AT2G18280

Tubby-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010770
Physical Location & Seq
Forward (+)
7945998 .. 7948468
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18280.1

Sequence Viewer

Length: 1185 bp
ATGTCTTTGAAAAGCATCCTTCGTGATCTGAAGGAAGTGAGGGATGGACTTGGAGGCATCTCCAAGAGAAGCTGGTCAAAGTCGTCTCACATTGCTCCTGATCAAACAACTCCACCACTGGATAACATACCACAGAGCCCATGGGCTTCTTTGCCGCCTGAGTTGCTTCATGACATTATCTGGAGGGTTGAAGAGAGTGAGACAGCTTGGCCCGCTCGAGCTGCCGTTGTCTCTTGTGCTTCAGTATGTAAATCATGGAGAGGAATCACTATGGAGATTGTGAGGATCCCTGAGCAGTGTGGGAAGCTCACTTTTCCAATCTCATTGAAACAGCCGGGGCCTCGAGACTCTCCAATTCAATGTTTTATTAAGAGGAACAGAGCAACAGCTACATACATTCTCTATTATGGTTTGATGCCTTCGGAGACTGAGAACGACAAACTGTTGTTAGCAGCAAGAAGGATTAGAAGAGCGACATGCACAGACTTTATAATCTCCCTATCTGCAAAGAACTTCTCACGGAGCAGCAGTACTTATGTTGGCAAATTAAGGTCTGGTTTTCTGGGAACCAAGTTCACAATATATGACAACCAAACAGCATCATCCACAGCACAAGCCCAACCTAACCGAAGACTCCACCCGAAACAAGCGGCTCCTAAACTACCTACGAATAGCTCTACCGTAGGAAACATAACCTACGAGCTCAATGTTCTTCGCACAAGGGGACCTAGAAGAATGCACTGCGCTATGGATTCTATACCCCTCTCTTCTGTTATTGCTGAACCGTCAGTAGTTCAAGGCATAGAAGAGGAAGTCTCTTCCTCTCCTTCACCAAAAGGAGAAACCATCACAACAGACAAAGAGATTCCTGATAATTCTCCAAGCTTAAGGGACCAACCGCTAGTTCTCAAAAACAAATCCCCAAGATGGCATGAGCAGTTGCAGTGCTGGTGCCTCAACTTCAAGGGAAGAGTGACTGTGGCTTCAGTTAAGAATTTCCAGCTTGTTGCAGAGATTGACGCTTCTTTGGATGCGCCGCCTGAAGAACATGAGAGGGTGATCTTACAGTTTGGCAAAATCGGTAAGGATATTTTCACCATGGATTATCGCTACCCTCTATCTGCTTTTCAAGCCTTTGCTATATGCATTAGCAGCTTTGACACCAAACCGGCATGTGAAGGGTAA

Protein Analysis

394

Amino Acids

43.88

Weight (kDa)

9.1

Isoelectric Point (pI)

