, 174, 419
PaeI GCATGC 2 cut(s) 44, 174
PaeR7I CTCGAG 2 cut(s) 78, 551
PcsI WCGNNNNNNNCGW 2 cut(s) 497, 565
PctI GAATGC 1 cut(s) 421
PfeI GAWTC 2 cut(s) 192, 373
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 2 cut(s) 63, 541
PleI GAGTC 1 cut(s) 54
PmaCI CACGTG 1 cut(s) 162
PmlI CACGTG 1 cut(s) 162
PpsI GAGTC 1 cut(s) 54
Ppu21I YACGTR 2 cut(s) 162, 560
Psp124BI GAGCTC 2 cut(s) 117, 491
PspCI CACGTG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 551
PsuI RGATCY 1 cut(s) 185
RsaI GTAC 2 cut(s) 182, 546
RsaNI GTAC 2 cut(s) 181, 545
SacI GAGCTC 2 cut(s) 117, 491
SaqAI TTAA 2 cut(s) 21, 72
SatI GCNGC 2 cut(s) 62, 540
Sau3AI GATC 4 cut(s) 118, 185, 223, 271
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 2 cut(s) 117, 491
SetI ASST 9 cut(s) 19, 79, 96, 117, 136, 164, 491, 552, 562
SfaNI GCATC 1 cut(s) 157
Sfr274I CTCGAG 2 cut(s) 78, 551
SlaI CTCGAG 2 cut(s) 78, 551
SmlI CTYRAG 2 cut(s) 78, 551
SmoI CTYRAG 2 cut(s) 78, 551
SphI GCATGC 2 cut(s) 44, 174
Sse9I AATT 1 cut(s) 202
SsiI CCGC 8 cut(s) 59, 174, 265, 431, 494, 539, 542, 613
SstI GAGCTC 2 cut(s) 117, 491
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 259, 329
TaiI ACGT 2 cut(s) 164, 562
TaqI TCGA 4 cut(s) 79, 117, 500, 552
TasI AATT 1 cut(s) 202
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 2 cut(s) 192, 373
Tru1I TTAA 2 cut(s) 21, 72
Tru9I TTAA 2 cut(s) 21, 72
TseI GCWGC 1 cut(s) 61
TspDTI ATGAA 6 cut(s) 218, 328, 453, 521, 533, 578
TspGWI ACGGA 2 cut(s) 22, 198
XceI RCATGY 3 cut(s) 44, 174, 419
XhoI CTCGAG 2 cut(s) 78, 551
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.