Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0007363

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTATTATTTGCAGCAACATTTCCCTTAGGCGTGTATTAACAACGCTCGTGCTTATGACAATCCTAGCGGCTGAGAAAAGGGTGTGCATCCGGATCCCAGATCAGATCACTGAAACTACAAGGCTAGGGATCCACCCAACGACCAGCCCGCCTTTGAAATCAGCAGTTTTTGCTCTGGGTAGCTTTTGGAGGTCTGAAGCTGTGTTCGGGTGCTTGAATGGGGTTCTTCAGACCACTGTTGGTTATGCTGGAGGATCCAAAGCCAATCCTGAGTACAGAAGTTTGGGTGATCATGCCGAGTCTGTGCAGGTGGTATATGATGAAAGGCTAATCAGCTTCAGGCAACTTTTGGAGGTTTTCTGGTCTAGTCATGATTATAGACAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAATACAGATCTATCGTTTTTACGAATGGAACTGGAGAGTCTAGATTGGCTTCTGTAAACAGAGGGAGAGAGCAAACTAAGTCAAAGAGCAGCATTGTCACTACTCAAATCCAGCCACTTGGAACATTTTATCCTGCTGAGCCTGAACATCAGGTACAACTCAAGATCCTATACCTTTCTGCCCAAACTATAGTCTTAAGGAGGGAATTTTCAGTCAGATCATTTATTCTAAACATTTCTTATAGCATCAGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGTTGGTTTCTTTTATTCCTGGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

241

Amino Acids

26.6

Weight (kDa)