63.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 109 - 388 3.2e-101 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010770)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18280 AT2G18280
fragaria_vesca FvH4_1g13070
malus_domestica MD02G1145300.v1.1 MD14G1114200.v1.1 MD15G1259500.v1.1
prunus_persica Prupe.7G156400_v2.0.a1
pyrus_communis pycom02g11500 pycom15g22700
rosa_chinensis RchiOBHm_Chr2g0101241
rosa_laevigata RLG00000017064
rosa_multiflora Rmu_sc0006314.1_g000016
rosa_roxburghii Rroxscaffold_2G00141470
rosa_rugosa Rorug02G0099900 Rorug02G0100000
rosa_samantha Rh2AG145400 Rh2BG150800 Rh2CG151200 Rh2DG150900
rosa_wichuraiana Rw2G011340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 491
AccB1I GGYRCC 1 cut(s) 951
AccBSI CCGCTC 1 cut(s) 215
AciI CCGC 5 cut(s) 155, 213, 650, 899, 1037
AclWI GGATC 2 cut(s) 280, 293
AcsI RAATTY 1 cut(s) 994
AcuI CTGAAG 4 cut(s) 50, 225, 969, 1062
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 1 cut(s) 927
AflII CTTAAG 1 cut(s) 886
AgsI TTSAA 7 cut(s) 10, 191, 328, 359, 797, 964, 1130
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 6 cut(s) 90, 194, 235, 339, 419, 820
AlwI GGATC 2 cut(s) 280, 293
Ama87I CYCGRG 2 cut(s) 216, 342
AoxI GGCC 2 cut(s) 209, 338
ApeKI GCWGC 4 cut(s) 221, 452, 525, 1152
ApoI RAATTY 1 cut(s) 994
AspLEI GCGC 2 cut(s) 746, 1036
AspS9I GGNCC 4 cut(s) 210, 338, 725, 892
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 3 cut(s) 822, 1069, 1087
AvaI CYCGRG 2 cut(s) 216, 342
AvaII GGWCC 2 cut(s) 725, 892
BamHI GGATCC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 951
BanII GRGCYC 2 cut(s) 140, 705
BbsI GAAGAC 1 cut(s) 637
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 4 cut(s) 208, 464, 537, 1164
BccI CCATC 3 cut(s) 38, 854, 921
BceAI ACGGC 1 cut(s) 209
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 6 cut(s) 90, 194, 235, 339, 419, 820
BfaI CTAG 2 cut(s) 729, 902
BfrI CTTAAG 1 cut(s) 886
BisI GCNGC 7 cut(s) 155, 222, 453, 526, 651, 1037, 1153
BlsI GCNGC 7 cut(s) 156, 223, 454, 527, 652, 1038, 1154
BmcAI AGTACT 1 cut(s) 532
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 2 cut(s) 725, 892
BmeT110I CYCGRG 2 cut(s) 216, 342
BmgT120I GGNCC 4 cut(s) 210, 338, 725, 892
BmiI GGNNCC 7 cut(s) 287, 339, 568, 654, 726, 893, 953
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 5 cut(s) 24, 66, 405, 608, 1021
BpiI GAAGAC 1 cut(s) 637
BplI GAGNNNNNCTC 2 cut(s) 800, 832
BpmI CTGGAG 1 cut(s) 202
Bpu10I CCTNAGC 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 140, 335, 1098
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 1 cut(s) 927
Bse118I RCCGGY 1 cut(s) 1168
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 140, 335, 1098
BseGI GGATG 4 cut(s) 15, 49, 602, 1036
BseLI CCNNNNNNNGG 1 cut(s) 927
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 3 cut(s) 150, 282, 420
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 4 cut(s) 208, 464, 537, 1164
BshFI GGCC 2 cut(s) 211, 340
BshNI GGYRCC 1 cut(s) 951
BsiHKAI GWGCWC 1 cut(s) 705
BsiHKCI CYCGRG 2 cut(s) 216, 342
BsiSI CCGG 2 cut(s) 335, 1169
BslFI GGGAC 2 cut(s) 738, 905
BslI CCNNNNNNNGG 1 cut(s) 927
BsmAI GTCTC 6 cut(s) 90, 194, 235, 339, 419, 820
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 2 cut(s) 738, 905
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 2 cut(s) 211, 340
BsoBI CYCGRG 2 cut(s) 216, 342
Bsp1286I GDGCHC 2 cut(s) 140, 705
Bsp143I GATC 4 cut(s) 25, 100, 285, 1059
Bsp19I CCATGG 2 cut(s) 140, 1098
BspACI CCGC 5 cut(s) 155, 213, 650, 899, 1037
