AT2G18030

peptide methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007363
Physical Location & Seq
Forward (+)
7840037 .. 7841823
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18030.1

Sequence Viewer

Length: 765 bp
ATGGCTATATCACTGAAGAGGAACCGTTTCTTCATTCCTTATACGAATCTCGTCTTCTTCTTCTTCTTGTGTGTCTCTCTGCTCGATAAAACTGTATCCATCAGGATTTCGAATCAGATCTCGGATACTGTCGTTGATTCTCCCGATCGTCCTTTGAAATCTGCGGTTTTCGCTCTTGGAAGCTTCTGGAGATCGGAGGCGGCGTTTGGTTGTATCAATGGCGTCGTACGAACCTCCGCCGGTTACGCCGGTGGAACGAAGACGAATCCGGAGTATAGGAACTTAGGTGATCACGCCGAGTCCGTACAGGTTGAATATGATCCAAGGATAATTGGTTATCGTCAGCTCTTAGATGTATTTTGGTCTAGTCATGATTCTAGACAAGTGTTTGGACAAGGTCCTGATGTGGGTAATCAATACAGATCCTGTATTTTCACTAATTCTACAGAAGAATTGAGACTGGCTTCTACCAGCAAAGAAAGGGAGCAACTTAATACAAGAAGCAGTATCGTGACCACTCAAATTCAACAGCTAGGAACGTTTTATCGCGCAGAGCCTGATCACCAGAAGTTCGAGCTGAAACAACATCCATTTCTTATTCAGCTAATTGGAAACATGGTAGAAGAAGAGCTTGAGAGATCAGCTCTAGCCACAAAACTAAACGGTTACGCAGCCGAGCTCTGCCCGCCTAGAATCCAGAAACATATCGACTCTAGAGTTAATGAGATCATTAGAAAAGGTTGGCCCGTCTTGAGAGACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

254

Amino Acids

28.93

Weight (kDa)

