AT5G43520

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011773
Physical Location & Seq
Reverse (-)
17485231 .. 17486309
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43520.1

Sequence Viewer

Length: 753 bp
ATGGCTTCAAGAAAACCAAAGGCCAAACCGGTTAATCGCCAATCTGTGAGGCACCCAAGTCACAACCATCCGCTGCGTGTCTTTAAAGCCAAAGAAGAGGATGAGACCGCATGCTCTGGCTGCGAGCTAGAGCTGACCGGGCAAGCTTTCAAATGTATAAAGTCAGAGTGCGATTACTTCTTACACAAGTCATGTTTCGACCTTCCTAGTGAGACCAATAACAAGTCTCACCAGGACCACCCTCTGACCTTGCTTCATTCCCCACCAGATGATCGGTCTGTCTACACGTGTGACGCGTGTGACCAATACGGATCTGGATTTTCTTACCATTGCTCAAACTGCAACTACAGTCTTCATGTGGGATGTGCGTTTATCCCTGAAACCGTAGATCGTGAAGATCATGAACATCCACTCACTCTTCTTTATTGCACACCGTGTAAAGGACGTGAAGACACGTACTTCACTTGCAGCGCTTGTGATGAAACTATTTCAGAAGATCTATGGATGTATTACTGTAAGGATTGTGACTATGGAACACATCTACACTCATGTGCGGCATATGAAGACCAAGGGAAAGAAGAAGAAGATGAAGACGAAGAAGGAGAAGCGAGTTCTCCAGCTTCTAGGATAAAGTCGTTGATGAAGGCGCAAGACGAGATGGCGGCTATGCAGCTAGAGGCACGTATTGAGAATGATGCGAGGAATGCTGCACTTGATCTGTGGGATGAACCAAAACGTAGATACTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

250

Amino Acids

28.65

Weight (kDa)

