Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007363

Physical Location & Seq

Genomic Coordinates Reverse (-)

18510145 .. 18519393

Gene Structure 9249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0208100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

ATGGCGCCATCTAATAGAGCAGCAGCAGCTAAAGCGATAGCTTTGAGGATGAAAGCTGTGCAAATGAAAAGAACTAGCTCTAAGGATGCAGGGCCGTCAACCACACCTAAAGCTTTGTCTCCAAAGAAGAGGGTTGTGTCTGCTAAGAAGAAGGAGGTGTCCCCGAAGAAGAAGGTTGTCCAAACTAAGAAGAAGACTAGATCCCCGAAGAAGAAGACAAAGGCTGTATCAGAGAAATCTGTATCAAAGACCAAGTCTGGAAATAGTTCTAAGTCTAATAAGATAGAGGTTGGTGATGATATCGAAGATCCTAATGCAACTGGTGGTTTGAAGCTGCTAAGGCGAGGGATGGTGACAATGAATCGCATTACAAGGCGACTCATCAGAGGGAGAAAGCTAACCATACAGATTAATGATAAGGGGGAACCTTATGGTAAGGCTGCAAAAGAAATGCAGTCTTACATTGGGGTCTTAGCACGTACAAAGATCTCGATTGTCACTGGTGATTGGAGAGAGGTGGACCCTGAGGAAAAACAGAAAATCTGGGAATCTATTATGGATGCATATGTGATCCCTAAAGAATGTAAGAAGCTGGTGATTACCTCTGCTGCAAATAAATGGAGGGAATTTAAAAGCAAATTGACCAACAAGTACATTATCCCTTATATGGATACCCCTGAATTGCTTGAAAATCCACCGGATGATTATCGATGTGTTAAGAAGGCTGATTGGGATATCTTTGTCGCTGACAGGATTTCAGCAAAATTCCAGGAACTGCGTGATGCACAAATAGAAAAAAGAAAGGAAAATCGGTACCCTCATCGTATGGCACGTAAAGGATATGCTAACTTAGAAGCCGAACTGTCCGAGTCAATCCCCTCACAGAAACTGGATCGTGCGACGATGTGGGTGAAGGCACGGCAAGATAAGAATGGCTGCTTCAAAGAACCTGAGGTGGAGGAGACGGCAGAAAGAATTGAAAGGTTAAAGAAAAAGGAGTCTGACGGAGAGCTTACAACAGATGGTTCAGATGATGTGCTCACCTTAGCATTGGGGAAACCAGAGCATCCTGGGAGGGTACGAGGCGTTGGTGGTTTCACCAAACCAGCTTCATACTTTAACCTCCCAAAAAGCAGAAAGAAAAGTGTGGAAGAGACTTTGAGGAAGAGTGTGAAGTTGATTTTGGAGGAGGAGAAGGAAAGTATAGTCGCTAAGGAAAGAGTTGCATGGGAACAAGAGAGAGATACACAAGTTGCTGAGGAAAGAGCATATTGGACAGCCAAGATTGCGAGGTTGGAAGCAAAAATTGATGGGAAGGAGGTGCCACTAGAGTCACCAGAGTCACCAAAACAATTGACGCCACTTCATGAACATGGTTCAGGCCAAGGGAGCTGTTCCCGACCAGCTGAGAAGATTTTGATTGACATTGTGGAAGGTGATGGCAAAACAGTGAAGAAGAAGTTGGTTTTAGCCGAGGAGAAGATATTTGTTCAAGAGGACCAGCAAGTGGCTACAGATCAACCAATGCAGAAACTAACTTCTATAATTGAAGAGGAGGTTAGAGTCCACATATCTTCGAAAAATTCTGACAATGAGCTGCAGGTTGATGGGAACGACTGCGGACTGGCAATAGACAGGGTCGAAAATATTGTTGCTTATGGTACTGTCATTCAAGTTAATGTTGAGGAAGGCAATCAGAAGATCCATGGGGTTCCATTAGGAGAGGACAATGTGCGTGTCTCAGTCATTGGAACCATTGTGCATGATGCCTTGCTACCATTTCCAGTGAAGGATGCTGACATAGTCACTGTCGGAGACGCCATTGGGACTTGTGTTGCTTGGCCAAGAAAGCTAGTTGTTATCCCTGCACCAGAGGCACCCCCTAAACCCATTGAGCAGAAAATAACAAAGCGTGCTAATCCGAAGAAGAGAATCAGAGATTCATTTGATGATGACAATGAAGACCTGGAAAACTTGCCGACGAATCTGCCATTACCAGTAAAGGACTTGTGTATGTGGGCCAAGACTGAATTGATGGATGGCGCCACAATCCACACAACATTTGGTGGGGAAATTTTCGGCCATTCTAGGAAAGCAGTCATCTTTAGAAGGGATATCTATAACATGGCTAACATGCTGGAAGTATCTGGAGGAGTCATTGTTTTTTACATGAGCTACATTTATGGAGTCCTGAAGAAGTCTAAGATGCTTGATATGGTTGGCTTTATGGACCCTGCACACACCGGTATAATTGGGTGTGGAAATCCCACTGAACGGGCACGGTCTATGTCAAATCGGTACATGTTAGGGAAACCGGGGCAAATATTTTTGGTTCCATATAACTCGGGTGCTCATTGGATGTTGTCGGTGGTGAACCCGGATGAAGAAGCCGTGCATTTCATGGATCCGCTAAAAAGGCGACTTTGTGCTGGTGAATGGAAAATTATTGTCGACAACTCTATTAAAATCTTCAATGCCCAAAAGGGTAGGAAAGGAAGGAAAATAATCCAATGGAAGAATCTTGCTGGTATTCCGGAGCAAACTGATTCTAAGACTTGTGGTTATTTTGTCATGCGTTATATGAAAGAAATTGTGGAGGACAAGAACTTGGAGTTTGCTACCAAGTGGGAAAGGAAATCAAATCTTGCTTACACACAGAAGGATATTGATGTGGTTCGAGCTGAATGGGCAAATCATGTTATGAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

903

Amino Acids

101.82

Weight (kDa)

9.34

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	242 - 369	6.8e-11	Plant transposase (Ptta/En/Spm family)
DUF8039	PF26133	539 - 621	3.8e-13	Domain of unknown function (DUF8039)
Peptidase_C48	PF02902	775 - 897	4.4e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18030 AT2G18030
fragaria_vesca	FvH4_6g24560 FvH4_6g24560 FvH4_6g24560
prunus_persica	Prupe.1G202800_v2.0.a1 Prupe.1G202800_v2.0.a1
pyrus_communis	pycom04g04120
rosa_chinensis	RchiOBHm_Chr0c32g0501631 RchiOBHm_Chr0c32g0501641 RchiOBHm_Chr3g0483661 RchiOBHm_Chr3g0483821
rosa_laevigata	RLG00000023260
rosa_multiflora	Rmu_co8365169.1_g000001 Rmu_sc0008673.1_g000006
rosa_roxburghii	Rroxscaffold_6G00398140
rosa_rugosa	Rorug03G0208100
rosa_samantha	Rh3AG256300 Rh3AG256900 Rh3BG293000 Rh3CG290800 Rh3DG286600
rosa_wichuraiana	Rw0G012010 Rw3G023150 Rw3G023210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1591
Acc65I	GGTACC	1 cut(s)	813
AccB1I	GGYRCC	5 cut(s)	4, 813, 1321, 1876, 2042
AccB7I	CCANNNNNTGG	1 cut(s)	1507
AccI	GTMKAC	1 cut(s)	2451
AccIII	TCCGGA	1 cut(s)	2533
AciI	CCGC	2 cut(s)	1620, 2408
AclWI	GGATC	7 cut(s)	195, 302, 565, 900, 1696, 2399, 2412
AcoI	YGGCCR	2 cut(s)	1841, 2080
AcsI	RAATTY	4 cut(s)	626, 764, 1582, 2073
AcuI	CTGAAG	1 cut(s)	2213
AcyI	GRCGYC	4 cut(s)	5, 1358, 1818, 2043
AfaI	GTAC	6 cut(s)	481, 653, 815, 1080, 1663, 2300
