AT2G44380

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011773
Physical Location & Seq
Reverse (-)
18323366 .. 18324561
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44380.1

Sequence Viewer

Length: 744 bp
ATGGCTTCAAGAAAACCTGTTAATCGCCCATCCGTGAGGCACGCGAGTCACAACCATCCGCTGCGTGTCTTTAAAGCTCGAGACGAAGATGAGGTCGTTTGCTCTGGATGCGAGCTCGAGCTAACCGGACAAGCTTTCAAGTGTATGAAGTCAGATTGTGATTACTTCTTGCACAAGTCATGTTTCGACCTACCTCGTGAAACCAATCACAAGTCTCACCCAAACCACTCTTTGACCCTGCTTCATTCCCCACCGTACGGTCAGTCTTACACATGCGACGCATGCGGTGAGTACGGATCTGGTTTCACTTACAATTGTTCTGAATGTCAATATGATGTTCATGTCGGATGTGCTTTTATCCCTGAGACCGTGGAGCGCGAAGATCACGAACACCCACTCACGCTTCTCTACAACACACCATGCAAAGGTCGTGAGGACGGTGCTAAGTTCATATGTGATGTTTGTGAAGAAAAAATGTCGGAAAATCTTTGGGTTTATTACTGCAAAGAGTGTGATTATGGGACGCATGTGCATTCTTGCGCGGTCTATGAAGATCATGAGTCAGAGAAAAGAGGAGGAGGTAGGGAAGAAGGAGAAGCGAGCTCTGCGGTTTCAAGGATGAAATCGTTGATGAAGGCTCAAGATGAGATGGCGGCGTTACAGCTCGAGGCACGTATTAGAAACGACACTAATAATGCTATACTCGATTTATGGGATAGTCCAAAGCGGAGATATTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

247

Amino Acids

28.27

Weight (kDa)