8.32

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 55 - 195 6.3e-43 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 549
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 4 cut(s) 164, 200, 237, 686
AclI AACGTT 1 cut(s) 539
AclWI GGATC 2 cut(s) 314, 417
AcsI RAATTY 1 cut(s) 522
AcuI CTGAAG 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 228, 306
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 3 cut(s) 157, 314, 527
AluBI AGCT 8 cut(s) 183, 346, 532, 577, 604, 631, 644, 679
AluI AGCT 8 cut(s) 183, 346, 532, 577, 604, 631, 644, 679
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 3 cut(s) 79, 451, 750
AlwI GGATC 2 cut(s) 314, 417
AlwNI CAGNNNCTG 2 cut(s) 426, 557
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 1 cut(s) 743
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 1 cut(s) 522
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 398, 744
AsuHPI GGTGA 2 cut(s) 299, 554
AsuII TTCGAA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 398
BaeI ACNNNNGTAYC 2 cut(s) 117, 150
BanII GRGCYC 1 cut(s) 681
BbsI GAAGAC 2 cut(s) 46, 266
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 1 cut(s) 683
BccI CCATC 1 cut(s) 107
BciVI GTATCC 2 cut(s) 106, 118
BclI TGATCA 2 cut(s) 289, 559
BcoDI GTCTC 3 cut(s) 79, 451, 750
BfaI CTAG 6 cut(s) 366, 378, 533, 647, 690, 714
BfmI CTRYAG 1 cut(s) 444
BfuI GTATCC 2 cut(s) 106, 118
BglII AGATCT 1 cut(s) 117
BisI GCNGC 2 cut(s) 201, 672
BlsI GCNGC 2 cut(s) 202, 673
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 398, 744
BmiI GGNNCC 1 cut(s) 23
BpiI GAAGAC 2 cut(s) 46, 266
BplI GAGNNNNNCTC 2 cut(s) 628, 660
BpmI CTGGAG 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 653
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 323
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse118I RCCGGY 2 cut(s) 239, 248
Bse1I ACTGG 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 683
Bsh1236I CGCG 1 cut(s) 549
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 1 cut(s) 745
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 681
BsiSI CCGG 3 cut(s) 240, 249, 269
BsiWI CGTACG 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 3 cut(s) 79, 451, 750
BsnI GGCC 1 cut(s) 745
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 681
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 9 cut(s) 117, 145, 191, 289, 319, 422, 559, 638, 726
BspACI CCGC 4 cut(s) 164, 200, 237, 686
BspANI GGCC 1 cut(s) 745
BspEI TCCGGA 1 cut(s) 268
BspFNI CGCG 1 cut(s) 549
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 23
BspPI GGATC 2 cut(s) 314, 417
BspQI GCTCTTC 1 cut(s) 621
BspT104I TTCGAA 1 cut(s) 110
BsrFI RCCGGY 2 cut(s) 239, 248
BsrI ACTGG 1 cut(s) 465
BssAI RCCGGY 2 cut(s) 239, 248
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 9 cut(s) 117, 145, 191, 289, 319, 422, 559, 638, 726
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 323
Bst4CI ACNGT 4 cut(s) 26, 94, 130, 665
Bst6I CTCTTC 2 cut(s) 11, 621
BstACI GRCGYC 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 2 cut(s) 283, 349
BstF5I GGATG 1 cut(s) 586
BstFNI CGCG 1 cut(s) 549
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 9 cut(s) 120, 148, 194, 292, 322, 425, 562, 641, 729
BstMAI GTCTC 3 cut(s) 79, 451, 750
BstMBI GATC 9 cut(s) 117, 145, 191, 289, 319, 422, 559, 638, 726
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 170, 245, 685
BstSFI CTRYAG 1 cut(s) 444
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 1 cut(s) 683
BstV2I GAAGAC 2 cut(s) 46, 266
BstX2I RGATCY 2 cut(s) 117, 422
BstYI RGATCY 2 cut(s) 117, 422
BsuI GTATCC 2 cut(s) 106, 118
BsuRI GGCC 1 cut(s) 745
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 686
CaiI CAGNNNCTG 2 cut(s) 426, 557
CciI TCATGA 1 cut(s) 370
CfoI GCGC 1 cut(s) 551
Cfr10I RCCGGY 2 cut(s) 239, 248
Cfr13I GGNCC 2 cut(s) 398, 744
CseI GACGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 227, 305
CviAII CATG 2 cut(s) 371, 616
CviQI GTAC 2 cut(s) 227, 305
DdeI CTNAG 2 cut(s) 283, 349
DpnI GATC 9 cut(s) 119, 147, 193, 291, 321, 424, 561, 640, 728
DpnII GATC 9 cut(s) 117, 145, 191, 289, 319, 422, 559, 638, 726
Eam1104I CTCTTC 2 cut(s) 11, 621
EarI CTCTTC 2 cut(s) 11, 621
EciI GGCGGA 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 679
