Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007363

Physical Location & Seq

Genomic Coordinates Reverse (-)

3680335 .. 3681889

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTTTTCTTCACAGCAGCATTTCCCTTAGCCGTCTATTAACAACATTCGTGCTCCTGACAATTCTTACGGCCGAGAGACGCGTGTCCATCAGGATCCCAGATCGGATCACTGAAACCACAAGAGACCTACCTGACAACCAATCCCTGAAAACAGCAGTTTTCGCTCTGGGAAGCTTTTGGAGATCCGAAGCTGTCTTTGGGTGCTTGAATGGAGTTGTACAGACGACTGTTGGTTATGCTGGCGGATCCAAAACCAACCCTGAGTACAGAAGCTTGGGTGATCATGCCGAATCTATCCAGGTTGTATATGATCACAGGCGGATTAGCTTCAAGCAACTTTTGGAGGTTTTCTGGTCCAGTCATGATTATAGGCAAGTATTTGGGCAAGGTCCTGATGTGGGTAACCAATACAGATCTATCATTTTTACGAATGGAACTGAAGAGTCCAGATTGGCCGCTACGAGCAAAGAGAGAGAGCAAACTAAGTCAAAAAGTAGCAGTGTAACTACTAAAATCCTACCTCTGGGATCGTTTTATCCTGCTGAGCCTGAACATCAGAAGTTTGAGCTGAAACGTAGGCCATTTCTTCTCCAGTTAATTGGAAACTTGCCGGAAGAGGAACTTGAGAGGTCAAATTTGGCTGCAAAACTGAATGGATATGCTGCAGAGCTTTGCCCTCCGAAAATCCAGAGACAGATTGATGCAAAAATCAACGAAATTATTAAAAAGGGATGGCCCATTTTGAGAGACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

253

Amino Acids

28.51

Weight (kDa)