5.68

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 16 - 61 3.7e-08 C1 domain
C1_2 PF03107 71 - 118 1.7e-12 C1 domain
C1_2 PF03107 129 - 180 2.2e-09 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17740 AT2G28270 AT2G44370 AT2G44380 AT2G44390 AT5G40590 AT5G43520
fragaria_vesca FvH4_7g00120
malus_domestica MD07G1002100.v1.1
prunus_persica Prupe.2G003600_v2.0.a1
pyrus_communis pycom02g26720
rosa_chinensis RchiOBHm_Chr1g0313371
rosa_multiflora Rmu_sc0000035.1_g000026
rosa_roxburghii Rroxscaffold_4G00332240
rosa_samantha Rh1AG003000 Rh1BG000100 Rh1CG001500 Rh1DG003000
rosa_wichuraiana Rw1G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 44, 378, 542
AciI CCGC 6 cut(s) 59, 285, 542, 608, 653, 727
AclWI GGATC 1 cut(s) 304
AfaI GTAC 2 cut(s) 257, 293
AfiI CCNNNNNNNGG 2 cut(s) 257, 425
AgsI TTSAA 3 cut(s) 9, 139, 615
AluBI AGCT 6 cut(s) 77, 115, 121, 134, 603, 664
AluI AGCT 6 cut(s) 77, 115, 121, 134, 603, 664
Alw21I GWGCWC 2 cut(s) 117, 605
Alw26I GTCTC 3 cut(s) 75, 219, 359
AlwI GGATC 1 cut(s) 304
Ama87I CYCGRG 3 cut(s) 78, 116, 665
ApeKI GCWGC 1 cut(s) 61
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AspLEI GCGC 2 cut(s) 378, 542
AsuHPI GGTGA 2 cut(s) 209, 299
AvaI CYCGRG 3 cut(s) 78, 116, 665
BanII GRGCYC 2 cut(s) 117, 605
BauI CACGAG 1 cut(s) 195
Bbv12I GWGCWC 2 cut(s) 117, 605
BbvI GCAGC 1 cut(s) 48
BccI CCATC 3 cut(s) 37, 63, 643
BcoDI GTCTC 3 cut(s) 75, 219, 359
BisI GCNGC 2 cut(s) 62, 654
BlsI GCNGC 2 cut(s) 63, 655
BmeT110I CYCGRG 3 cut(s) 78, 116, 665
BmsI GCATC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 624
BsaAI YACGTR 1 cut(s) 674
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 425
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 5 cut(s) 29, 55, 113, 353, 624
BseLI CCNNNNNNNGG 2 cut(s) 257, 425
BseMII CTCAG 1 cut(s) 354
BseRI GAGGAG 2 cut(s) 588, 591
BseXI GCAGC 1 cut(s) 48
Bsh1236I CGCG 3 cut(s) 44, 378, 542
BsiHKAI GWGCWC 2 cut(s) 117, 605
BsiHKCI CYCGRG 3 cut(s) 78, 116, 665
BsiSI CCGG 1 cut(s) 126
BsiWI CGTACG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 2 cut(s) 257, 425
BsmAI GTCTC 3 cut(s) 75, 219, 359
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 535
BsmI GAATGC 1 cut(s) 532
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 3 cut(s) 78, 116, 665
Bsp1286I GDGCHC 2 cut(s) 117, 605
Bsp143I GATC 3 cut(s) 296, 382, 553
BspACI CCGC 6 cut(s) 59, 285, 542, 608, 653, 727
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 3 cut(s) 44, 378, 542
BspHI TCATGA 1 cut(s) 556
BspPI GGATC 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 3 cut(s) 296, 382, 553
BssSI CACGAG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 195
Bst4CI ACNGT 4 cut(s) 255, 260, 370, 440
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 4 cut(s) 42, 113, 283, 601
BstDEI CTNAG 2 cut(s) 363, 444
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 5 cut(s) 29, 55, 113, 353, 624
BstFNI CGCG 3 cut(s) 44, 378, 542
BstHHI GCGC 2 cut(s) 378, 542
BstKTI GATC 3 cut(s) 299, 385, 556
BstMAI GTCTC 3 cut(s) 75, 219, 359
BstMBI GATC 3 cut(s) 296, 382, 553
BstMWI GCNNNNNNNGC 3 cut(s) 108, 282, 605
BstNSI RCATGY 3 cut(s) 276, 285, 530
BstUI CGCG 3 cut(s) 44, 378, 542
BstV1I GCAGC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 5 cut(s) 29, 55, 113, 353, 624
Cac8I GCNNGC 4 cut(s) 42, 113, 283, 601
CciI TCATGA 1 cut(s) 556
CfoI GCGC 2 cut(s) 378, 542
CseI GACGC 2 cut(s) 287, 532
Csp6I GTAC 2 cut(s) 256, 292
CviAII CATG 7 cut(s) 180, 273, 282, 341, 420, 527, 557
CviJI RGCY 8 cut(s) 5, 77, 115, 121, 134, 603, 638, 664
CviKI_1 RGCY 8 cut(s) 5, 77, 115, 121, 134, 603, 638, 664
CviQI GTAC 2 cut(s) 256, 292
DdeI CTNAG 2 cut(s) 363, 444
DpnI GATC 3 cut(s) 298, 384, 555
DpnII GATC 3 cut(s) 296, 382, 553
DraI TTTAAA 1 cut(s) 73
Ecl136II GAGCTC 2 cut(s) 115, 603