4.97

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 19 - 65 1e-08 C1 domain
C1_2 PF03107 75 - 123 1.1e-11 C1 domain
C1_2 PF03107 134 - 185 7.4e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17740 AT2G28270 AT2G44370 AT2G44380 AT2G44390 AT5G40590 AT5G43520
fragaria_vesca FvH4_7g00120
malus_domestica MD07G1002100.v1.1
prunus_persica Prupe.2G003600_v2.0.a1
pyrus_communis pycom02g26720
rosa_chinensis RchiOBHm_Chr1g0313371
rosa_multiflora Rmu_sc0000035.1_g000026
rosa_roxburghii Rroxscaffold_4G00332240
rosa_samantha Rh1AG003000 Rh1BG000100 Rh1CG001500 Rh1DG003000
rosa_wichuraiana Rw1G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 282
AccII CGCG 1 cut(s) 296
AciI CCGC 4 cut(s) 71, 108, 554, 662
AclWI GGATC 1 cut(s) 319
AcvI CACGTG 1 cut(s) 288
AdeI CACNNNGTG 1 cut(s) 435
AfaI GTAC 1 cut(s) 458
AfeI AGCGCT 1 cut(s) 472
AfiI CCNNNNNNNGG 1 cut(s) 440
AflIII ACRYGT 4 cut(s) 285, 287, 294, 453
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 9, 151
AjiI CACGTC 1 cut(s) 446
AjnI CCWGG 1 cut(s) 231
AleI CACNNNNGTG 1 cut(s) 549
AluBI AGCT 5 cut(s) 127, 133, 146, 620, 673
AluI AGCT 5 cut(s) 127, 133, 146, 620, 673
Alw26I GTCTC 3 cut(s) 98, 206, 231
AlwI GGATC 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 472
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 5 cut(s) 73, 120, 468, 670, 707
AsiGI ACCGGT 1 cut(s) 28
AspLEI GCGC 2 cut(s) 473, 649
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 221
AvaII GGWCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 51
BbrPI CACGTG 1 cut(s) 288
BbsI GAAGAC 4 cut(s) 344, 456, 570, 597
BbvI GCAGC 5 cut(s) 60, 107, 480, 682, 694
BccI CCATC 2 cut(s) 75, 652
BciT130I CCWGG 1 cut(s) 233
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 3 cut(s) 98, 206, 231
BfaI CTAG 4 cut(s) 128, 207, 624, 674
BfmI CTRYAG 1 cut(s) 346
BfoI RGCGCY 1 cut(s) 474
BglII AGATCT 1 cut(s) 496
BisI GCNGC 7 cut(s) 74, 121, 469, 555, 663, 671, 708
BlsI GCNGC 7 cut(s) 75, 122, 470, 556, 664, 672, 709
Bme1390I CCNGG 2 cut(s) 139, 233
Bme18I GGWCC 1 cut(s) 235
BmgBI CACGTC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 2 cut(s) 139, 233
BmsI GCATC 1 cut(s) 685
BpiI GAAGAC 4 cut(s) 344, 456, 570, 597
BpmI CTGGAG 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 139
BsaAI YACGTR 3 cut(s) 288, 456, 683
BsaI GGTCTC 2 cut(s) 98, 206
BsaJI CCNNGG 1 cut(s) 568
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse118I RCCGGY 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 6 cut(s) 67, 106, 368, 406, 510, 730
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMI GCAATG 1 cut(s) 328
BseXI GCAGC 5 cut(s) 60, 107, 480, 682, 694
BsgI GTGCAG 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 51
BshTI ACCGGT 1 cut(s) 28
BsiSI CCGG 2 cut(s) 29, 138
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 3 cut(s) 98, 206, 231
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 2 cut(s) 98, 206
Bsp143I GATC 6 cut(s) 271, 311, 388, 397, 496, 715
BspACI CCGC 4 cut(s) 71, 108, 554, 662
BspANI GGCC 1 cut(s) 23
BspFNI CGCG 1 cut(s) 296
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 319
BspT107I GGYRCC 1 cut(s) 51
BspTNI GGTCTC 2 cut(s) 98, 206
BsrDI GCAATG 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 568
BssMI GATC 6 cut(s) 271, 311, 388, 397, 496, 715
BssT1I CCWWGG 1 cut(s) 568
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 4 cut(s) 350, 385, 435, 515
Bst6I CTCTTC 2 cut(s) 90, 423
BstBAI YACGTR 3 cut(s) 288, 456, 683
BstC8I GCNNGC 3 cut(s) 112, 125, 144
BstF5I GGATG 6 cut(s) 67, 106, 368, 406, 510, 730
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 2 cut(s) 473, 649
BstKTI GATC 6 cut(s) 274, 314, 391, 400, 499, 718
BstMAI GTCTC 3 cut(s) 98, 206, 231
BstMBI GATC 6 cut(s) 271, 311, 388, 397, 496, 715
BstMWI GCNNNNNNNGC 4 cut(s) 120, 139, 339, 704
BstNI CCWGG 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 137, 231
BstSFI CTRYAG 1 cut(s) 346
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 5 cut(s) 60, 107, 480, 682, 694
BstV2I GAAGAC 4 cut(s) 344, 456, 570, 597
BstX2I RGATCY 2 cut(s) 311, 496
BstYI RGATCY 2 cut(s) 311, 496
BsuRI GGCC 1 cut(s) 23
BtrI CACGTC 1 cut(s) 446
BtsCI GGATG 6 cut(s) 67, 106, 368, 406, 510, 730
Cac8I GCNNGC 3 cut(s) 112, 125, 144
CciI TCATGA 1 cut(s) 400
CfoI GCGC 2 cut(s) 473, 649
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 457