9.18

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18030 AT2G18030
fragaria_vesca	FvH4_6g24560 FvH4_6g24560 FvH4_6g24560
prunus_persica	Prupe.1G202800_v2.0.a1 Prupe.1G202800_v2.0.a1
pyrus_communis	pycom04g04120
rosa_chinensis	RchiOBHm_Chr0c32g0501631 RchiOBHm_Chr0c32g0501641 RchiOBHm_Chr3g0483661 RchiOBHm_Chr3g0483821
rosa_laevigata	RLG00000023260
rosa_multiflora	Rmu_co8365169.1_g000001 Rmu_sc0008673.1_g000006
rosa_roxburghii	Rroxscaffold_6G00398140
rosa_rugosa	Rorug03G0208100
rosa_samantha	Rh3AG256300 Rh3AG256900 Rh3BG293000 Rh3CG290800 Rh3DG286600
rosa_wichuraiana	Rw0G012010 Rw3G023150 Rw3G023210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	3 cut(s)	246, 322, 459
AclWI	GGATC	7 cut(s)	91, 104, 116, 180, 243, 256, 538
AcoI	YGGCCR	2 cut(s)	72, 456
AcsI	RAATTY	1 cut(s)	637
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	2 cut(s)	222, 269
AfiI	CCNNNNNNNGG	2 cut(s)	401, 526
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	211, 334
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	6 cut(s)	177, 194, 276, 330, 571, 673
AluI	AGCT	6 cut(s)	177, 194, 276, 330, 571, 673
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	4 cut(s)	73, 120, 688, 744
AlwI	GGATC	7 cut(s)	91, 104, 116, 180, 243, 256, 538
AoxI	GGCC	4 cut(s)	72, 456, 581, 737
ApeKI	GCWGC	3 cut(s)	18, 644, 665
ApoI	RAATTY	1 cut(s)	637
AspS9I	GGNCC	3 cut(s)	357, 392, 738
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	357, 392
BamHI	GGATCC	2 cut(s)	96, 248
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	30, 631, 652
BccI	CCATC	2 cut(s)	98, 729
BceAI	ACGGC	2 cut(s)	18, 87
BciT130I	CCWGG	1 cut(s)	302
BclI	TGATCA	2 cut(s)	283, 313
BcoDI	GTCTC	4 cut(s)	73, 120, 688, 744
BfmI	CTRYAG	2 cut(s)	666, 755
BglII	AGATCT	1 cut(s)	416
BisI	GCNGC	4 cut(s)	19, 459, 645, 666
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	4 cut(s)	20, 460, 646, 667
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	2 cut(s)	357, 392
BmgT120I	GGNCC	3 cut(s)	357, 392, 738
BmiI	GGNNCC	2 cut(s)	98, 250
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	694
BoxI	GACNNNNGTC	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	647
BsaI	GGTCTC	2 cut(s)	120, 744
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 526
Bse1I	ACTGG	2 cut(s)	360, 595
BseBI	CCWGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	740
BseLI	CCNNNNNNNGG	2 cut(s)	401, 526
BseMII	CTCAG	2 cut(s)	255, 537
BseNI	ACTGG	2 cut(s)	360, 595
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	30, 631, 652
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	4 cut(s)	74, 458, 583, 739
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	401, 526
BsmAI	GTCTC	4 cut(s)	73, 120, 688, 744
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	4 cut(s)	74, 458, 583, 739
Bso31I	GGTCTC	2 cut(s)	120, 744
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	9 cut(s)	96, 103, 108, 185, 248, 283, 313, 416, 530
Bsp1720I	GCTNAGC	1 cut(s)	546
BspACI	CCGC	3 cut(s)	246, 322, 459
BspANI	GGCC	4 cut(s)	74, 458, 583, 739
BspCNI	CTCAG	2 cut(s)	256, 538
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	98, 250
BspMAI	CTGCAG	1 cut(s)	670
BspPI	GGATC	7 cut(s)	91, 104, 116, 180, 243, 256, 538
BspTNI	GGTCTC	2 cut(s)	120, 744
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	360, 595
BssMI	GATC	9 cut(s)	96, 103, 108, 185, 248, 283, 313, 416, 530
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	2 cut(s)	438, 612
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	4 cut(s)	29, 264, 486, 546
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	740
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	9 cut(s)	99, 106, 111, 188, 251, 286, 316, 419, 533
BstMAI	GTCTC	4 cut(s)	73, 120, 688, 744
BstMBI	GATC	9 cut(s)	96, 103, 108, 185, 248, 283, 313, 416, 530
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	302
BstPAI	GACNNNNGTC	1 cut(s)	85
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	2 cut(s)	666, 755
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	30, 631, 652
BstX2I	RGATCY	4 cut(s)	96, 185, 248, 416
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	4 cut(s)	96, 185, 248, 416
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	4 cut(s)	74, 458, 583, 739
BtsCI	GGATG	1 cut(s)	740
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	111, 508
Cac8I	GCNNGC	1 cut(s)	244
CciI	TCATGA	1 cut(s)	364
Cfr13I	GGNCC	3 cut(s)	357, 392, 738
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	221, 268
CviAII	CATG	2 cut(s)	287, 365
CviQI	GTAC	2 cut(s)	221, 268
DdeI	CTNAG	4 cut(s)	29, 264, 486, 546
DpnI	GATC	9 cut(s)	98, 105, 110, 187, 250, 285, 315, 418, 532
DpnII	GATC	9 cut(s)	96, 103, 108, 185, 248, 283, 313, 416, 530
EaeI	YGGCCR	2 cut(s)	72, 456
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	438, 612
EarI	CTCTTC	2 cut(s)	438, 612
EciI	GGCGGA	2 cut(s)	261, 337
EclXI	CGGCCG	1 cut(s)	72
Eco31I	GGTCTC	2 cut(s)	120, 744
Eco47I	GGWCC	2 cut(s)	357, 392
Eco52I	CGGCCG	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	392
EcoO65I	GGTNACC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	2 cut(s)	290, 368
FaiI	YATR	7 cut(s)	240, 288, 310, 312, 366, 372, 663
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	2 cut(s)	286, 364
FbaI	TGATCA	2 cut(s)	283, 313
Fnu4HI	GCNGC	4 cut(s)	19, 459, 645, 666
FokI	GGATG	1 cut(s)	747
Fsp4HI	GCNGC	4 cut(s)	19, 459, 645, 666
GluI	GCNGC	4 cut(s)	19, 459, 645, 666
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	4 cut(s)	74, 458, 583, 739
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	290, 368
HindIII	AAGCTT	2 cut(s)	175, 274
HinfI	GANTC	2 cut(s)	293, 446
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	108, 190, 561, 684
Hpy188III	TCNNGA	6 cut(s)	58, 94, 365, 395, 450, 691
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	3 cut(s)	647, 668, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	4 cut(s)	29, 264, 486, 546
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	2 cut(s)	290, 368
Ksp22I	TGATCA	2 cut(s)	283, 313
Kzo9I	GATC	9 cut(s)	96, 103, 108, 185, 248, 283, 313, 416, 530
LmnI	GCTCC	1 cut(s)	60
Lsp1109I	GCAGC	3 cut(s)	30, 631, 652
LweI	GCATC	1 cut(s)	694
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	2 cut(s)	404, 505
MalI	GATC	9 cut(s)	98, 105, 110, 187, 250, 285, 315, 418, 532
MboI	GATC	9 cut(s)	96, 103, 108, 185, 248, 283, 313, 416, 530
MboII	GAAGA	3 cut(s)	455, 581, 629
MflI	RGATCY	4 cut(s)	96, 185, 248, 416
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	4 cut(s)	63, 600, 637, 720
MluI	ACGCGT	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	5 cut(s)	340, 534, 613, 624, 690
MseI	TTAA	3 cut(s)	41, 599, 726
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	9 cut(s)	96, 103, 108, 185, 248, 283, 313, 416, 530
NlaIII	CATG	2 cut(s)	290, 368
NlaIV	GGNNCC	2 cut(s)	98, 250
NmeAIII	GCCGAG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	4 cut(s)	20, 460, 646, 667
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	392
PshAI	GACNNNNGTC	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	300
PspEI	GGTNACC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	98, 250
PspPI	GGNCC	3 cut(s)	357, 392, 738
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	4 cut(s)	96, 185, 248, 416
RsaI	GTAC	2 cut(s)	222, 269
RsaNI	GTAC	2 cut(s)	221, 268
SaqAI	TTAA	3 cut(s)	41, 599, 726
SatI	GCNGC	4 cut(s)	19, 459, 645, 666
Sau3AI	GATC	9 cut(s)	96, 103, 108, 185, 248, 283, 313, 416, 530
Sau96I	GGNCC	3 cut(s)	357, 392, 738
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	2 cut(s)	666, 755
SinI	GGWCC	2 cut(s)	357, 392
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	4 cut(s)	63, 600, 637, 720
SsiI	CCGC	3 cut(s)	246, 322, 459
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	580
TasI	AATT	4 cut(s)	63, 600, 637, 720
TatI	WGTACW	2 cut(s)	220, 267
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	41, 599, 726
Tru9I	TTAA	3 cut(s)	41, 599, 726
TscAI	CASTG	2 cut(s)	118, 508
TseI	GCWGC	3 cut(s)	18, 644, 665
TspRI	CASTG	2 cut(s)	118, 508
VpaK11BI	GGWCC	2 cut(s)	357, 392
XapI	RAATTY	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.