AfiI	CCNNNNNNNGG	3 cut(s)	667, 1507, 2274
AflIII	ACRYGT	1 cut(s)	2301
AgeI	ACCGGT	1 cut(s)	2243
AgsI	TTSAA	8 cut(s)	331, 689, 943, 980, 1493, 1550, 1673, 2473
AjnI	CCWGG	3 cut(s)	768, 1069, 1965
AjuI	GAANNNNNNNTTGG	4 cut(s)	1166, 1198, 1445, 1477
Alw21I	GWGCWC	2 cut(s)	1041, 2353
Alw26I	GTCTC	5 cut(s)	123, 956, 1148, 1744, 1809
AlwI	GGATC	7 cut(s)	195, 302, 565, 900, 1696, 2399, 2412
AlwNI	CAGNNNCTG	2 cut(s)	775, 889
Ama87I	CYCGRG	1 cut(s)	2344
Aor13HI	TCCGGA	1 cut(s)	2533
AoxI	GGCC	5 cut(s)	92, 1381, 1841, 2019, 2080
ApeKI	GCWGC	8 cut(s)	20, 23, 26, 334, 440, 608, 936, 1597
ApoI	RAATTY	4 cut(s)	626, 764, 1582, 2073
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AseI	ATTAAT	1 cut(s)	411
AsiGI	ACCGGT	1 cut(s)	2243
Asp700I	GAANNNNTTC	1 cut(s)	265
Asp718I	GGTACC	1 cut(s)	813
AspLEI	GCGC	2 cut(s)	7, 2045
AspS9I	GGNCC	5 cut(s)	92, 520, 1498, 2019, 2230
AsuC2I	CCSGG	2 cut(s)	2316, 2378
AsuII	TTCGAA	1 cut(s)	1577
AvaI	CYCGRG	1 cut(s)	2344
AvaII	GGWCC	3 cut(s)	520, 1498, 2230
AxyI	CCTNAGG	2 cut(s)	525, 951
BaeGI	GKGCMC	1 cut(s)	2281
BaeI	ACNNNNGTAYC	2 cut(s)	1236, 1269
BalI	TGGCCA	1 cut(s)	1843
BamHI	GGATCC	1 cut(s)	2404
BanI	GGYRCC	5 cut(s)	4, 813, 1321, 1876, 2042
BbsI	GAAGAC	3 cut(s)	200, 221, 1968
Bbv12I	GWGCWC	2 cut(s)	1041, 2353
BbvCI	CCTCAGC	1 cut(s)	1257
BbvI	GCAGC	8 cut(s)	32, 35, 38, 321, 427, 595, 923, 1584
BccI	CCATC	8 cut(s)	16, 343, 1016, 1304, 1433, 1601, 2029, 2033
BceAI	ACGGC	4 cut(s)	79, 935, 981, 2375
BcgI	CGANNNNNNTGC	2 cut(s)	1969, 2003
BciT130I	CCWGG	3 cut(s)	770, 1071, 1967
BciVI	GTATCC	1 cut(s)	664
BcnI	CCSGG	2 cut(s)	2316, 2378
BcoDI	GTCTC	5 cut(s)	123, 956, 1148, 1744, 1809
BfaI	CTAG	5 cut(s)	75, 198, 1328, 1853, 2088
BfmI	CTRYAG	2 cut(s)	1512, 1598
BfoI	RGCGCY	2 cut(s)	8, 2046
BfuAI	ACCTGC	1 cut(s)	1591
BfuI	GTATCC	1 cut(s)	664
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	8 cut(s)	21, 24, 27, 335, 441, 609, 937, 1598
BlsI	GCNGC	8 cut(s)	22, 25, 28, 336, 442, 610, 938, 1599
Bme1390I	CCNGG	5 cut(s)	770, 1071, 1967, 2316, 2378
Bme18I	GGWCC	3 cut(s)	520, 1498, 2230
BmeT110I	CYCGRG	1 cut(s)	2344
BmgT120I	GGNCC	5 cut(s)	92, 520, 1498, 2019, 2230
BmrFI	CCNGG	5 cut(s)	770, 1071, 1967, 2316, 2378
