Rh3BG293000

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007363
Physical Location & Seq
Reverse (-)
29380830 .. 29385374
4545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG293000.1

Sequence Viewer

Length: 720 bp
ATGGCTATTATTTGCAGCAACATTTCCCTTAGCCGTGTATTAACAACGCTCGTGCTTATGACAATCCTAGCGGCTGAGAAACGGGTGTGCATCCGGATCCCAGATCAGATCACTGAAACTACAAGGCTAGGGATCCACCCAACGACCAGCCCGCCTTTGAAATCAGCAGTTTTTGCTCTGGGTTGCTTTTGGAGGTCTGAAGCTGTGTTCGGGTGCTTGAATGGGGTTCTTCAGACCACTGTTGGTTATGCTGGAGGATCCAAAACCAATCCTGAGTACAGAAGTTTGGGTGATCATGCCGAGTCTGTGCAGGTGGTATATGATGAAAGGCTAATCAGCTTCAGGCAACTTTTGGAGGTTTTCTGGTCTAGTCATGATTATAGACAAGTATTTGGGCAAGGTCCTGATGTGGGTAACCAATACAGATCTATCATTTTTACAAATGGAACTGAAGAGTCTAGATTGGCTTCTGTAAGCAAAGGGAGAGAGCAAACTAAGTCAAAGAGCAGCATTGTCACTACTCAAATCCAACCACTTGGAACATTTTATCCTGCTGAGCCTGAACATCAGGTACAACTCAAGATCCTATACCTTTCTGCCCAAACTGTAGTCTTAAGGAGGGAATTTTCAGTCAGATCATTTATTCTAAACATTTCTTATATCATCAGCTCGCTTTTTTTTTTTTTGGGGAGTTGGTTTCTTTTATTCCTGGTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

239

Amino Acids

26.86

Weight (kDa)