9.54

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18030 AT2G18030
fragaria_vesca	FvH4_6g24560 FvH4_6g24560 FvH4_6g24560
prunus_persica	Prupe.1G202800_v2.0.a1 Prupe.1G202800_v2.0.a1
pyrus_communis	pycom04g04120
rosa_chinensis	RchiOBHm_Chr0c32g0501631 RchiOBHm_Chr0c32g0501641 RchiOBHm_Chr3g0483661 RchiOBHm_Chr3g0483821
rosa_laevigata	RLG00000023260
rosa_multiflora	Rmu_co8365169.1_g000001 Rmu_sc0008673.1_g000006
rosa_roxburghii	Rroxscaffold_6G00398140
rosa_rugosa	Rorug03G0208100
rosa_samantha	Rh3AG256300 Rh3AG256900 Rh3BG293000 Rh3CG290800 Rh3DG286600
rosa_wichuraiana	Rw0G012010 Rw3G023150 Rw3G023210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
Acc36I	ACCTGC	1 cut(s)	301
AccIII	TCCGGA	1 cut(s)	93
AciI	CCGC	3 cut(s)	71, 152, 695
AclWI	GGATC	7 cut(s)	91, 104, 127, 140, 252, 265, 577
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	3 cut(s)	215, 219, 325
AfaI	GTAC	2 cut(s)	278, 573
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflII	CTTAAG	1 cut(s)	613
AgsI	TTSAA	2 cut(s)	160, 220
AjnI	CCWGG	1 cut(s)	714
AloI	GAACNNNNNNTCC	2 cut(s)	532, 564
AluBI	AGCT	3 cut(s)	186, 203, 339
AluI	AGCT	3 cut(s)	186, 203, 339
AlwI	GGATC	7 cut(s)	91, 104, 127, 140, 252, 265, 577
Aor13HI	TCCGGA	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	15, 507
ApoI	RAATTY	1 cut(s)	623
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	29
BamHI	GGATCC	3 cut(s)	96, 132, 257
BauI	CACGAG	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	27, 519
BciT130I	CCWGG	1 cut(s)	716
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	4 cut(s)	68, 128, 369, 459
BfmI	CTRYAG	1 cut(s)	606
BfrI	CTTAAG	1 cut(s)	613
BfuAI	ACCTGC	1 cut(s)	301
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	3 cut(s)	16, 72, 508
BlpI	GCTNAGC	1 cut(s)	555
BlsI	GCNGC	3 cut(s)	17, 73, 509
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	98, 134, 259
BmrFI	CCNGG	1 cut(s)	716
BmsI	GCATC	2 cut(s)	99, 672
BpmI	CTGGAG	2 cut(s)	273, 471
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	563
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	454
Bse21I	CCTNAGG	1 cut(s)	29
BseAI	TCCGGA	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	716
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	3 cut(s)	66, 264, 546
BseNI	ACTGG	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	27, 519
BsgI	GTGCAG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	410
Bsp13I	TCCGGA	1 cut(s)	93
Bsp143I	GATC	9 cut(s)	96, 103, 108, 132, 257, 292, 425, 582, 635
Bsp1720I	GCTNAGC	1 cut(s)	555
BspACI	CCGC	3 cut(s)	71, 152, 695
BspCNI	CTCAG	3 cut(s)	67, 265, 547
BspEI	TCCGGA	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	3 cut(s)	98, 134, 259
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	7 cut(s)	91, 104, 127, 140, 252, 265, 577
BspTI	CTTAAG	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	454
BssMI	GATC	9 cut(s)	96, 103, 108, 132, 257, 292, 425, 582, 635
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	1 cut(s)	241
BstAFI	CTTAAG	1 cut(s)	613
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	5 cut(s)	29, 75, 273, 495, 555
BstEII	GGTNACC	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	9 cut(s)	99, 106, 111, 135, 260, 295, 428, 585, 638
BstMBI	GATC	9 cut(s)	96, 103, 108, 132, 257, 292, 425, 582, 635
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	716
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	714
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	27, 519
BstX2I	RGATCY	5 cut(s)	96, 132, 257, 425, 582
BstXI	CCANNNNNNTGG	1 cut(s)	536
BstYI	RGATCY	5 cut(s)	96, 132, 257, 425, 582
Bsu36I	CCTNAGG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	111, 237
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	152
CciI	TCATGA	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	277, 572
CviAII	CATG	2 cut(s)	296, 374
CviQI	GTAC	2 cut(s)	277, 572
DdeI	CTNAG	5 cut(s)	29, 75, 273, 495, 555
DpnI	GATC	9 cut(s)	98, 105, 110, 134, 259, 294, 427, 584, 637
DpnII	GATC	9 cut(s)	96, 103, 108, 132, 257, 292, 425, 582, 635
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	3 cut(s)	215, 219, 325
Eco81I	CCTNAGG	1 cut(s)	29
Eco91I	GGTNACC	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	401
EcoO65I	GGTNACC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	714
FaeI	CATG	2 cut(s)	299, 377
FatI	CATG	2 cut(s)	295, 373
FauI	CCCGC	2 cut(s)	159, 688
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	16, 72, 508
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	16, 72, 508
FspBI	CTAG	4 cut(s)	68, 128, 369, 459
GluI	GCNGC	3 cut(s)	16, 72, 508
GsuI	CTGGAG	2 cut(s)	273, 471
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	2 cut(s)	299, 377
HinfI	GANTC	2 cut(s)	302, 455
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	4 cut(s)	108, 199, 234, 635
Hpy188III	TCNNGA	6 cut(s)	94, 272, 374, 404, 459, 580
Hpy8I	GTNNAC	1 cut(s)	475
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	15, 90, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	5 cut(s)	29, 75, 273, 495, 555
Hsp92II	CATG	2 cut(s)	299, 377
Kpn2I	TCCGGA	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	9 cut(s)	96, 103, 108, 132, 257, 292, 425, 582, 635
Lsp1109I	GCAGC	2 cut(s)	27, 519
LweI	GCATC	2 cut(s)	99, 672
MaeI	CTAG	4 cut(s)	68, 128, 369, 459
MaeIII	GTNAC	2 cut(s)	413, 514
MalI	GATC	9 cut(s)	98, 105, 110, 134, 259, 294, 427, 584, 637
MboI	GATC	9 cut(s)	96, 103, 108, 132, 257, 292, 425, 582, 635
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	5 cut(s)	96, 132, 257, 425, 582
MluCI	AATT	1 cut(s)	623
MlyI	GAGTC	2 cut(s)	311, 464
MnlI	CCTC	5 cut(s)	186, 248, 349, 473, 612
MroI	TCCGGA	1 cut(s)	93
MseI	TTAA	2 cut(s)	41, 614
MspCI	CTTAAG	1 cut(s)	613
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	716
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	9 cut(s)	96, 103, 108, 132, 257, 292, 425, 582, 635
NlaIII	CATG	2 cut(s)	299, 377
NlaIV	GGNNCC	3 cut(s)	98, 134, 259
NmeAIII	GCCGAG	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	514
PagI	TCATGA	1 cut(s)	373
PaqCI	CACCTGC	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	17, 73, 509
PleI	GAGTC	2 cut(s)	310, 463
PpsI	GAGTC	2 cut(s)	310, 463
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	714
PspEI	GGTNACC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	3 cut(s)	98, 134, 259
PspPI	GGNCC	1 cut(s)	401
PspPPI	RGGWCCY	1 cut(s)	401
PsrI	GAACNNNNNNTAC	2 cut(s)	555, 587
PsuI	RGATCY	5 cut(s)	96, 132, 257, 425, 582
RsaI	GTAC	2 cut(s)	278, 573
RsaNI	GTAC	2 cut(s)	277, 572
SaqAI	TTAA	2 cut(s)	41, 614
SatI	GCNGC	3 cut(s)	16, 72, 508
Sau3AI	GATC	9 cut(s)	96, 103, 108, 132, 257, 292, 425, 582, 635
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	2 cut(s)	311, 464
ScrFI	CCNGG	1 cut(s)	716
SetI	ASST	9 cut(s)	188, 197, 205, 315, 341, 360, 403, 573, 594
SfaNI	GCATC	2 cut(s)	99, 672
SfcI	CTRYAG	1 cut(s)	606
SinI	GGWCC	1 cut(s)	401
SmlI	CTYRAG	2 cut(s)	578, 613
SmoI	CTYRAG	2 cut(s)	578, 613
Sse9I	AATT	1 cut(s)	623
SsiI	CCGC	3 cut(s)	71, 152, 695
SspMI	CTAG	4 cut(s)	68, 128, 369, 459
StyD4I	CCNGG	1 cut(s)	714
TaaI	ACNGT	1 cut(s)	241
TasI	AATT	1 cut(s)	623
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	41, 614
Tru9I	TTAA	2 cut(s)	41, 614
TscAI	CASTG	2 cut(s)	118, 244
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	2 cut(s)	15, 507
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	118, 244
Vha464I	CTTAAG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	623
XbaI	TCTAGA	1 cut(s)	458
XspI	CTAG	4 cut(s)	68, 128, 369, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.