RLG00000023260

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0007363
Physical Location & Seq
Forward (+)
20811833 .. 20814303
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023260

Sequence Viewer

Length: 870 bp
ATGCAGGAGCCAAGGAACCAGTCTTGCTTCGAGTTCTTCTTCCAATTTCCGGCCAATCTCTGCAAGTGTTTTCATTCCTGGATCCACCACTGGACAAAGCCAATGGCTATTATTTGCAGCAACATTTCCCTTAGCCGTGTATTAACAACGCTCGTGCTTATGACAATCCTAGCGGCTGAGAAACGGGTGTGCATCCGGATCCCAGATCAGATCACTGAAACTACAAGGCTAGGGATCCACCCAACGACCAGCCCGCCTTTGAAATCAGCAGTTTTTGCTCTGGGTTGCTTTTGGAGGTCTGAAGCTGTGTTCGGGTGCTTGAATGGGGTTCTTCAGACCACTGTTGGTTATGCTGGAGGATCCAAAACCAATCCTGAGTACAGAAGTTTGGGTGATCATGCCGAGTCTGTGCAGGTGGTATATGATGAAAGGCTAATCAGCTTCAGGCAACTTTTGGAGGTTTTCTGGTCTAGTCATGATTATAGACAAGTATTTGGGCAAGGTCCTGATGTGGGTAACCAATACAGATCTATCGTTTTTACAAATGGAACTGAAGAGTCTAGATTGGCTTCTGTAAGCAAAGGGAGAGAGCAAACTAAGTCAAAGAGCAGCATTGTCACTACTCAAATCCAACCACTTGGAACATTTTATCCTGCTGAACCTGAACATCAGAAGTTTGAGCTGAAGCGCAGGCCATTCCTTCTTCAACTAATGGGAAACTTGCCTGAAGAGGAACTTGAGAGGTCACATTTGGCAGCGAAACTGAATAGCTATGCCGCAGAGCTTTGCCCTCCAAATATTCAGAAGAAGATTGATGTAAAGATCAACGAGATTATTAAAAAAGGATGGCCAATTTTGAGTGACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

290

Amino Acids

32.81

Weight (kDa)