BmsI	GCATC	7 cut(s)	76, 550, 772, 1075, 1756, 1783, 2196
BpiI	GAAGAC	3 cut(s)	200, 221, 1968
BpmI	CTGGAG	1 cut(s)	2169
Bpu10I	CCTNAGC	4 cut(s)	338, 1045, 1212, 1257
Bpu14I	TTCGAA	1 cut(s)	1577
BpuMI	CCSGG	2 cut(s)	2316, 2378
Bsa29I	ATCGAT	1 cut(s)	709
BsaAI	YACGTR	2 cut(s)	479, 833
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	4 cut(s)	5, 1358, 1818, 2043
BsaJI	CCNNGG	5 cut(s)	1070, 1384, 1473, 1705, 2315
BsaWI	WCCGGW	3 cut(s)	697, 2243, 2533
BsaXI	ACNNNNNCTCC	2 cut(s)	2145, 2175
Bsc4I	CCNNNNNNNGG	3 cut(s)	667, 1507, 2274
Bse118I	RCCGGY	1 cut(s)	2243
Bse1I	ACTGG	6 cut(s)	325, 505, 894, 1629, 1784, 1997
Bse21I	CCTNAGG	2 cut(s)	525, 951
Bse8I	GATNNNNATC	1 cut(s)	705
BseAI	TCCGGA	1 cut(s)	2533
BseBI	CCWGG	3 cut(s)	770, 1071, 1967
BseCI	ATCGAT	1 cut(s)	709
BseDI	CCNNGG	5 cut(s)	1070, 1384, 1473, 1705, 2315
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	3 cut(s)	667, 1507, 2274
BseMII	CTCAG	5 cut(s)	516, 942, 1248, 1398, 1755
BseNI	ACTGG	6 cut(s)	325, 505, 894, 1629, 1784, 1997
BseRI	GAGGAG	6 cut(s)	974, 1202, 1205, 1490, 1568, 2166
BseSI	GKGCMC	1 cut(s)	2281
BseXI	GCAGC	8 cut(s)	32, 35, 38, 321, 427, 595, 923, 1584
BsgI	GTGCAG	2 cut(s)	1851, 2220
BshFI	GGCC	5 cut(s)	94, 1383, 1843, 2021, 2082
BshNI	GGYRCC	5 cut(s)	4, 813, 1321, 1876, 2042
BshTI	ACCGGT	1 cut(s)	2243
BshVI	ATCGAT	1 cut(s)	709
BsiHKAI	GWGCWC	2 cut(s)	1041, 2353
BsiHKCI	CYCGRG	1 cut(s)	2344
BsiSI	CCGG	5 cut(s)	698, 2244, 2315, 2378, 2534
BslFI	GGGAC	2 cut(s)	145, 1840
BslI	CCNNNNNNNGG	3 cut(s)	667, 1507, 2274
BsmAI	GTCTC	5 cut(s)	123, 956, 1148, 1744, 1809
BsmBI	CGTCTC	2 cut(s)	956, 1809
BsmFI	GGGAC	2 cut(s)	145, 1840
BsnI	GGCC	5 cut(s)	94, 1383, 1843, 2021, 2082
BsoBI	CYCGRG	1 cut(s)	2344
Bsp119I	TTCGAA	1 cut(s)	1577
Bsp1286I	GDGCHC	3 cut(s)	1041, 2281, 2353
Bsp13I	TCCGGA	1 cut(s)	2533
Bsp143I	GATC	8 cut(s)	200, 307, 486, 570, 892, 1516, 1701, 2404
Bsp19I	CCATGG	1 cut(s)	1705
BspACI	CCGC	2 cut(s)	1620, 2408
BspANI	GGCC	5 cut(s)	94, 1383, 1843, 2021, 2082
BspCNI	CTCAG	5 cut(s)	517, 943, 1249, 1399, 1754
BspDI	ATCGAT	1 cut(s)	709
BspEI	TCCGGA	1 cut(s)	2533
BspHI	TCATGA	1 cut(s)	1366
BspMAI	CTGCAG	1 cut(s)	1602
BspMI	ACCTGC	1 cut(s)	1591
BspPI	GGATC	7 cut(s)	195, 302, 565, 900, 1696, 2399, 2412
