Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008673.1

Orthogroup ID

OG0007363

Physical Location & Seq

Genomic Coordinates Reverse (-)

19046 .. 20731

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008673.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgacaatcctcgcggctgagaaacgggtgtgcatccggatcccagatcagatcactgaaactacaaggctagggatccacccaacgaccagcccgcctttgaaatcagcagtttttgctctgggtagcttttggaggtctgaagctgtgttcgggtgcttgaatggggttcttcagaccactgttggttatgctggaggatccaaagccaatcctgagtacagaagtttgggtgatcatgccgagtctgtgcaggtggtatatgatgaaaggctaatcagcttcaggcaacttttggagattttctggtctagtcatgattatagacaagtatttgggcaaggtcctgatgtgggtaaccaatacagatctatcgtttttacgaatggaactgaagagtctagattggcttctgtaagcaaagggagagagcaaactaagtcaaagagcagcattgtcactactcaaacccaaccacttggaacattttatcctgctgagcctgaacatcagaagtttgagctgaagcgcaggccattccttcttcaactaatgggaaacttgcctgaagaggaacttgagaggtcacatttggcagcgaaactgaatagctatgccgcagagctttgccctccaaatattcagaagaagattgatgtaaagatcaacgagattattaaaaaaggatggccaattttgagtgacttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

236

Amino Acids

26.48

Weight (kDa)