8.58

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 90 - 229 5.8e-44 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
AccIII TCCGGA 1 cut(s) 195
AciI CCGC 3 cut(s) 173, 254, 777
AclWI GGATC 8 cut(s) 76, 89, 193, 206, 229, 242, 354, 367
AcoI YGGCCR 2 cut(s) 51, 848
AcuI CTGAAG 6 cut(s) 317, 321, 427, 573, 704, 747
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 2 cut(s) 49, 512
AgsI TTSAA 3 cut(s) 262, 322, 707
AjnI CCWGG 1 cut(s) 77
AloI GAACNNNNNNTCC 2 cut(s) 634, 666
AluBI AGCT 5 cut(s) 305, 441, 682, 771, 784
AluI AGCT 5 cut(s) 305, 441, 682, 771, 784
AlwI GGATC 8 cut(s) 76, 89, 193, 206, 229, 242, 354, 367
Aor13HI TCCGGA 1 cut(s) 195
AoxI GGCC 3 cut(s) 51, 692, 848
ApeKI GCWGC 3 cut(s) 117, 609, 755
AspLEI GCGC 1 cut(s) 690
AspS9I GGNCC 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 503
BalI TGGCCA 1 cut(s) 850
BamHI GGATCC 4 cut(s) 81, 198, 234, 359
BauI CACGAG 1 cut(s) 152
BbvI GCAGC 3 cut(s) 129, 621, 767
BccI CCATC 1 cut(s) 840
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 1 cut(s) 394
BfaI CTAG 4 cut(s) 170, 230, 471, 561
BfuAI ACCTGC 1 cut(s) 403
BglII AGATCT 1 cut(s) 527
BisI GCNGC 5 cut(s) 118, 174, 610, 756, 777
BlsI GCNGC 5 cut(s) 119, 175, 611, 757, 778
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 6 cut(s) 9, 17, 83, 200, 236, 361
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 375
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 758
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 512
Bse1I ACTGG 2 cut(s) 19, 95
BseAI TCCGGA 1 cut(s) 195
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 2 cut(s) 192, 851
BseLI CCNNNNNNNGG 2 cut(s) 49, 512
BseMII CTCAG 2 cut(s) 168, 366
BseNI ACTGG 2 cut(s) 19, 95
BseXI GCAGC 3 cut(s) 129, 621, 767
BsgI GTGCAG 1 cut(s) 431
BshFI GGCC 3 cut(s) 53, 694, 850
BsiSI CCGG 2 cut(s) 50, 196
BslI CCNNNNNNNGG 2 cut(s) 49, 512
BsnI GGCC 3 cut(s) 53, 694, 850
Bsp13I TCCGGA 1 cut(s) 195
Bsp143I GATC 9 cut(s) 81, 198, 205, 210, 234, 359, 394, 527, 822
BspACI CCGC 3 cut(s) 173, 254, 777
BspANI GGCC 3 cut(s) 53, 694, 850
BspCNI CTCAG 2 cut(s) 169, 367
BspEI TCCGGA 1 cut(s) 195
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 6 cut(s) 9, 17, 83, 200, 236, 361
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 8 cut(s) 76, 89, 193, 206, 229, 242, 354, 367
BsrI ACTGG 2 cut(s) 19, 95
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 9 cut(s) 81, 198, 205, 210, 234, 359, 394, 527, 822
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 2 cut(s) 549, 723
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 254, 692
BstDEI CTNAG 4 cut(s) 131, 177, 375, 597
BstEII GGTNACC 1 cut(s) 515
BstF5I GGATG 2 cut(s) 192, 851
BstHHI GCGC 1 cut(s) 690
BstKTI GATC 9 cut(s) 84, 201, 208, 213, 237, 362, 397, 530, 825
BstMBI GATC 9 cut(s) 81, 198, 205, 210, 234, 359, 394, 527, 822
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 79
BstPI GGTNACC 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 77
BstV1I GCAGC 3 cut(s) 129, 621, 767
BstX2I RGATCY 5 cut(s) 81, 198, 234, 359, 527
BstXI CCANNNNNNTGG 1 cut(s) 638
BstYI RGATCY 5 cut(s) 81, 198, 234, 359, 527
BsuRI GGCC 3 cut(s) 53, 694, 850
BtsCI GGATG 2 cut(s) 192, 851
BtsIMutI CAGTG 3 cut(s) 88, 213, 339
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 254, 692
CciI TCATGA 1 cut(s) 475
CfoI GCGC 1 cut(s) 690
Cfr13I GGNCC 1 cut(s) 503
Csp6I GTAC 1 cut(s) 379
CviAII CATG 2 cut(s) 398, 476
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 4 cut(s) 131, 177, 375, 597
DpnI GATC 9 cut(s) 83, 200, 207, 212, 236, 361, 396, 529, 824
DpnII GATC 9 cut(s) 81, 198, 205, 210, 234, 359, 394, 527, 822
EaeI YGGCCR 2 cut(s) 51, 848
Eam1104I CTCTTC 2 cut(s) 549, 723
EarI CTCTTC 2 cut(s) 549, 723
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 503
Eco57I CTGAAG 6 cut(s) 317, 321, 427, 573, 704, 747
Eco91I GGTNACC 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 503