BspT104I	TTCGAA	1 cut(s)	1577
BspT107I	GGYRCC	5 cut(s)	4, 813, 1321, 1876, 2042
BsrFI	RCCGGY	1 cut(s)	2243
BsrI	ACTGG	6 cut(s)	325, 505, 894, 1629, 1784, 1997
BssAI	RCCGGY	1 cut(s)	2243
BssECI	CCNNGG	5 cut(s)	1070, 1384, 1473, 1705, 2315
BssMI	GATC	8 cut(s)	200, 307, 486, 570, 892, 1516, 1701, 2404
BssNI	GRCGYC	4 cut(s)	5, 1358, 1818, 2043
BssT1I	CCWWGG	2 cut(s)	1384, 1705
Bst2UI	CCWGG	3 cut(s)	770, 1071, 1967
Bst4CI	ACNGT	5 cut(s)	864, 1450, 1666, 1810, 2283
Bst6I	CTCTTC	5 cut(s)	122, 1146, 1160, 1545, 1922
BstACI	GRCGYC	4 cut(s)	5, 1358, 1818, 2043
BstBAI	YACGTR	2 cut(s)	479, 833
BstBI	TTCGAA	1 cut(s)	1577
BstC8I	GCNNGC	1 cut(s)	1914
BstDSI	CCRYGG	1 cut(s)	1705
BstH2I	RGCGCY	2 cut(s)	8, 2046
BstHHI	GCGC	2 cut(s)	7, 2045
BstKTI	GATC	8 cut(s)	203, 310, 489, 573, 895, 1519, 1704, 2407
BstMAI	GTCTC	5 cut(s)	123, 956, 1148, 1744, 1809
BstMBI	GATC	8 cut(s)	200, 307, 486, 570, 892, 1516, 1701, 2404
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 32, 340, 1286, 1389, 1849, 1874, 2416, 2687
BstNI	CCWGG	3 cut(s)	770, 1071, 1967
BstNSI	RCATGY	2 cut(s)	2137, 2305
BstSCI	CCNGG	5 cut(s)	768, 1069, 1965, 2314, 2376
BstSFI	CTRYAG	2 cut(s)	1512, 1598
BstSLI	GKGCMC	1 cut(s)	2281
BstV1I	GCAGC	8 cut(s)	32, 35, 38, 321, 427, 595, 923, 1584
BstV2I	GAAGAC	3 cut(s)	200, 221, 1968
BstX2I	RGATCY	5 cut(s)	200, 307, 486, 1701, 2404
BstYI	RGATCY	5 cut(s)	200, 307, 486, 1701, 2404
Bsu15I	ATCGAT	1 cut(s)	709
Bsu36I	CCTNAGG	2 cut(s)	525, 951
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	5 cut(s)	94, 1383, 1843, 2021, 2082
BsuTUI	ATCGAT	1 cut(s)	709
BtgI	CCRYGG	1 cut(s)	1705
BtsIMutI	CAGTG	5 cut(s)	498, 1455, 1791, 1806, 2268
BveI	ACCTGC	1 cut(s)	1591
Cac8I	GCNNGC	1 cut(s)	1914
CaiI	CAGNNNCTG	2 cut(s)	775, 889
CciI	TCATGA	1 cut(s)	1366
CfoI	GCGC	2 cut(s)	7, 2045
Cfr10I	RCCGGY	1 cut(s)	2243
Cfr13I	GGNCC	5 cut(s)	92, 520, 1498, 2019, 2230
ClaI	ATCGAT	1 cut(s)	709
CseI	GACGC	2 cut(s)	1366, 1826
Csp6I	GTAC	6 cut(s)	480, 652, 814, 1079, 1662, 2299
CspAI	ACCGGT	1 cut(s)	2243
CviQI	GTAC	6 cut(s)	480, 652, 814, 1079, 1662, 2299
DinI	GGCGCC	2 cut(s)	6, 2044
DpnI	GATC	8 cut(s)	202, 309, 488, 572, 894, 1518, 1703, 2406
DpnII	GATC	8 cut(s)	200, 307, 486, 570, 892, 1516, 1701, 2404