CspAI ACCGGT 1 cut(s) 28
CviAII CATG 5 cut(s) 111, 192, 356, 401, 549
CviQI GTAC 1 cut(s) 457
DpnI GATC 6 cut(s) 273, 313, 390, 399, 498, 717
DpnII GATC 6 cut(s) 271, 311, 388, 397, 496, 715
DraI TTTAAA 1 cut(s) 85
DraIII CACNNNGTG 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 90, 423
EarI CTCTTC 2 cut(s) 90, 423
Eco130I CCWWGG 1 cut(s) 568
Eco31I GGTCTC 2 cut(s) 98, 206
Eco47I GGWCC 1 cut(s) 235
Eco47III AGCGCT 1 cut(s) 472
Eco72I CACGTG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 5 cut(s) 114, 195, 359, 404, 552
FatI CATG 5 cut(s) 110, 191, 355, 400, 548
FauNDI CATATG 1 cut(s) 559
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 7 cut(s) 74, 121, 469, 555, 663, 671, 708
FokI GGATG 6 cut(s) 54, 113, 375, 393, 517, 737
Fsp4HI GCNGC 7 cut(s) 74, 121, 469, 555, 663, 671, 708
FspBI CTAG 4 cut(s) 128, 207, 624, 674
GlaI GCGC 2 cut(s) 472, 648
GluI GCNGC 7 cut(s) 74, 121, 469, 555, 663, 671, 708
GsuI CTGGAG 1 cut(s) 600
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 1 cut(s) 23
HapII CCGG 2 cut(s) 29, 138
HgaI GACGC 1 cut(s) 302
HhaI GCGC 2 cut(s) 473, 649
Hin1II CATG 5 cut(s) 114, 195, 359, 404, 552
Hin6I GCGC 2 cut(s) 471, 647
HinP1I GCGC 2 cut(s) 471, 647
HindIII AAGCTT 1 cut(s) 144
HpaII CCGG 2 cut(s) 29, 138
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 166, 246, 493
Hpy188III TCNNGA 4 cut(s) 9, 315, 392, 401
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 212, 593, 637
HpyCH4III ACNGT 4 cut(s) 350, 385, 435, 515
HpyCH4IV ACGT 5 cut(s) 287, 445, 455, 682, 736
HpyCH4V TGCA 5 cut(s) 342, 429, 468, 670, 710
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 139, 339, 704
HpySE526I ACGT 5 cut(s) 287, 445, 455, 682, 736
Hsp92II CATG 5 cut(s) 114, 195, 359, 404, 552
HspAI GCGC 2 cut(s) 471, 647
Kzo9I GATC 6 cut(s) 271, 311, 388, 397, 496, 715
LpnPI CCDG 9 cut(s) 42, 102, 151, 218, 245, 279, 300, 390, 630
Lsp1109I GCAGC 5 cut(s) 60, 107, 480, 682, 694
LweI GCATC 1 cut(s) 685
MaeI CTAG 4 cut(s) 128, 207, 624, 674
MaeII ACGT 5 cut(s) 287, 445, 455, 682, 736
MaeIII GTNAC 4 cut(s) 59, 290, 299, 524
MalI GATC 6 cut(s) 273, 313, 390, 399, 498, 717
MboI GATC 6 cut(s) 271, 311, 388, 397, 496, 715
MflI RGATCY 2 cut(s) 311, 496
MluI ACGCGT 1 cut(s) 294
MnlI CCTC 5 cut(s) 42, 91, 252, 670, 693
MseI TTAA 2 cut(s) 33, 84
MslI CAYNNNNRTG 1 cut(s) 549
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 2 cut(s) 29, 138
MspR9I CCNGG 2 cut(s) 139, 233
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 4 cut(s) 120, 139, 339, 704
NciI CCSGG 1 cut(s) 139
NdeI CATATG 1 cut(s) 559
NdeII GATC 6 cut(s) 271, 311, 388, 397, 496, 715
NlaIII CATG 5 cut(s) 114, 195, 359, 404, 552
NlaIV GGNNCC 1 cut(s) 53
NmuCI GTSAC 4 cut(s) 59, 290, 299, 524
NspI RCATGY 1 cut(s) 114
OliI CACNNNNGTG 1 cut(s) 549
PaeI GCATGC 1 cut(s) 114
PagI TCATGA 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PctI GAATGC 1 cut(s) 709
PinAI ACCGGT 1 cut(s) 28
PkrI GCNGC 7 cut(s) 75, 122, 470, 556, 664, 672, 709
PmaCI CACGTG 1 cut(s) 288
PmlI CACGTG 1 cut(s) 288
Ppu21I YACGTR 3 cut(s) 288, 456, 683
Psp6I CCWGG 1 cut(s) 231
PspCI CACGTG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 235
PsuI RGATCY 2 cut(s) 311, 496
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 549
SaqAI TTAA 2 cut(s) 33, 84
SatI GCNGC 7 cut(s) 74, 121, 469, 555, 663, 671, 708
Sau3AI GATC 6 cut(s) 271, 311, 388, 397, 496, 715
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 139, 233
SfaNI GCATC 1 cut(s) 685
SfcI CTRYAG 1 cut(s) 346
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 549
SphI GCATGC 1 cut(s) 114
SsiI CCGC 4 cut(s) 71, 108, 554, 662
SspMI CTAG 4 cut(s) 128, 207, 624, 674
StyD4I CCNGG 2 cut(s) 137, 231
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 4 cut(s) 350, 385, 435, 515
TaiI ACGT 5 cut(s) 290, 448, 458, 685, 739
TaqI TCGA 1 cut(s) 198
TaqII GACCGA 1 cut(s) 264
TauI GCSGC 2 cut(s) 557, 665
Tru1I TTAA 2 cut(s) 33, 84
Tru9I TTAA 2 cut(s) 33, 84
TseFI GTSAC 4 cut(s) 59, 290, 299, 524
TseI GCWGC 5 cut(s) 73, 120, 468, 670, 707
Tsp45I GTSAC 4 cut(s) 59, 290, 299, 524
TspDTI ATGAA 8 cut(s) 245, 344, 417, 495, 576, 603, 656, 741
TspGWI ACGGA 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 235
XceI RCATGY 1 cut(s) 114
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 282
XspI CTAG 4 cut(s) 128, 207, 624, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.