8.37

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18030 AT2G18030
fragaria_vesca	FvH4_6g24560 FvH4_6g24560 FvH4_6g24560
prunus_persica	Prupe.1G202800_v2.0.a1 Prupe.1G202800_v2.0.a1
pyrus_communis	pycom04g04120
rosa_chinensis	RchiOBHm_Chr0c32g0501631 RchiOBHm_Chr0c32g0501641 RchiOBHm_Chr3g0483661 RchiOBHm_Chr3g0483821
rosa_laevigata	RLG00000023260
rosa_multiflora	Rmu_co8365169.1_g000001 Rmu_sc0008673.1_g000006
rosa_roxburghii	Rroxscaffold_6G00398140
rosa_rugosa	Rorug03G0208100
rosa_samantha	Rh3AG256300 Rh3AG256900 Rh3BG293000 Rh3CG290800 Rh3DG286600
rosa_wichuraiana	Rw0G012010 Rw3G023150 Rw3G023210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccII	CGCG	1 cut(s)	14
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	3 cut(s)	14, 95, 618
AclWI	GGATC	6 cut(s)	34, 47, 70, 83, 195, 208
AcoI	YGGCCR	1 cut(s)	689
AcuI	CTGAAG	6 cut(s)	158, 162, 268, 414, 545, 588
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	103, 163, 548
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	6 cut(s)	129, 146, 282, 523, 612, 625
AluI	AGCT	6 cut(s)	129, 146, 282, 523, 612, 625
AlwI	GGATC	6 cut(s)	34, 47, 70, 83, 195, 208
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	2 cut(s)	533, 689
ApeKI	GCWGC	2 cut(s)	450, 596
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	691
BamHI	GGATCC	3 cut(s)	39, 75, 200
BbvI	GCAGC	2 cut(s)	462, 608
BccI	CCATC	1 cut(s)	681
BclI	TGATCA	1 cut(s)	235
BfaI	CTAG	3 cut(s)	71, 312, 402
BfuAI	ACCTGC	1 cut(s)	244
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	4 cut(s)	15, 451, 597, 618
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	4 cut(s)	16, 452, 598, 619
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	3 cut(s)	41, 77, 202
BmsI	GCATC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	599
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
BseAI	TCCGGA	1 cut(s)	36
BseGI	GGATG	2 cut(s)	33, 692
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	3 cut(s)	9, 207, 489
BseXI	GCAGC	2 cut(s)	462, 608
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	535, 691
BsiSI	CCGG	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	353
BsnI	GGCC	2 cut(s)	535, 691
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	8 cut(s)	39, 46, 51, 75, 200, 235, 368, 663
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	3 cut(s)	14, 95, 618
BspANI	GGCC	2 cut(s)	535, 691
BspCNI	CTCAG	3 cut(s)	10, 208, 490
BspEI	TCCGGA	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	41, 77, 202
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	6 cut(s)	34, 47, 70, 83, 195, 208
BssMI	GATC	8 cut(s)	39, 46, 51, 75, 200, 235, 368, 663
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	390, 564
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	95, 533
BstDEI	CTNAG	4 cut(s)	18, 216, 438, 498
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	33, 692
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	8 cut(s)	42, 49, 54, 78, 203, 238, 371, 666
BstMBI	GATC	8 cut(s)	39, 46, 51, 75, 200, 235, 368, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstPI	GGTNACC	1 cut(s)	356
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	462, 608
BstX2I	RGATCY	4 cut(s)	39, 75, 200, 368
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	4 cut(s)	39, 75, 200, 368
BsuRI	GGCC	2 cut(s)	535, 691
BtsCI	GGATG	2 cut(s)	33, 692
BtsIMutI	CAGTG	2 cut(s)	54, 180
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	95, 533
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	239, 317
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	4 cut(s)	18, 216, 438, 498
DpnI	GATC	8 cut(s)	41, 48, 53, 77, 202, 237, 370, 665
DpnII	GATC	8 cut(s)	39, 46, 51, 75, 200, 235, 368, 663
EaeI	YGGCCR	1 cut(s)	689
Eam1104I	CTCTTC	2 cut(s)	390, 564
EarI	CTCTTC	2 cut(s)	390, 564
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	6 cut(s)	158, 162, 268, 414, 545, 588
Eco91I	GGTNACC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	344
EcoO65I	GGTNACC	1 cut(s)	356
FaeI	CATG	2 cut(s)	242, 320
FaiI	YATR	7 cut(s)	192, 240, 262, 264, 318, 324, 615
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FatI	CATG	2 cut(s)	238, 316
FauI	CCCGC	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	15, 451, 597, 618
FokI	GGATG	2 cut(s)	20, 699
Fsp4HI	GCNGC	4 cut(s)	15, 451, 597, 618
FspBI	CTAG	3 cut(s)	71, 312, 402
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	4 cut(s)	15, 451, 597, 618
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	535, 691
HapII	CCGG	1 cut(s)	37
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	2 cut(s)	242, 320
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HinfI	GANTC	2 cut(s)	245, 398
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	5 cut(s)	51, 142, 177, 513, 645
Hpy188III	TCNNGA	5 cut(s)	37, 215, 317, 347, 402
HpyAV	CCTTC	1 cut(s)	551
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	33, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	4 cut(s)	18, 216, 438, 498
Hsp92II	CATG	2 cut(s)	242, 320
HspAI	GCGC	1 cut(s)	529
Kpn2I	TCCGGA	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	8 cut(s)	39, 46, 51, 75, 200, 235, 368, 663
Lsp1109I	GCAGC	2 cut(s)	462, 608
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	3 cut(s)	71, 312, 402
MaeIII	GTNAC	4 cut(s)	356, 457, 585, 701
MalI	GATC	8 cut(s)	41, 48, 53, 77, 202, 237, 370, 665
MboI	GATC	8 cut(s)	39, 46, 51, 75, 200, 235, 368, 663
MboII	GAAGA	6 cut(s)	164, 407, 536, 581, 658, 661
MflI	RGATCY	4 cut(s)	39, 75, 200, 368
MlsI	TGGCCA	1 cut(s)	691
MluCI	AATT	1 cut(s)	693
MluNI	TGGCCA	1 cut(s)	691
MlyI	GAGTC	2 cut(s)	254, 407
MnlI	CCTC	6 cut(s)	20, 129, 191, 565, 576, 642
Mox20I	TGGCCA	1 cut(s)	691
MroI	TCCGGA	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	691
MseI	TTAA	1 cut(s)	678
Msp20I	TGGCCA	1 cut(s)	691
MspI	CCGG	1 cut(s)	37
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	8 cut(s)	39, 46, 51, 75, 200, 235, 368, 663
NlaIII	CATG	2 cut(s)	242, 320
NlaIV	GGNNCC	3 cut(s)	41, 77, 202
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	3 cut(s)	457, 585, 701
PagI	TCATGA	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	16, 452, 598, 619
PleI	GAGTC	2 cut(s)	253, 406
PpsI	GAGTC	2 cut(s)	253, 406
PpuMI	RGGWCCY	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	344
PspEI	GGTNACC	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	41, 77, 202
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
PsuI	RGATCY	4 cut(s)	39, 75, 200, 368
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	4 cut(s)	15, 451, 597, 618
Sau3AI	GATC	8 cut(s)	39, 46, 51, 75, 200, 235, 368, 663
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	2 cut(s)	254, 407
SfaNI	GCATC	1 cut(s)	42
SinI	GGWCC	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	1 cut(s)	693
SsiI	CCGC	3 cut(s)	14, 95, 618
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	3 cut(s)	71, 312, 402
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	1 cut(s)	693
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	2 cut(s)	17, 620
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	2 cut(s)	61, 187
TseFI	GTSAC	3 cut(s)	457, 585, 701
TseI	GCWGC	2 cut(s)	450, 596
Tsp45I	GTSAC	3 cut(s)	457, 585, 701
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	61, 187
VpaK11BI	GGWCC	1 cut(s)	344
XbaI	TCTAGA	1 cut(s)	401
XspI	CTAG	3 cut(s)	71, 312, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.