Rw3G023210

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0007363
Physical Location & Seq
Reverse (-)
29024869 .. 29026466
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023210.1

Sequence Viewer

Length: 723 bp
ATGGCTATTATTTGCAGCAACATTTCCCTTAGCCGTGTATTAACAACGCTCGTGCTTATGACAATTCTAGCGGCTGAGAAACGGGTGTGCATCCGGATCCCAGATCAGATCACTGAAACTACAAGGCTAGGGATCCACCCAACGACCAGCCCCTTTTGGAGGTCCAAAGCTGTGTTCGGGTGCTTGAATGGGGTTCTTCAGGCCACTGTTGGTTATGCTGGTGGATCCAAAACCAATCCTGAGTACAGAAGTTTGGGTGATCATGCCGAGTCTGTGCAGGTGGTATATGATGAAAGGCTAATCAGCTTCAGGCAACTTTTGGAGGTTTTCTGGTCTAGTCATGATTATAGACAAGTATTTGGGCAAGGTCCTGATGTGGGTAATCAATACAGATCTATCATTTTTACGAATGGAACTGAAGAGTCTAGATTGGCTTCTGTAAGCAAAGGGAGAGAGCAGACTAAGTCAAAGAGCAGCATTGTCACTACTCAAATCCAACCACTTGGAACATTTTATCCTGCTGAGCCTGAGCATCAGAAGTTTGAGCTGAAGCGCAGGCCATTCCTTCTTCAACTAATGGGAAACCTGCCTGAAGAGGAACTTGAGAGGTCACATTTGGCAGCGAAACTGAATAGCTATGCCGCAGAGCTTTGCCCTCCAAATATTCAGAAGAAGATTGATGTAAAGATCAACGAGATTATTAAAAAAGATGGCCAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

240

Amino Acids

27.01

Weight (kDa)

