FvH4_6g24560

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007363
Physical Location & Seq
Reverse (-)
18626571 .. 18629540
2970 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24560.t1

Sequence Viewer

Length: 771 bp
ATGGCTATTATTTGCAGCAACATTTCCCTTAGCCGTGTATTAACAATGCTCGTGCTTATGACAATTCTAGCGGCTGAGAAACGGGTGTGCATCCGGATCCCGGATCAGATCACTGAAACTACAAAGCTAGGGATCCACCCAACAACCGCCGCCCCGTCTTTGAAATCAGCAATTTTTGCTCTTGGTAGCTTTTGGAGGACGGAGGCTGTGTTTGGGTGCTTGAATGGGGTCCTTCAGACCACTGTGGGTTATGCTGGAGGATCCAAAACCAATCCTGAGTACAGAAGTTTGGGTGATCATGCCGAGTCTGTGCAGGTTGTATATGATGATAGGCTAATCAGCTACAAGCAACTTTTGGAGGTTTTCTGGTCTAGTCATGATTATAGACAAGTATTTGGGCAAGGTCCTGATGTGGGTAACCAATACAGATCTATCATTTTTACGAATGGAACTGAAGAGTTTAGATTGGCTTCTGTAAGCAAAGAGCGTGAGCAAACTAAGTCAAGGAGCAGCATTGTCACTACTCAAATCCAGCCACTTGGACCATTTTATCCTGCTGAGCCTGAACATCAGAAGTTTGAGCTGAAACGTAGACCATTCCTTCTTCAACTAATGGGAAACTTGCCTGAAGAGGAACTAGAGAGGTCGCATTTGGCAGCGAAACTGAATAGCTATGCAGCAGAGCTTTGCCCTCCAAATATTCAGAAGAAGATTGATGTAAAGATCAACGACATTATTAAAAAAGGGTGGCCAATTTTGAGCAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

257

Amino Acids

28.74

Weight (kDa)

