Rmu_co8365169.1_g000001

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8365169.1
OG0007363
Physical Location & Seq
Forward (+)
1 .. 1098
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8365169.1_g000001.1.cds

Sequence Viewer

Length: 388 bp
gtggtatatgatgaaaggctaatcagcttcaggcaacttttggaggttttctggtctagtcatgattatagacaagtatttgggcaaggtcctgatgtgggtaatcaatacagatctatcatttttacgaatggaactgaagggtctagattggcttctgtaagcaaagggagagagcagactaagtcaaagagcagcattgtcactactcaaatccaaccacttggaacattttatcctgctgagcctgagcatcagaagtttgagctgaagcgcaggccattccttcttcaactaatgggaaacctgcctgaagaggaacttgagaggtcacatttggcagcgaaactgaatagctatgccgcagagctttgccctccaaatattc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

129

Amino Acids

14.76

Weight (kDa)

7.01

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 315
AciI CCGC 1 cut(s) 363
AcuI CTGAAG 4 cut(s) 13, 159, 290, 333
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 293
AloI GAACNNNNNNTCC 2 cut(s) 220, 252
AluBI AGCT 4 cut(s) 27, 268, 357, 370
AluI AGCT 4 cut(s) 27, 268, 357, 370
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 195, 341
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 89
AvaII GGWCC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 207, 353
BfaI CTAG 2 cut(s) 57, 147
BfuAI ACCTGC 1 cut(s) 315
BglII AGATCT 1 cut(s) 113
BisI GCNGC 3 cut(s) 196, 342, 363
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 3 cut(s) 197, 343, 364
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmsI GCATC 1 cut(s) 262
Bpu10I CCTNAGC 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 2 cut(s) 234, 240
BseXI GCAGC 2 cut(s) 207, 353
BshFI GGCC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 1 cut(s) 280
Bsp143I GATC 1 cut(s) 113
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 1 cut(s) 363
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 2 cut(s) 235, 241
BspHI TCATGA 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 315
BssMI GATC 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 278
BstDEI CTNAG 3 cut(s) 183, 243, 249
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 1 cut(s) 116
BstMBI GATC 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 207, 353
BstX2I RGATCY 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 224
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 280
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 278
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 89
CviAII CATG 1 cut(s) 62
CviJI RGCY 8 cut(s) 19, 27, 155, 247, 268, 280, 357, 370
CviKI_1 RGCY 8 cut(s) 19, 27, 155, 247, 268, 280, 357, 370
DdeI CTNAG 3 cut(s) 183, 243, 249
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 4 cut(s) 13, 159, 290, 333
EcoO109I RGGNCCY 1 cut(s) 89
FaeI CATG 1 cut(s) 65
FaiI YATR 5 cut(s) 7, 9, 63, 69, 360
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 196, 342, 363
Fsp4HI GCNGC 3 cut(s) 196, 342, 363
FspBI CTAG 2 cut(s) 57, 147
GlaI GCGC 1 cut(s) 275
GluI GCNGC 3 cut(s) 196, 342, 363
HaeIII GGCC 1 cut(s) 280
HhaI GCGC 1 cut(s) 276
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 3 cut(s) 62, 92, 147
HpyAV CCTTC 2 cut(s) 134, 296
HpyF3I CTNAG 3 cut(s) 183, 243, 249
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 1 cut(s) 274
Kzo9I GATC 1 cut(s) 113
LpnPI CCDG 8 cut(s) 16, 37, 105, 252, 261, 262, 320, 324
Lsp1109I GCAGC 2 cut(s) 207, 353
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 57, 147
MaeIII GTNAC 2 cut(s) 202, 330
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 2 cut(s) 281, 326
MflI RGATCY 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 4 cut(s) 37, 310, 321, 387
NdeII GATC 1 cut(s) 113
NlaIII CATG 1 cut(s) 65
NmuCI GTSAC 2 cut(s) 202, 330
PagI TCATGA 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 197, 343, 364
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
PsuI RGATCY 1 cut(s) 113
PsyI GACNNNGTC 1 cut(s) 184
SatI GCNGC 3 cut(s) 196, 342, 363
Sau3AI GATC 1 cut(s) 113
Sau96I GGNCC 1 cut(s) 89
SetI ASST 8 cut(s) 29, 48, 91, 270, 309, 332, 359, 372
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SsiI CCGC 1 cut(s) 363
SspI AATATT 1 cut(s) 385
SspMI CTAG 2 cut(s) 57, 147
TauI GCSGC 1 cut(s) 365
TseFI GTSAC 2 cut(s) 202, 330
TseI GCWGC 2 cut(s) 195, 341
Tsp45I GTSAC 2 cut(s) 202, 330
TspDTI ATGAA 1 cut(s) 27
Tth111I GACNNNGTC 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 89
XbaI TCTAGA 1 cut(s) 146
XspI CTAG 2 cut(s) 57, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.