8.93

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 56 - 191 2.7e-43 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 301
Acc36I ACCTGC 1 cut(s) 301
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 2 cut(s) 71, 152
AclWI GGATC 7 cut(s) 91, 104, 127, 140, 252, 265, 577
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 4 cut(s) 215, 219, 325, 471
AfaI GTAC 2 cut(s) 278, 573
AfiI CCNNNNNNNGG 1 cut(s) 410
AflII CTTAAG 1 cut(s) 613
AgsI TTSAA 2 cut(s) 160, 220
AjnI CCWGG 1 cut(s) 708
AloI GAACNNNNNNTCC 2 cut(s) 532, 564
AluBI AGCT 3 cut(s) 203, 339, 669
AluI AGCT 3 cut(s) 203, 339, 669
AlwI GGATC 7 cut(s) 91, 104, 127, 140, 252, 265, 577
Aor13HI TCCGGA 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 15, 507
ApoI RAATTY 1 cut(s) 623
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 401
BamHI GGATCC 3 cut(s) 96, 132, 257
BauI CACGAG 1 cut(s) 50
BbvI GCAGC 2 cut(s) 27, 519
BceAI ACGGC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 710
BclI TGATCA 1 cut(s) 292
BfaI CTAG 4 cut(s) 68, 128, 369, 459
BfmI CTRYAG 1 cut(s) 606
BfrI CTTAAG 1 cut(s) 613
BfuAI ACCTGC 1 cut(s) 301
BglII AGATCT 1 cut(s) 425
BisI GCNGC 3 cut(s) 16, 72, 508
BlpI GCTNAGC 1 cut(s) 555
BlsI GCNGC 3 cut(s) 17, 73, 509
Bme1390I CCNGG 1 cut(s) 710
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 3 cut(s) 98, 134, 259
BmrFI CCNGG 1 cut(s) 710
BmsI GCATC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 29
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 563
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 410
BseAI TCCGGA 1 cut(s) 93
BseBI CCWGG 1 cut(s) 710
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 3 cut(s) 66, 264, 546
BseXI GCAGC 2 cut(s) 27, 519
BsgI GTGCAG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 410
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
Bsp1720I GCTNAGC 1 cut(s) 555
BspACI CCGC 2 cut(s) 71, 152
BspCNI CTCAG 3 cut(s) 67, 265, 547
BspEI TCCGGA 1 cut(s) 93
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 3 cut(s) 98, 134, 259
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 7 cut(s) 91, 104, 127, 140, 252, 265, 577
BspTI CTTAAG 1 cut(s) 613
BssMI GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 241, 607
Bst6I CTCTTC 1 cut(s) 447
BstAFI CTTAAG 1 cut(s) 613
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 152, 671
BstDEI CTNAG 5 cut(s) 29, 75, 273, 495, 555
BstEII GGTNACC 1 cut(s) 413
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 9 cut(s) 99, 106, 111, 135, 260, 295, 428, 585, 638
BstMBI GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 710
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 1 cut(s) 606
BstV1I GCAGC 2 cut(s) 27, 519
BstX2I RGATCY 5 cut(s) 96, 132, 257, 425, 582
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 5 cut(s) 96, 132, 257, 425, 582
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 111, 237
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 2 cut(s) 152, 671
CciI TCATGA 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 401
Csp6I GTAC 2 cut(s) 277, 572
CviAII CATG 2 cut(s) 296, 374
CviQI GTAC 2 cut(s) 277, 572
DdeI CTNAG 5 cut(s) 29, 75, 273, 495, 555
DpnI GATC 9 cut(s) 98, 105, 110, 134, 259, 294, 427, 584, 637
DpnII GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 401
Eco57I CTGAAG 4 cut(s) 215, 219, 325, 471
Eco91I GGTNACC 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 401
EcoO65I GGTNACC 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 708
FaeI CATG 2 cut(s) 299, 377
FaiI YATR 9 cut(s) 59, 249, 297, 319, 321, 375, 381, 589, 660
FatI CATG 2 cut(s) 295, 373
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 16, 72, 508
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 16, 72, 508
FspBI CTAG 4 cut(s) 68, 128, 369, 459
GluI GCNGC 3 cut(s) 16, 72, 508
GsuI CTGGAG 1 cut(s) 273
HapII CCGG 1 cut(s) 94
Hin1II CATG 2 cut(s) 299, 377
HinfI GANTC 2 cut(s) 302, 455
HpaII CCGG 1 cut(s) 94
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 4 cut(s) 108, 199, 234, 635
Hpy188III TCNNGA 6 cut(s) 94, 272, 374, 404, 459, 580
HpyCH4III ACNGT 2 cut(s) 241, 607
HpyCH4V TGCA 3 cut(s) 15, 90, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 5 cut(s) 29, 75, 273, 495, 555
Hsp92II CATG 2 cut(s) 299, 377
Kpn2I TCCGGA 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
Lsp1109I GCAGC 2 cut(s) 27, 519
LweI GCATC 1 cut(s) 99
MaeI CTAG 4 cut(s) 68, 128, 369, 459
MaeIII GTNAC 2 cut(s) 413, 514
MalI GATC 9 cut(s) 98, 105, 110, 134, 259, 294, 427, 584, 637
MboI GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
MboII GAAGA 2 cut(s) 221, 464
MflI RGATCY 5 cut(s) 96, 132, 257, 425, 582
MluCI AATT 1 cut(s) 623
MlyI GAGTC 2 cut(s) 311, 464
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 4 cut(s) 186, 248, 349, 612
MroI TCCGGA 1 cut(s) 93
MseI TTAA 2 cut(s) 41, 614
MspCI CTTAAG 1 cut(s) 613
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
NlaIII CATG 2 cut(s) 299, 377
NlaIV GGNNCC 3 cut(s) 98, 134, 259
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 514
PagI TCATGA 1 cut(s) 373
PaqCI CACCTGC 1 cut(s) 301
PkrI GCNGC 3 cut(s) 17, 73, 509
PleI GAGTC 2 cut(s) 310, 463
PpsI GAGTC 2 cut(s) 310, 463
PpuMI RGGWCCY 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 708
PspEI GGTNACC 1 cut(s) 413
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 3 cut(s) 98, 134, 259
PspPI GGNCC 1 cut(s) 401
PspPPI RGGWCCY 1 cut(s) 401
PsrI GAACNNNNNNTAC 2 cut(s) 555, 587
PsuI RGATCY 5 cut(s) 96, 132, 257, 425, 582
RsaI GTAC 2 cut(s) 278, 573
RsaNI GTAC 2 cut(s) 277, 572
SaqAI TTAA 2 cut(s) 41, 614
SatI GCNGC 3 cut(s) 16, 72, 508
Sau3AI GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 2 cut(s) 311, 464
ScrFI CCNGG 1 cut(s) 710
SetI ASST 9 cut(s) 197, 205, 315, 341, 360, 403, 573, 594, 671
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 578, 613
SmoI CTYRAG 2 cut(s) 578, 613
Sse9I AATT 1 cut(s) 623
SsiI CCGC 2 cut(s) 71, 152
SspMI CTAG 4 cut(s) 68, 128, 369, 459
StyD4I CCNGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 241, 607
TasI AATT 1 cut(s) 623
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 41, 614
Tru9I TTAA 2 cut(s) 41, 614
TscAI CASTG 2 cut(s) 118, 244
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 2 cut(s) 15, 507
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 339
TspRI CASTG 2 cut(s) 118, 244
Vha464I CTTAAG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 1 cut(s) 623
XbaI TCTAGA 1 cut(s) 458
XspI CTAG 4 cut(s) 68, 128, 369, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.