8.6

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 57 - 196 1.6e-43 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 592
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 3 cut(s) 71, 147, 150
AclWI GGATC 7 cut(s) 91, 104, 111, 127, 140, 255, 268
AcoI YGGCCR 1 cut(s) 749
AcuI CTGAAG 3 cut(s) 218, 474, 648
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 2 cut(s) 100, 413
AgsI TTSAA 3 cut(s) 163, 223, 608
AluBI AGCT 6 cut(s) 127, 189, 342, 583, 672, 685
AluI AGCT 6 cut(s) 127, 189, 342, 583, 672, 685
AlwI GGATC 7 cut(s) 91, 104, 111, 127, 140, 255, 268
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 1 cut(s) 749
ApeKI GCWGC 4 cut(s) 15, 510, 656, 677
AspS9I GGNCC 3 cut(s) 229, 404, 542
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 3 cut(s) 229, 404, 542
BalI TGGCCA 1 cut(s) 751
BamHI GGATCC 3 cut(s) 96, 132, 260
BauI CACGAG 1 cut(s) 50
BbvI GCAGC 4 cut(s) 27, 522, 668, 689
BceAI ACGGC 1 cut(s) 18
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 4 cut(s) 68, 128, 372, 638
BfuAI ACCTGC 1 cut(s) 304
BglII AGATCT 1 cut(s) 428
BisI GCNGC 6 cut(s) 16, 72, 150, 511, 657, 678
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 6 cut(s) 17, 73, 151, 512, 658, 679
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 3 cut(s) 229, 404, 542
BmgT120I GGNCC 3 cut(s) 229, 404, 542
BmiI GGNNCC 4 cut(s) 98, 134, 230, 262
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 29
Bpu1102I GCTNAGC 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 413
BseAI TCCGGA 1 cut(s) 93
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 100, 413
BseMII CTCAG 3 cut(s) 66, 267, 549
BseXI GCAGC 4 cut(s) 27, 522, 668, 689
BsgI GTGCAG 1 cut(s) 332
BshFI GGCC 1 cut(s) 751
BsiSI CCGG 2 cut(s) 94, 101
BslI CCNNNNNNNGG 2 cut(s) 100, 413
BsnI GGCC 1 cut(s) 751
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 8 cut(s) 96, 103, 108, 132, 260, 295, 428, 723
Bsp1720I GCTNAGC 1 cut(s) 558
BspACI CCGC 3 cut(s) 71, 147, 150
BspANI GGCC 1 cut(s) 751
BspCNI CTCAG 3 cut(s) 67, 268, 550
BspEI TCCGGA 1 cut(s) 93
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 4 cut(s) 98, 134, 230, 262
BspMI ACCTGC 1 cut(s) 304
BspPI GGATC 7 cut(s) 91, 104, 111, 127, 140, 255, 268
BssMI GATC 8 cut(s) 96, 103, 108, 132, 260, 295, 428, 723
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 450, 624
BstAPI GCANNNNNTGC 1 cut(s) 176
BstDEI CTNAG 5 cut(s) 29, 75, 276, 498, 558
BstEII GGTNACC 1 cut(s) 416
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 8 cut(s) 99, 106, 111, 135, 263, 298, 431, 726
BstMBI GATC 8 cut(s) 96, 103, 108, 132, 260, 295, 428, 723
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 4 cut(s) 27, 522, 668, 689
BstX2I RGATCY 4 cut(s) 96, 132, 260, 428
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 4 cut(s) 96, 132, 260, 428
BsuRI GGCC 1 cut(s) 751
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 111, 240
BveI ACCTGC 1 cut(s) 304
CciI TCATGA 1 cut(s) 376
Cfr13I GGNCC 3 cut(s) 229, 404, 542
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 299, 377
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 5 cut(s) 29, 75, 276, 498, 558
DpnI GATC 8 cut(s) 98, 105, 110, 134, 262, 297, 430, 725
DpnII GATC 8 cut(s) 96, 103, 108, 132, 260, 295, 428, 723
EaeI YGGCCR 1 cut(s) 749
Eam1104I CTCTTC 2 cut(s) 450, 624
EarI CTCTTC 2 cut(s) 450, 624
Eco47I GGWCC 3 cut(s) 229, 404, 542
Eco57I CTGAAG 3 cut(s) 218, 474, 648
Eco91I GGTNACC 1 cut(s) 416
EcoO109I RGGNCCY 2 cut(s) 229, 404
EcoO65I GGTNACC 1 cut(s) 416
FaeI CATG 2 cut(s) 302, 380
FaiI YATR 8 cut(s) 59, 252, 300, 322, 324, 378, 384, 675
FatI CATG 2 cut(s) 298, 376
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 1 cut(s) 592
Fnu4HI GCNGC 6 cut(s) 16, 72, 150, 511, 657, 678
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 6 cut(s) 16, 72, 150, 511, 657, 678
FspBI CTAG 4 cut(s) 68, 128, 372, 638
GluI GCNGC 6 cut(s) 16, 72, 150, 511, 657, 678
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 751
HapII CCGG 2 cut(s) 94, 101
Hin1II CATG 2 cut(s) 302, 380
HinfI GANTC 1 cut(s) 305
HpaII CCGG 2 cut(s) 94, 101
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 593
Hpy188I TCNGA 4 cut(s) 108, 237, 573, 705
Hpy188III TCNNGA 4 cut(s) 94, 275, 377, 407
Hpy8I GTNNAC 1 cut(s) 593
HpyAV CCTTC 2 cut(s) 242, 611
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 4 cut(s) 15, 90, 313, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 5 cut(s) 29, 75, 276, 498, 558
HpySE526I ACGT 1 cut(s) 589
Hsp92II CATG 2 cut(s) 302, 380
Kpn2I TCCGGA 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 8 cut(s) 96, 103, 108, 132, 260, 295, 428, 723
LmnI GCTCC 1 cut(s) 507
Lsp1109I GCAGC 4 cut(s) 27, 522, 668, 689
LweI GCATC 1 cut(s) 99
MaeI CTAG 4 cut(s) 68, 128, 372, 638
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 2 cut(s) 416, 517
MalI GATC 8 cut(s) 98, 105, 110, 134, 262, 297, 430, 725
MboI GATC 8 cut(s) 96, 103, 108, 132, 260, 295, 428, 723
MboII GAAGA 5 cut(s) 467, 596, 641, 718, 721
MflI RGATCY 4 cut(s) 96, 132, 260, 428
MlsI TGGCCA 1 cut(s) 751
MluCI AATT 4 cut(s) 63, 171, 753, 763
MluNI TGGCCA 1 cut(s) 751
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 7 cut(s) 189, 196, 251, 352, 625, 636, 702
Mox20I TGGCCA 1 cut(s) 751
MroI TCCGGA 1 cut(s) 93
MscI TGGCCA 1 cut(s) 751
MseI TTAA 2 cut(s) 41, 738
Msp20I TGGCCA 1 cut(s) 751
MspI CCGG 2 cut(s) 94, 101
MspR9I CCNGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 1 cut(s) 101
NdeII GATC 8 cut(s) 96, 103, 108, 132, 260, 295, 428, 723
NlaIII CATG 2 cut(s) 302, 380
NlaIV GGNNCC 4 cut(s) 98, 134, 230, 262
NmeAIII GCCGAG 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 517
PagI TCATGA 1 cut(s) 376
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 6 cut(s) 17, 73, 151, 512, 658, 679
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PpuMI RGGWCCY 2 cut(s) 229, 404
Psp5II RGGWCCY 2 cut(s) 229, 404
PspEI GGTNACC 1 cut(s) 416
PspN4I GGNNCC 4 cut(s) 98, 134, 230, 262
PspPI GGNCC 3 cut(s) 229, 404, 542
PspPPI RGGWCCY 2 cut(s) 229, 404
PsuI RGATCY 4 cut(s) 96, 132, 260, 428
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 41, 738
SatI GCNGC 6 cut(s) 16, 72, 150, 511, 657, 678
Sau3AI GATC 8 cut(s) 96, 103, 108, 132, 260, 295, 428, 723
Sau96I GGNCC 3 cut(s) 229, 404, 542
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 101
SfaNI GCATC 1 cut(s) 99
SinI GGWCC 3 cut(s) 229, 404, 542
Sse9I AATT 4 cut(s) 63, 171, 753, 763
SsiI CCGC 3 cut(s) 71, 147, 150
SspI AATATT 1 cut(s) 700
SspMI CTAG 4 cut(s) 68, 128, 372, 638
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 592
TasI AATT 4 cut(s) 63, 171, 753, 763
TatI WGTACW 1 cut(s) 279
TauI GCSGC 2 cut(s) 74, 152
Tru1I TTAA 2 cut(s) 41, 738
Tru9I TTAA 2 cut(s) 41, 738
TscAI CASTG 2 cut(s) 118, 247
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 4 cut(s) 15, 510, 656, 677
Tsp45I GTSAC 1 cut(s) 517
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 2 cut(s) 118, 247
VpaK11BI GGWCC 3 cut(s) 229, 404, 542
XmiI GTMKAC 1 cut(s) 592
XspI CTAG 4 cut(s) 68, 128, 372, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.