BspANI GGCC 2 cut(s) 211, 340
BspCNI CTCAG 3 cut(s) 151, 283, 421
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 7 cut(s) 287, 339, 568, 654, 726, 893, 953
BspPI GGATC 2 cut(s) 280, 293
BspQI GCTCTTC 1 cut(s) 463
BspT107I GGYRCC 1 cut(s) 951
BspTI CTTAAG 1 cut(s) 886
BsrBI CCGCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 1168
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 1168
BssECI CCNNGG 3 cut(s) 140, 335, 1098
BssMI GATC 4 cut(s) 25, 100, 285, 1059
BssT1I CCWWGG 2 cut(s) 140, 1098
Bst4CI ACNGT 5 cut(s) 444, 682, 786, 979, 1068
Bst6I CTCTTC 6 cut(s) 186, 463, 772, 801, 823, 964
BstAFI CTTAAG 1 cut(s) 886
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 159, 291, 429
BstDSI CCRYGG 2 cut(s) 140, 1098
BstF5I GGATG 4 cut(s) 15, 49, 602, 1036
BstHHI GCGC 2 cut(s) 746, 1036
BstKTI GATC 4 cut(s) 28, 103, 288, 1062
BstMAI GTCTC 6 cut(s) 90, 194, 235, 339, 419, 820
BstMBI GATC 4 cut(s) 25, 100, 285, 1059
BstMWI GCNNNNNNNGC 5 cut(s) 163, 212, 221, 1130, 1152
BstNSI RCATGY 2 cut(s) 480, 1176
BstSCI CCNGG 1 cut(s) 334
BstV1I GCAGC 4 cut(s) 208, 464, 537, 1164
BstV2I GAAGAC 1 cut(s) 637
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 2 cut(s) 211, 340
BtgI CCRYGG 2 cut(s) 140, 1098
BtsCI GGATG 4 cut(s) 15, 49, 602, 1036
BtsI GCAGTG 3 cut(s) 302, 739, 950
BtsIMutI CAGTG 4 cut(s) 116, 302, 739, 950
Cac8I GCNNGC 1 cut(s) 213
CciI TCATGA 1 cut(s) 169
CfoI GCGC 2 cut(s) 746, 1036
Cfr10I RCCGGY 1 cut(s) 1168
Cfr13I GGNCC 4 cut(s) 210, 338, 725, 892
CseI GACGC 1 cut(s) 1028
Csp6I GTAC 1 cut(s) 531
CviAII CATG 8 cut(s) 141, 170, 255, 477, 932, 1049, 1099, 1173
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 3 cut(s) 159, 291, 429
DpnI GATC 4 cut(s) 27, 102, 287, 1061
DpnII GATC 4 cut(s) 25, 100, 285, 1059
Eam1104I CTCTTC 6 cut(s) 186, 463, 772, 801, 823, 964
EarI CTCTTC 6 cut(s) 186, 463, 772, 801, 823, 964
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 2 cut(s) 140, 1098
Eco24I GRGCYC 2 cut(s) 140, 705
Eco47I GGWCC 2 cut(s) 725, 892
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 4 cut(s) 50, 225, 969, 1062
Eco88I CYCGRG 2 cut(s) 216, 342
EcoICRI GAGCTC 1 cut(s) 703
EcoO109I RGGNCCY 2 cut(s) 338, 725
EcoT14I CCWWGG 2 cut(s) 140, 1098
EcoT22I ATGCAT 1 cut(s) 1148
EcoT38I GRGCYC 2 cut(s) 140, 705
ErhI CCWWGG 2 cut(s) 140, 1098
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 8 cut(s) 144, 173, 258, 480, 935, 1052, 1102, 1176
FaqI GGGAC 2 cut(s) 738, 905
FatI CATG 8 cut(s) 140, 169, 254, 476, 931, 1048, 1098, 1172
FauI CCCGC 1 cut(s) 220
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 7 cut(s) 155, 222, 453, 526, 651, 1037, 1153
FokI GGATG 4 cut(s) 2, 56, 589, 1043
FriOI GRGCYC 2 cut(s) 140, 705
Fsp4HI GCNGC 7 cut(s) 155, 222, 453, 526, 651, 1037, 1153
FspBI CTAG 2 cut(s) 729, 902
GlaI GCGC 2 cut(s) 745, 1035
GluI GCNGC 7 cut(s) 155, 222, 453, 526, 651, 1037, 1153
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 2 cut(s) 211, 340
HapII CCGG 2 cut(s) 335, 1169
HgaI GACGC 1 cut(s) 1028
HhaI GCGC 2 cut(s) 746, 1036
Hin1II CATG 8 cut(s) 144, 173, 258, 480, 935, 1052, 1102, 1176
Hin6I GCGC 2 cut(s) 744, 1034
HinP1I GCGC 2 cut(s) 744, 1034
HindIII AAGCTT 1 cut(s) 883
HinfI GANTC 5 cut(s) 264, 347, 633, 752, 865
HpaII CCGG 2 cut(s) 335, 1169
HphI GGTGA 3 cut(s) 822, 1069, 1087
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 2 cut(s) 30, 424
Hpy188III TCNNGA 6 cut(s) 23, 98, 170, 181, 344, 869
Hpy8I GTNNAC 1 cut(s) 576
HpyAV CCTTC 6 cut(s) 25, 29, 429, 453, 837, 1172