DraI	TTTAAA	1 cut(s)	631
EaeI	YGGCCR	2 cut(s)	1841, 2080
Eam1104I	CTCTTC	5 cut(s)	122, 1146, 1160, 1545, 1922
EarI	CTCTTC	5 cut(s)	122, 1146, 1160, 1545, 1922
Eco130I	CCWWGG	2 cut(s)	1384, 1705
Eco32I	GATATC	3 cut(s)	301, 736, 2116
Eco47I	GGWCC	3 cut(s)	520, 1498, 2230
Eco57I	CTGAAG	1 cut(s)	2213
Eco81I	CCTNAGG	2 cut(s)	525, 951
Eco88I	CYCGRG	1 cut(s)	2344
EcoRII	CCWGG	3 cut(s)	768, 1069, 1965
EcoRV	GATATC	3 cut(s)	301, 736, 2116
EcoT14I	CCWWGG	2 cut(s)	1384, 1705
EcoT22I	ATGCAT	1 cut(s)	565
EgeI	GGCGCC	2 cut(s)	6, 2044
EheI	GGCGCC	2 cut(s)	6, 2044
ErhI	CCWWGG	2 cut(s)	1384, 1705
Esp3I	CGTCTC	2 cut(s)	956, 1809
FaqI	GGGAC	2 cut(s)	145, 1840
FauNDI	CATATG	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	2451
Fnu4HI	GCNGC	8 cut(s)	21, 24, 27, 335, 441, 609, 937, 1598
Fsp4HI	GCNGC	8 cut(s)	21, 24, 27, 335, 441, 609, 937, 1598
FspBI	CTAG	5 cut(s)	75, 198, 1328, 1853, 2088
GlaI	GCGC	2 cut(s)	6, 2044
GluI	GCNGC	8 cut(s)	21, 24, 27, 335, 441, 609, 937, 1598
GsuI	CTGGAG	1 cut(s)	2169
HaeII	RGCGCY	2 cut(s)	8, 2046
HaeIII	GGCC	5 cut(s)	94, 1383, 1843, 2021, 2082
HapII	CCGG	5 cut(s)	698, 2244, 2315, 2378, 2534
HgaI	GACGC	2 cut(s)	1366, 1826
HhaI	GCGC	2 cut(s)	7, 2045
Hin1I	GRCGYC	4 cut(s)	5, 1358, 1818, 2043
Hin6I	GCGC	2 cut(s)	5, 2043
HinP1I	GCGC	2 cut(s)	5, 2043
HincII	GTYRAC	2 cut(s)	99, 2452
HindII	GTYRAC	2 cut(s)	99, 2452
HindIII	AAGCTT	1 cut(s)	111
HpaII	CCGG	5 cut(s)	698, 2244, 2315, 2378, 2534
Hpy166II	GTNNAC	5 cut(s)	99, 520, 1567, 2374, 2452
Hpy188III	TCNNGA	8 cut(s)	258, 490, 1367, 1398, 1493, 2148, 2191, 2534
Hpy8I	GTNNAC	5 cut(s)	99, 520, 1567, 2374, 2452
Hpy99I	CGWCG	2 cut(s)	904, 1984
HpyCH4III	ACNGT	5 cut(s)	864, 1450, 1666, 1810, 2283
HpyCH4IV	ACGT	2 cut(s)	478, 832
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 32, 340, 1286, 1389, 1849, 1874, 2416, 2687
HpySE526I	ACGT	2 cut(s)	478, 832
Hsp92I	GRCGYC	4 cut(s)	5, 1358, 1818, 2043
HspAI	GCGC	2 cut(s)	5, 2043
KasI	GGCGCC	2 cut(s)	4, 2042
Kpn2I	TCCGGA	1 cut(s)	2533
KpnI	GGTACC	1 cut(s)	817
Kzo9I	GATC	8 cut(s)	200, 307, 486, 570, 892, 1516, 1701, 2404
LmnI	GCTCC	2 cut(s)	1389, 2536
Lsp1109I	GCAGC	8 cut(s)	32, 35, 38, 321, 427, 595, 923, 1584
LweI	GCATC	7 cut(s)	76, 550, 772, 1075, 1756, 1783, 2196