EcoO65I GGTNACC 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 2 cut(s) 401, 479
FaiI YATR 8 cut(s) 161, 351, 399, 421, 423, 477, 483, 774
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FatI CATG 2 cut(s) 397, 475
FauI CCCGC 1 cut(s) 261
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 5 cut(s) 118, 174, 610, 756, 777
FokI GGATG 2 cut(s) 179, 858
Fsp4HI GCNGC 5 cut(s) 118, 174, 610, 756, 777
FspBI CTAG 4 cut(s) 170, 230, 471, 561
GlaI GCGC 1 cut(s) 689
GluI GCNGC 5 cut(s) 118, 174, 610, 756, 777
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 3 cut(s) 53, 694, 850
HapII CCGG 2 cut(s) 50, 196
HhaI GCGC 1 cut(s) 690
Hin1II CATG 2 cut(s) 401, 479
Hin6I GCGC 1 cut(s) 688
HinP1I GCGC 1 cut(s) 688
HinfI GANTC 2 cut(s) 404, 557
HpaII CCGG 2 cut(s) 50, 196
HphI GGTGA 1 cut(s) 404
Hpy188I TCNGA 5 cut(s) 210, 301, 336, 672, 804
Hpy188III TCNNGA 5 cut(s) 196, 374, 476, 506, 561
HpyAV CCTTC 1 cut(s) 710
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 5 cut(s) 4, 63, 117, 192, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 4 cut(s) 131, 177, 375, 597
Hsp92II CATG 2 cut(s) 401, 479
HspAI GCGC 1 cut(s) 688
Kpn2I TCCGGA 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 9 cut(s) 81, 198, 205, 210, 234, 359, 394, 527, 822
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 3 cut(s) 129, 621, 767
LweI GCATC 1 cut(s) 201
MaeI CTAG 4 cut(s) 170, 230, 471, 561
MaeIII GTNAC 4 cut(s) 515, 616, 744, 860
MalI GATC 9 cut(s) 83, 200, 207, 212, 236, 361, 396, 529, 824
MboI GATC 9 cut(s) 81, 198, 205, 210, 234, 359, 394, 527, 822
MboII GAAGA 8 cut(s) 28, 31, 323, 566, 695, 740, 817, 820
MflI RGATCY 5 cut(s) 81, 198, 234, 359, 527
MlsI TGGCCA 1 cut(s) 850
MluCI AATT 2 cut(s) 44, 852
MluNI TGGCCA 1 cut(s) 850
MlyI GAGTC 2 cut(s) 413, 566
MmeI TCCRAC 1 cut(s) 655
MnlI CCTC 6 cut(s) 288, 350, 451, 724, 735, 801
Mox20I TGGCCA 1 cut(s) 850
MroI TCCGGA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 850
MseI TTAA 2 cut(s) 143, 837
Msp20I TGGCCA 1 cut(s) 850
MspI CCGG 2 cut(s) 50, 196
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 9 cut(s) 81, 198, 205, 210, 234, 359, 394, 527, 822
NlaIII CATG 2 cut(s) 401, 479
NlaIV GGNNCC 6 cut(s) 9, 17, 83, 200, 236, 361
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 3 cut(s) 616, 744, 860
PagI TCATGA 1 cut(s) 475
PaqCI CACCTGC 1 cut(s) 403
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 5 cut(s) 119, 175, 611, 757, 778
PleI GAGTC 2 cut(s) 412, 565
PpsI GAGTC 2 cut(s) 412, 565
PpuMI RGGWCCY 1 cut(s) 503
Psp5II RGGWCCY 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 77
PspEI GGTNACC 1 cut(s) 515
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 6 cut(s) 9, 17, 83, 200, 236, 361
PspPI GGNCC 1 cut(s) 503
PspPPI RGGWCCY 1 cut(s) 503
PsuI RGATCY 5 cut(s) 81, 198, 234, 359, 527
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SaqAI TTAA 2 cut(s) 143, 837
SatI GCNGC 5 cut(s) 118, 174, 610, 756, 777
Sau3AI GATC 9 cut(s) 81, 198, 205, 210, 234, 359, 394, 527, 822
Sau96I GGNCC 1 cut(s) 503
SchI GAGTC 2 cut(s) 413, 566
ScrFI CCNGG 1 cut(s) 79
SfaNI GCATC 1 cut(s) 201
SinI GGWCC 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
Sse9I AATT 2 cut(s) 44, 852
SsiI CCGC 3 cut(s) 173, 254, 777
SspI AATATT 1 cut(s) 799
SspMI CTAG 4 cut(s) 170, 230, 471, 561
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 1 cut(s) 30
TasI AATT 2 cut(s) 44, 852
TatI WGTACW 1 cut(s) 378
TauI GCSGC 2 cut(s) 176, 779
Tru1I TTAA 2 cut(s) 143, 837
Tru9I TTAA 2 cut(s) 143, 837
TscAI CASTG 3 cut(s) 95, 220, 346
TseFI GTSAC 3 cut(s) 616, 744, 860
TseI GCWGC 3 cut(s) 117, 609, 755
Tsp45I GTSAC 3 cut(s) 616, 744, 860
TspDTI ATGAA 2 cut(s) 62, 441
TspRI CASTG 3 cut(s) 95, 220, 346
VpaK11BI GGWCC 1 cut(s) 503
XbaI TCTAGA 1 cut(s) 560
XspI CTAG 4 cut(s) 170, 230, 471, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.