HpyCH4III ACNGT 5 cut(s) 444, 682, 786, 979, 1068
HpyCH4V TGCA 6 cut(s) 480, 506, 739, 943, 1010, 1146
HpyF10VI GCNNNNNNNGC 5 cut(s) 163, 212, 221, 1130, 1152
HpyF3I CTNAG 3 cut(s) 159, 291, 429
Hsp92II CATG 8 cut(s) 144, 173, 258, 480, 935, 1052, 1102, 1176
HspAI GCGC 2 cut(s) 744, 1034
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 4 cut(s) 25, 100, 285, 1059
LguI GCTCTTC 1 cut(s) 463
LmnI GCTCC 3 cut(s) 100, 522, 658
Lsp1109I GCAGC 4 cut(s) 208, 464, 537, 1164
LweI GCATC 5 cut(s) 24, 66, 405, 608, 1021
MaeI CTAG 2 cut(s) 729, 902
MaeIII GTNAC 1 cut(s) 973
MalI GATC 4 cut(s) 27, 102, 287, 1061
MbiI CCGCTC 1 cut(s) 215
MboI GATC 4 cut(s) 25, 100, 285, 1059
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 2 cut(s) 140, 705
MluCI AATT 4 cut(s) 354, 545, 874, 994
MlyI GAGTC 2 cut(s) 341, 627
Mph1103I ATGCAT 1 cut(s) 1148
MseI TTAA 4 cut(s) 369, 548, 887, 990
MspCI CTTAAG 1 cut(s) 886
MspI CCGG 2 cut(s) 335, 1169
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 741
MwoI GCNNNNNNNGC 5 cut(s) 163, 212, 221, 1130, 1152
NciI CCSGG 1 cut(s) 336
NcoI CCATGG 2 cut(s) 140, 1098
NdeII GATC 4 cut(s) 25, 100, 285, 1059
NlaIII CATG 8 cut(s) 144, 173, 258, 480, 935, 1052, 1102, 1176
NlaIV GGNNCC 7 cut(s) 287, 339, 568, 654, 726, 893, 953
NmuCI GTSAC 1 cut(s) 973
NsiI ATGCAT 1 cut(s) 1148
NspI RCATGY 2 cut(s) 480, 1176
PaeR7I CTCGAG 2 cut(s) 216, 342
PagI TCATGA 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 463
PctI GAATGC 1 cut(s) 741
PfeI GAWTC 3 cut(s) 264, 752, 865
PkrI GCNGC 7 cut(s) 156, 223, 454, 527, 652, 1038, 1154
PleI GAGTC 2 cut(s) 341, 627
PpsI GAGTC 2 cut(s) 341, 627
PpuMI RGGWCCY 1 cut(s) 725
PsiI TTATAA 1 cut(s) 491
Psp124BI GAGCTC 1 cut(s) 705
Psp5II RGGWCCY 1 cut(s) 725
PspN4I GGNNCC 7 cut(s) 287, 339, 568, 654, 726, 893, 953
PspPI GGNCC 4 cut(s) 210, 338, 725, 892
PspPPI RGGWCCY 1 cut(s) 725
PspXI VCTCGAGB 1 cut(s) 216
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
SacI GAGCTC 1 cut(s) 705
SapI GCTCTTC 1 cut(s) 463
SaqAI TTAA 4 cut(s) 369, 548, 887, 990
SatI GCNGC 7 cut(s) 155, 222, 453, 526, 651, 1037, 1153
Sau3AI GATC 4 cut(s) 25, 100, 285, 1059
Sau96I GGNCC 4 cut(s) 210, 338, 725, 892
ScaI AGTACT 1 cut(s) 532
SchI GAGTC 2 cut(s) 341, 627
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 2 cut(s) 140, 705
SfaNI GCATC 5 cut(s) 24, 66, 405, 608, 1021
Sfr274I CTCGAG 2 cut(s) 216, 342
SinI GGWCC 2 cut(s) 725, 892
SlaI CTCGAG 2 cut(s) 216, 342
SmlI CTYRAG 3 cut(s) 216, 342, 886
SmoI CTYRAG 3 cut(s) 216, 342, 886
Sse9I AATT 4 cut(s) 354, 545, 874, 994
SsiI CCGC 5 cut(s) 155, 213, 650, 899, 1037
SspMI CTAG 2 cut(s) 729, 902
SstI GAGCTC 1 cut(s) 705
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 2 cut(s) 140, 1098
TaaI ACNGT 5 cut(s) 444, 682, 786, 979, 1068
TaqI TCGA 2 cut(s) 217, 343
TasI AATT 4 cut(s) 354, 545, 874, 994
TatI WGTACW 1 cut(s) 530
TauI GCSGC 3 cut(s) 157, 653, 1039
TfiI GAWTC 3 cut(s) 264, 752, 865
Tru1I TTAA 4 cut(s) 369, 548, 887, 990
Tru9I TTAA 4 cut(s) 369, 548, 887, 990
TscAI CASTG 4 cut(s) 123, 302, 746, 950
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 4 cut(s) 221, 452, 525, 1152
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 4 cut(s) 123, 302, 746, 950
Vha464I CTTAAG 1 cut(s) 886
VpaK11BI GGWCC 2 cut(s) 725, 892
XapI RAATTY 1 cut(s) 994
XceI RCATGY 2 cut(s) 480, 1176
XcmI CCANNNNNNNNNTGG 1 cut(s) 138
XhoI CTCGAG 2 cut(s) 216, 342
XspI CTAG 2 cut(s) 729, 902
ZrmI AGTACT 1 cut(s) 532
Zsp2I ATGCAT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.