MaeI	CTAG	5 cut(s)	75, 198, 1328, 1853, 2088
MaeII	ACGT	2 cut(s)	478, 832
MaeIII	GTNAC	5 cut(s)	352, 496, 1332, 1341, 1804
MalI	GATC	8 cut(s)	202, 309, 488, 572, 894, 1518, 1703, 2406
MboI	GATC	8 cut(s)	200, 307, 486, 570, 892, 1516, 1701, 2404
MfeI	CAATTG	1 cut(s)	1352
MflI	RGATCY	5 cut(s)	200, 307, 486, 1701, 2404
MhlI	GDGCHC	3 cut(s)	1041, 2281, 2353
MlsI	TGGCCA	1 cut(s)	1843
MluNI	TGGCCA	1 cut(s)	1843
Mly113I	GGCGCC	2 cut(s)	5, 2043
MlyI	GAGTC	8 cut(s)	372, 878, 1007, 1340, 1349, 1572, 2163, 2196
MmeI	TCCRAC	2 cut(s)	1275, 1792
Mox20I	TGGCCA	1 cut(s)	1843
Mph1103I	ATGCAT	1 cut(s)	565
MroI	TCCGGA	1 cut(s)	2533
MroXI	GAANNNNTTC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	1843
MseI	TTAA	7 cut(s)	411, 630, 717, 986, 1119, 1677, 2463
MslI	CAYNNNNRTG	1 cut(s)	1371
Msp20I	TGGCCA	1 cut(s)	1843
MspA1I	CMGCKG	1 cut(s)	1406
MspI	CCGG	5 cut(s)	698, 2244, 2315, 2378, 2534
MspR9I	CCNGG	5 cut(s)	770, 1071, 1967, 2316, 2378
MunI	CAATTG	1 cut(s)	1352
MvaI	CCWGG	3 cut(s)	770, 1071, 1967
MwoI	GCNNNNNNNGC	9 cut(s)	26, 32, 340, 1286, 1389, 1849, 1874, 2416, 2687
NarI	GGCGCC	2 cut(s)	5, 2043
NciI	CCSGG	2 cut(s)	2316, 2378
NcoI	CCATGG	1 cut(s)	1705
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	8 cut(s)	200, 307, 486, 570, 892, 1516, 1701, 2404
NmeAIII	GCCGAG	1 cut(s)	1498
NmuCI	GTSAC	5 cut(s)	352, 496, 1332, 1341, 1804
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	2 cut(s)	2137, 2305
NspV	TTCGAA	1 cut(s)	1577
PagI	TCATGA	1 cut(s)	1366
PciI	ACATGT	1 cut(s)	2301
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	7 cut(s)	361, 548, 1932, 1940, 1984, 2518, 2546
PflFI	GACNNNGTC	3 cut(s)	253, 1637, 1802
PflMI	CCANNNNNTGG	1 cut(s)	1507
PfoI	TCCNGGA	1 cut(s)	768
PinAI	ACCGGT	1 cut(s)	2243
PkrI	GCNGC	8 cut(s)	22, 25, 28, 336, 442, 610, 938, 1599
PleI	GAGTC	8 cut(s)	372, 877, 1006, 1339, 1348, 1571, 2162, 2195
PluTI	GGCGCC	2 cut(s)	8, 2046
PpsI	GAGTC	8 cut(s)	372, 877, 1006, 1339, 1348, 1571, 2162, 2195
Ppu21I	YACGTR	2 cut(s)	479, 833
PscI	ACATGT	1 cut(s)	2301
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	3 cut(s)	768, 1069, 1965
PspGI	CCWGG	3 cut(s)	768, 1069, 1965
PspPI	GGNCC	5 cut(s)	92, 520, 1498, 2019, 2230
PstI	CTGCAG	1 cut(s)	1602