EcoO109I RGGNCCY 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 2 cut(s) 374, 619
FaiI YATR 7 cut(s) 8, 42, 276, 318, 372, 617, 705
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FatI CATG 2 cut(s) 370, 615
FauI CCCGC 1 cut(s) 693
FbaI TGATCA 2 cut(s) 289, 559
Fnu4HI GCNGC 2 cut(s) 201, 672
FokI GGATG 1 cut(s) 573
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 2 cut(s) 201, 672
FspBI CTAG 6 cut(s) 366, 378, 533, 647, 690, 714
GlaI GCGC 1 cut(s) 550
GluI GCNGC 2 cut(s) 201, 672
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 1 cut(s) 745
HapII CCGG 3 cut(s) 240, 249, 269
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 551
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 2 cut(s) 374, 619
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 8 cut(s) 46, 112, 137, 265, 299, 374, 693, 710
HpaII CCGG 3 cut(s) 240, 249, 269
HphI GGTGA 2 cut(s) 299, 554
Hpy188I TCNGA 3 cut(s) 117, 124, 196
Hpy99I CGWCG 1 cut(s) 227
HpyCH4III ACNGT 4 cut(s) 26, 94, 130, 665
HpyCH4IV ACGT 1 cut(s) 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 245, 685
HpyF3I CTNAG 2 cut(s) 283, 349
HpySE526I ACGT 1 cut(s) 539
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 2 cut(s) 374, 619
HspAI GCGC 1 cut(s) 549
Kpn2I TCCGGA 1 cut(s) 268
Ksp22I TGATCA 2 cut(s) 289, 559
Kzo9I GATC 9 cut(s) 117, 145, 191, 289, 319, 422, 559, 638, 726
LguI GCTCTTC 1 cut(s) 621
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 1 cut(s) 683
MaeI CTAG 6 cut(s) 366, 378, 533, 647, 690, 714
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 3 cut(s) 242, 511, 665
MalI GATC 9 cut(s) 119, 147, 193, 291, 321, 424, 561, 640, 728
MboI GATC 9 cut(s) 117, 145, 191, 289, 319, 422, 559, 638, 726
MflI RGATCY 2 cut(s) 117, 422
MhlI GDGCHC 1 cut(s) 681
MluCI AATT 5 cut(s) 330, 439, 452, 522, 606
MlyI GAGTC 2 cut(s) 308, 704
MnlI CCTC 3 cut(s) 12, 190, 244
MroI TCCGGA 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 2 cut(s) 492, 720
MspI CCGG 3 cut(s) 240, 249, 269
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 3 cut(s) 170, 245, 685
NdeII GATC 9 cut(s) 117, 145, 191, 289, 319, 422, 559, 638, 726
NlaIII CATG 2 cut(s) 374, 619
NlaIV GGNNCC 1 cut(s) 23
NmeAIII GCCGAG 2 cut(s) 322, 700
NmuCI GTSAC 1 cut(s) 511
NspV TTCGAA 1 cut(s) 110
PagI TCATGA 1 cut(s) 370
PciSI GCTCTTC 1 cut(s) 621
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 300
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 6 cut(s) 46, 112, 137, 265, 374, 693
Pfl23II CGTACG 1 cut(s) 226
PflFI GACNNNGTC 1 cut(s) 396
PkrI GCNGC 2 cut(s) 202, 673
Ple19I CGATCG 1 cut(s) 148
PleI GAGTC 2 cut(s) 307, 704
PpsI GAGTC 2 cut(s) 307, 704
PpuMI RGGWCCY 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 681
Psp1406I AACGTT 1 cut(s) 539
Psp5II RGGWCCY 1 cut(s) 398
PspLI CGTACG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 2 cut(s) 398, 744
PspPPI RGGWCCY 1 cut(s) 398
PstNI CAGNNNCTG 2 cut(s) 426, 557
PsuI RGATCY 2 cut(s) 117, 422
PsyI GACNNNGTC 1 cut(s) 396
PvuI CGATCG 1 cut(s) 148
RsaI GTAC 2 cut(s) 228, 306
RsaNI GTAC 2 cut(s) 227, 305
SacI GAGCTC 1 cut(s) 681
SapI GCTCTTC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 492, 720
SatI GCNGC 2 cut(s) 201, 672
Sau3AI GATC 9 cut(s) 117, 145, 191, 289, 319, 422, 559, 638, 726
Sau96I GGNCC 2 cut(s) 398, 744
SchI GAGTC 2 cut(s) 308, 704
SduI GDGCHC 1 cut(s) 681
SfcI CTRYAG 1 cut(s) 444
SfuI TTCGAA 1 cut(s) 110
SgrAI CRCCGGYG 1 cut(s) 248
SinI GGWCC 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 632, 751
SmoI CTYRAG 2 cut(s) 632, 751
Sse9I AATT 5 cut(s) 330, 439, 452, 522, 606
SsiI CCGC 4 cut(s) 164, 200, 237, 686
SspMI CTAG 6 cut(s) 366, 378, 533, 647, 690, 714
SstI GAGCTC 1 cut(s) 681
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 4 cut(s) 26, 94, 130, 665
TaiI ACGT 1 cut(s) 542
TaqI TCGA 4 cut(s) 84, 110, 573, 708
TasI AATT 5 cut(s) 330, 439, 452, 522, 606
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 6 cut(s) 46, 112, 137, 265, 374, 693
Tru1I TTAA 2 cut(s) 492, 720
Tru9I TTAA 2 cut(s) 492, 720
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 1 cut(s) 522
XbaI TCTAGA 2 cut(s) 377, 713
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 6 cut(s) 366, 378, 533, 647, 690, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.