Eco24I GRGCYC 2 cut(s) 117, 605
Eco31I GGTCTC 1 cut(s) 359
Eco53kI GAGCTC 2 cut(s) 115, 603
Eco88I CYCGRG 3 cut(s) 78, 116, 665
EcoICRI GAGCTC 2 cut(s) 115, 603
EcoT38I GRGCYC 2 cut(s) 117, 605
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 7 cut(s) 183, 276, 285, 344, 423, 530, 560
FaqI GGGAC 1 cut(s) 535
FatI CATG 7 cut(s) 179, 272, 281, 340, 419, 526, 556
FauNDI CATATG 1 cut(s) 452
Fnu4HI GCNGC 2 cut(s) 62, 654
FokI GGATG 5 cut(s) 16, 42, 120, 360, 631
FriOI GRGCYC 2 cut(s) 117, 605
Fsp4HI GCNGC 2 cut(s) 62, 654
GlaI GCGC 2 cut(s) 377, 541
GluI GCNGC 2 cut(s) 62, 654
HapII CCGG 1 cut(s) 126
HgaI GACGC 2 cut(s) 287, 532
HhaI GCGC 2 cut(s) 378, 542
Hin1II CATG 7 cut(s) 183, 276, 285, 344, 423, 530, 560
Hin6I GCGC 2 cut(s) 376, 540
HinP1I GCGC 2 cut(s) 376, 540
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 2 cut(s) 46, 560
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 209, 299
Hpy188I TCNGA 5 cut(s) 154, 322, 347, 481, 565
Hpy188III TCNNGA 8 cut(s) 9, 80, 105, 197, 386, 431, 557, 641
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 584, 628
HpyCH4III ACNGT 4 cut(s) 255, 260, 370, 440
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 4 cut(s) 172, 423, 504, 532
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 282, 605
HpyF3I CTNAG 2 cut(s) 363, 444
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 7 cut(s) 183, 276, 285, 344, 423, 530, 560
HspAI GCGC 2 cut(s) 376, 540
Kzo9I GATC 3 cut(s) 296, 382, 553
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 6 cut(s) 30, 90, 139, 251, 285, 375
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 1 cut(s) 98
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 2 cut(s) 47, 657
MalI GATC 3 cut(s) 298, 384, 555
MboI GATC 3 cut(s) 296, 382, 553
MboII GAAGA 5 cut(s) 98, 392, 479, 563, 599
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 2 cut(s) 117, 605
MluCI AATT 1 cut(s) 313
MlyI GAGTC 2 cut(s) 55, 569
MmeI TCCRAC 2 cut(s) 325, 459
MnlI CCTC 8 cut(s) 30, 85, 204, 427, 566, 569, 572, 661
MseI TTAA 2 cut(s) 21, 72
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 313
Mva1269I GAATGC 1 cut(s) 532
MvnI CGCG 3 cut(s) 44, 378, 542
MwoI GCNNNNNNNGC 3 cut(s) 108, 282, 605
NdeI CATATG 1 cut(s) 452
NdeII GATC 3 cut(s) 296, 382, 553
NlaIII CATG 7 cut(s) 183, 276, 285, 344, 423, 530, 560
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 3 cut(s) 276, 285, 530
PaeI GCATGC 1 cut(s) 285
PaeR7I CTCGAG 3 cut(s) 78, 116, 665
PagI TCATGA 1 cut(s) 556
PctI GAATGC 1 cut(s) 532
Pfl23II CGTACG 1 cut(s) 255
PkrI GCNGC 2 cut(s) 63, 655
PleI GAGTC 2 cut(s) 54, 568
PpsI GAGTC 2 cut(s) 54, 568
Ppu21I YACGTR 1 cut(s) 674
Psp124BI GAGCTC 2 cut(s) 117, 605
PspLI CGTACG 1 cut(s) 255
PspXI VCTCGAGB 2 cut(s) 116, 665
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 2 cut(s) 257, 293
RsaNI GTAC 2 cut(s) 256, 292
SacI GAGCTC 2 cut(s) 117, 605
SaqAI TTAA 2 cut(s) 21, 72
SatI GCNGC 2 cut(s) 62, 654
Sau3AI GATC 3 cut(s) 296, 382, 553
SchI GAGTC 2 cut(s) 55, 569
SduI GDGCHC 2 cut(s) 117, 605
SfaNI GCATC 1 cut(s) 98
Sfr274I CTCGAG 3 cut(s) 78, 116, 665
SlaI CTCGAG 3 cut(s) 78, 116, 665
SmlI CTYRAG 4 cut(s) 78, 116, 639, 665
SmoI CTYRAG 4 cut(s) 78, 116, 639, 665
SphI GCATGC 1 cut(s) 285
Sse9I AATT 1 cut(s) 313
SsiI CCGC 6 cut(s) 59, 285, 542, 608, 653, 727
SstI GAGCTC 2 cut(s) 117, 605
TaaI ACNGT 4 cut(s) 255, 260, 370, 440
TaiI ACGT 1 cut(s) 676
TaqI TCGA 5 cut(s) 79, 117, 186, 666, 705
TasI AATT 1 cut(s) 313
TauI GCSGC 1 cut(s) 656
Tru1I TTAA 2 cut(s) 21, 72
Tru9I TTAA 2 cut(s) 21, 72
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 7 cut(s) 161, 233, 329, 439, 564, 635, 647
TspGWI ACGGA 2 cut(s) 22, 309
XceI RCATGY 3 cut(s) 276, 285, 530
XhoI CTCGAG 3 cut(s) 78, 116, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.