PstNI	CAGNNNCTG	2 cut(s)	775, 889
PsuI	RGATCY	5 cut(s)	200, 307, 486, 1701, 2404
PsyI	GACNNNGTC	3 cut(s)	253, 1637, 1802
PvuII	CAGCTG	1 cut(s)	1406
RsaI	GTAC	6 cut(s)	481, 653, 815, 1080, 1663, 2300
RsaNI	GTAC	6 cut(s)	480, 652, 814, 1079, 1662, 2299
RseI	CAYNNNNRTG	1 cut(s)	1371
SalI	GTCGAC	1 cut(s)	2450
SaqAI	TTAA	7 cut(s)	411, 630, 717, 986, 1119, 1677, 2463
SatI	GCNGC	8 cut(s)	21, 24, 27, 335, 441, 609, 937, 1598
Sau3AI	GATC	8 cut(s)	200, 307, 486, 570, 892, 1516, 1701, 2404
Sau96I	GGNCC	5 cut(s)	92, 520, 1498, 2019, 2230
SchI	GAGTC	8 cut(s)	372, 878, 1007, 1340, 1349, 1572, 2163, 2196
ScrFI	CCNGG	5 cut(s)	770, 1071, 1967, 2316, 2378
SduI	GDGCHC	3 cut(s)	1041, 2281, 2353
SfaNI	GCATC	7 cut(s)	76, 550, 772, 1075, 1756, 1783, 2196
SfcI	CTRYAG	2 cut(s)	1512, 1598
SfoI	GGCGCC	2 cut(s)	6, 2044
SfuI	TTCGAA	1 cut(s)	1577
SinI	GGWCC	3 cut(s)	520, 1498, 2230
SmiMI	CAYNNNNRTG	1 cut(s)	1371
SsiI	CCGC	2 cut(s)	1620, 2408
SspDI	GGCGCC	2 cut(s)	4, 2042
SspI	AATATT	2 cut(s)	1648, 2325
SspMI	CTAG	5 cut(s)	75, 198, 1328, 1853, 2088
StyD4I	CCNGG	5 cut(s)	768, 1069, 1965, 2314, 2376
StyI	CCWWGG	2 cut(s)	1384, 1705
TaaI	ACNGT	5 cut(s)	864, 1450, 1666, 1810, 2283
TaiI	ACGT	2 cut(s)	481, 835
TaqI	TCGA	7 cut(s)	303, 491, 709, 1577, 1641, 2451, 2677
TatI	WGTACW	1 cut(s)	651
TfiI	GAWTC	7 cut(s)	361, 548, 1932, 1940, 1984, 2518, 2546
Tru1I	TTAA	7 cut(s)	411, 630, 717, 986, 1119, 1677, 2463
Tru9I	TTAA	7 cut(s)	411, 630, 717, 986, 1119, 1677, 2463
TscAI	CASTG	5 cut(s)	505, 1455, 1791, 1813, 2275
TseFI	GTSAC	5 cut(s)	352, 496, 1332, 1341, 1804
TseI	GCWGC	8 cut(s)	20, 23, 26, 334, 440, 608, 936, 1597
Tsp45I	GTSAC	5 cut(s)	352, 496, 1332, 1341, 1804
TspGWI	ACGGA	1 cut(s)	1020
TspRI	CASTG	5 cut(s)	505, 1455, 1791, 1813, 2275
Tth111I	GACNNNGTC	3 cut(s)	253, 1637, 1802
Van91I	CCANNNNNTGG	1 cut(s)	1507
VpaK11BI	GGWCC	3 cut(s)	520, 1498, 2230
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	4 cut(s)	626, 764, 1582, 2073
XceI	RCATGY	2 cut(s)	2137, 2305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2060
XmiI	GTMKAC	1 cut(s)	2451
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	5 cut(s)	75, 198, 1328, 1853, 2088
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.