8.84

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 52 - 184 1e-38 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 268
Acc36I ACCTGC 2 cut(s) 268, 594
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 2 cut(s) 71, 642
AclWI GGATC 6 cut(s) 91, 104, 127, 140, 219, 232
AcoI YGGCCR 1 cut(s) 712
AcuI CTGAAG 5 cut(s) 182, 292, 438, 569, 612
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 159, 377
AgsI TTSAA 2 cut(s) 187, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AloI GAACNNNNNNTCC 2 cut(s) 499, 531
AluBI AGCT 5 cut(s) 170, 306, 547, 636, 649
AluI AGCT 5 cut(s) 170, 306, 547, 636, 649
AlwI GGATC 6 cut(s) 91, 104, 127, 140, 219, 232
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 3 cut(s) 201, 557, 712
ApeKI GCWGC 3 cut(s) 15, 474, 620
AspLEI GCGC 1 cut(s) 555
AspS9I GGNCC 2 cut(s) 162, 368
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 2 cut(s) 162, 368
BalI TGGCCA 1 cut(s) 714
BamHI GGATCC 3 cut(s) 96, 132, 224
BauI CACGAG 1 cut(s) 50
BbvI GCAGC 3 cut(s) 27, 486, 632
BccI CCATC 1 cut(s) 704
BceAI ACGGC 1 cut(s) 18
BclI TGATCA 1 cut(s) 259
BfaI CTAG 4 cut(s) 68, 128, 336, 426
BfuAI ACCTGC 2 cut(s) 268, 594
BglII AGATCT 1 cut(s) 392
BisI GCNGC 5 cut(s) 16, 72, 475, 621, 642
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 5 cut(s) 17, 73, 476, 622, 643
Bme18I GGWCC 2 cut(s) 162, 368
BmgT120I GGNCC 2 cut(s) 162, 368
BmiI GGNNCC 3 cut(s) 98, 134, 226
BmsI GCATC 2 cut(s) 99, 541
Bpu10I CCTNAGC 2 cut(s) 29, 528
Bpu1102I GCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 623
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 377
BseAI TCCGGA 1 cut(s) 93
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 159, 377
BseMII CTCAG 4 cut(s) 66, 231, 513, 519
BseXI GCAGC 3 cut(s) 27, 486, 632
BsgI GTGCAG 1 cut(s) 296
BshFI GGCC 3 cut(s) 203, 559, 714
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 159, 377
BsnI GGCC 3 cut(s) 203, 559, 714
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 8 cut(s) 96, 103, 108, 132, 224, 259, 392, 687
Bsp1720I GCTNAGC 1 cut(s) 522
BspACI CCGC 2 cut(s) 71, 642
BspANI GGCC 3 cut(s) 203, 559, 714
BspCNI CTCAG 4 cut(s) 67, 232, 514, 520
BspEI TCCGGA 1 cut(s) 93
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 98, 134, 226
BspMI ACCTGC 2 cut(s) 268, 594
BspPI GGATC 6 cut(s) 91, 104, 127, 140, 219, 232
BssMI GATC 8 cut(s) 96, 103, 108, 132, 224, 259, 392, 687
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 2 cut(s) 414, 588
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 6 cut(s) 29, 75, 240, 462, 522, 528
BstENI CCTNNNNNAGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 8 cut(s) 99, 106, 111, 135, 227, 262, 395, 690
BstMBI GATC 8 cut(s) 96, 103, 108, 132, 224, 259, 392, 687
BstV1I GCAGC 3 cut(s) 27, 486, 632
BstX2I RGATCY 4 cut(s) 96, 132, 224, 392
BstXI CCANNNNNNTGG 1 cut(s) 503
BstYI RGATCY 4 cut(s) 96, 132, 224, 392
BsuRI GGCC 3 cut(s) 203, 559, 714
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 111, 204
BveI ACCTGC 2 cut(s) 268, 594
Cac8I GCNNGC 1 cut(s) 557
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 555
Cfr13I GGNCC 2 cut(s) 162, 368
Csp6I GTAC 1 cut(s) 244
CviAII CATG 2 cut(s) 263, 341
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 6 cut(s) 29, 75, 240, 462, 522, 528
DpnI GATC 8 cut(s) 98, 105, 110, 134, 226, 261, 394, 689
DpnII GATC 8 cut(s) 96, 103, 108, 132, 224, 259, 392, 687
EaeI YGGCCR 1 cut(s) 712
Eam1104I CTCTTC 2 cut(s) 414, 588
EarI CTCTTC 2 cut(s) 414, 588
Eco47I GGWCC 2 cut(s) 162, 368
Eco57I CTGAAG 5 cut(s) 182, 292, 438, 569, 612
EcoNI CCTNNNNNAGG 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 368
FaeI CATG 2 cut(s) 266, 344
FaiI YATR 8 cut(s) 59, 216, 264, 286, 288, 342, 348, 639
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FatI CATG 2 cut(s) 262, 340
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 5 cut(s) 16, 72, 475, 621, 642
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 5 cut(s) 16, 72, 475, 621, 642
FspBI CTAG 4 cut(s) 68, 128, 336, 426
GlaI GCGC 1 cut(s) 554
GluI GCNGC 5 cut(s) 16, 72, 475, 621, 642
HaeIII GGCC 3 cut(s) 203, 559, 714
HapII CCGG 1 cut(s) 94
HhaI GCGC 1 cut(s) 555
Hin1II CATG 2 cut(s) 266, 344
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HinfI GANTC 2 cut(s) 269, 422
HpaII CCGG 1 cut(s) 94
HphI GGTGA 1 cut(s) 269
Hpy188I TCNGA 3 cut(s) 108, 537, 669
Hpy188III TCNNGA 5 cut(s) 94, 239, 341, 371, 426
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 15, 90, 277
HpyF3I CTNAG 6 cut(s) 29, 75, 240, 462, 522, 528
Hsp92II CATG 2 cut(s) 266, 344
HspAI GCGC 1 cut(s) 553
Kpn2I TCCGGA 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 8 cut(s) 96, 103, 108, 132, 224, 259, 392, 687
Lsp1109I GCAGC 3 cut(s) 27, 486, 632
LweI GCATC 2 cut(s) 99, 541
MaeI CTAG 4 cut(s) 68, 128, 336, 426
MaeIII GTNAC 2 cut(s) 481, 609
MalI GATC 8 cut(s) 98, 105, 110, 134, 226, 261, 394, 689
MboI GATC 8 cut(s) 96, 103, 108, 132, 224, 259, 392, 687
MboII GAAGA 6 cut(s) 188, 431, 560, 605, 682, 685
MflI RGATCY 4 cut(s) 96, 132, 224, 392
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 2 cut(s) 63, 716
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 2 cut(s) 278, 431
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 5 cut(s) 153, 316, 589, 600, 666
Mox20I TGGCCA 1 cut(s) 714
MroI TCCGGA 1 cut(s) 93
MscI TGGCCA 1 cut(s) 714
MseI TTAA 2 cut(s) 41, 702
Msp20I TGGCCA 1 cut(s) 714
MspI CCGG 1 cut(s) 94
NdeII GATC 8 cut(s) 96, 103, 108, 132, 224, 259, 392, 687
NlaIII CATG 2 cut(s) 266, 344
NlaIV GGNNCC 3 cut(s) 98, 134, 226
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 481, 609
PagI TCATGA 1 cut(s) 340
PaqCI CACCTGC 1 cut(s) 268
PflFI GACNNNGTC 1 cut(s) 463
PkrI GCNGC 5 cut(s) 17, 73, 476, 622, 643
PleI GAGTC 2 cut(s) 277, 430
PpsI GAGTC 2 cut(s) 277, 430
PpuMI RGGWCCY 1 cut(s) 368
Psp5II RGGWCCY 1 cut(s) 368
PspN4I GGNNCC 3 cut(s) 98, 134, 226
PspPI GGNCC 2 cut(s) 162, 368
PspPPI RGGWCCY 1 cut(s) 368
PsuI RGATCY 4 cut(s) 96, 132, 224, 392
PsyI GACNNNGTC 1 cut(s) 463
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 41, 702
SatI GCNGC 5 cut(s) 16, 72, 475, 621, 642
Sau3AI GATC 8 cut(s) 96, 103, 108, 132, 224, 259, 392, 687
Sau96I GGNCC 2 cut(s) 162, 368
SchI GAGTC 2 cut(s) 278, 431
SfaNI GCATC 2 cut(s) 99, 541
SinI GGWCC 2 cut(s) 162, 368
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 2 cut(s) 63, 716
SsiI CCGC 2 cut(s) 71, 642
SspI AATATT 1 cut(s) 664
SspMI CTAG 4 cut(s) 68, 128, 336, 426
TaaI ACNGT 1 cut(s) 208
TasI AATT 2 cut(s) 63, 716
TatI WGTACW 1 cut(s) 243
TauI GCSGC 2 cut(s) 74, 644
Tru1I TTAA 2 cut(s) 41, 702
Tru9I TTAA 2 cut(s) 41, 702
TscAI CASTG 2 cut(s) 118, 211
TseFI GTSAC 2 cut(s) 481, 609
TseI GCWGC 3 cut(s) 15, 474, 620
Tsp45I GTSAC 2 cut(s) 481, 609
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 2 cut(s) 118, 211
Tth111I GACNNNGTC 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 162, 368
XagI CCTNNNNNAGG 1 cut(s) 157
XbaI TCTAGA 1 cut(s) 425
XspI CTAG 4 cut(s) 68, 128, 336, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.