Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010770

Physical Location & Seq

Genomic Coordinates Forward (+)

22050085 .. 22052827

Gene Structure 2743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1259500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGAAAGATGGGATTGGGAGCATGTCAAGGCGAGTTGGTGAACGGAAGCATTGGCGTAGTCGGACTTTGTCGCATATTGCTCCTGATATGGCTCCAACCCCGCCAACTGATGTGATTCAGCAGGGTCAGTGGGCTAACTTGCCTACGGAATTGCTTCTGGACATAATTCAGAGGGTAGAAGAAAGTGAAACATCGTGGCCTGCTCGAGCTGTCGTTGTTTTTTGTGGTTCGGTTTGTAAGTCATGGAGGGGCATTATGAGGGATATAGTCAAAACTCCCGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTGAAGCAGCCGGGGCCTCGCCAATCTCCAATACAGTGCTTCATTCGAAGGGGTAGAGAAACTTCCACATATTATCTTTACTACGGTCTGGTACCATCTGAGGGTGAGAAAGATAAATTATTGTTAGCAGCCAAAAGGATCAGAAGGGCAACAAGCACCGAGTTCGTTATATCTTTGGTTTCAGATGATTTTTCTCGAGCCAGCACTACATATGTTGGTAAATTGAGGTCCAACTTTTTGGGTACCAAGTTCACCGTACATGACAGCCAGCCTCCATGTGATGCAGTACCCCAACCAAATAATCGATCATCTCGAAGGTTCCATTCTAAGCAGGTGTCTCCAAGAGTACCAGCGTGTAACTACAACATTGGCACCATCTCTTACGAGCTCAATATTCTTCGCACAAGAGGTCCAAGGAGAATGCATTGTGCTATGCACTCCATTCCTGTCTCTTCCATTCAGGATGGGGGCACCGCCCCAACACCAACATCGTTCCCACAAGCCTATGACGAGCAATTTGCTCTCTCACCAAGTTCAAAAGAAAAGGATCTGATCAGAGAGTTCAGCTCTACAACCCTCTCGGAGCCAAATGTCTCAGCCCCAGGTGCAGAGCCACTGGTTTTGAAAAACAAGTCTCCTCGGTGGCATGAGCAGCTACAATGCTGGTGCCTTAACTTTAGAGGGCGTGTTACAGTGGCTTCCGTTAAAAATTTCCAGCTTGTGGCAGCTGTTGATCCATCCCACAACGTTTCGGCTGAAGAGCAAGAGAGGGTAATCCTACAGTTTGGGAAGATTGGAAAAGACATCTTCACCTTGGATTATCGCTACCCGCTGTCCTGTTTCCAAGCGTTTGCGATCTGCTTAAGCAGCTTCGACACTAAGCCAGCTTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

403

Amino Acids

45.18

Weight (kDa)

9.31

Isoelectric Point (pI)

64.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	105 - 397	1.1e-102	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18280 AT2G18280
fragaria_vesca	FvH4_1g13070
malus_domestica	MD02G1145300.v1.1 MD14G1114200.v1.1 MD15G1259500.v1.1
prunus_persica	Prupe.7G156400_v2.0.a1
pyrus_communis	pycom02g11500 pycom15g22700
rosa_chinensis	RchiOBHm_Chr2g0101241
rosa_laevigata	RLG00000017064
rosa_multiflora	Rmu_sc0006314.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141470
rosa_rugosa	Rorug02G0099900 Rorug02G0100000
rosa_samantha	Rh2AG145400 Rh2BG150800 Rh2CG151200 Rh2DG150900
rosa_wichuraiana	Rw2G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	634
Acc36I	ACCTGC	1 cut(s)	634
Acc65I	GGTACC	2 cut(s)	403, 554
AccB1I	GGYRCC	5 cut(s)	403, 554, 683, 782, 978
AccB7I	CCANNNNNTGG	1 cut(s)	1033
AciI	CCGC	3 cut(s)	101, 786, 1142
AclI	AACGTT	1 cut(s)	1059
AclWI	GGATC	3 cut(s)	458, 867, 1040
AcsI	RAATTY	1 cut(s)	1021
AcuI	CTGAAG	1 cut(s)	1089
AfaI	GTAC	5 cut(s)	405, 556, 570, 600, 660
AfiI	CCNNNNNNNGG	2 cut(s)	413, 1033
AflII	CTTAAG	1 cut(s)	1174
AgsI	TTSAA	3 cut(s)	316, 849, 937
AjnI	CCWGG	1 cut(s)	913
AluBI	AGCT	8 cut(s)	209, 700, 879, 967, 1030, 1040, 1182, 1199
AluI	AGCT	8 cut(s)	209, 700, 879, 967, 1030, 1040, 1182, 1199
Alw21I	GWGCWC	1 cut(s)	702
Alw26I	GTCTC	4 cut(s)	654, 766, 910, 951
AlwI	GGATC	3 cut(s)	458, 867, 1040
Ama87I	CYCGRG	3 cut(s)	204, 278, 507
AoxI	GGCC	2 cut(s)	197, 326
ApeKI	GCWGC	5 cut(s)	319, 440, 964, 1037, 1179
ApoI	RAATTY	1 cut(s)	1021
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
Asp700I	GAANNNNTTC	1 cut(s)	153
Asp718I	GGTACC	2 cut(s)	403, 554
AspS9I	GGNCC	3 cut(s)	326, 540, 722
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	5 cut(s)	50, 428, 556, 831, 1114
AsuII	TTCGAA	1 cut(s)	358
AvaI	CYCGRG	3 cut(s)	204, 278, 507
AvaII	GGWCC	2 cut(s)	540, 722
BaeGI	GKGCMC	1 cut(s)	785
BanI	GGYRCC	5 cut(s)	403, 554, 683, 782, 978
BanII	GRGCYC	1 cut(s)	702
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
Bbv12I	GWGCWC	1 cut(s)	702
BbvI	GCAGC	5 cut(s)	331, 452, 976, 1049, 1191
BccI	CCATC	5 cut(s)	2, 415, 695, 770, 1057
BcgI	CGANNNNNNTGC	4 cut(s)	457, 491, 812, 846
BciT130I	CCWGG	1 cut(s)	915
BclI	TGATCA	1 cut(s)	864
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	4 cut(s)	654, 766, 910, 951
BfmI	CTRYAG	1 cut(s)	1091
BfrI	CTTAAG	1 cut(s)	1174
BfuAI	ACCTGC	1 cut(s)	634
BisI	GCNGC	5 cut(s)	320, 441, 965, 1038, 1180
BlsI	GCNGC	5 cut(s)	321, 442, 966, 1039, 1181
Bme1390I	CCNGG	2 cut(s)	324, 915
Bme18I	GGWCC	2 cut(s)	540, 722
BmeT110I	CYCGRG	3 cut(s)	204, 278, 507
BmgT120I	GGNCC	3 cut(s)	326, 540, 722
BmiI	GGNNCC	9 cut(s)	93, 327, 405, 556, 632, 685, 784, 897, 980
BmrFI	CCNGG	2 cut(s)	324, 915
BmsI	GCATC	1 cut(s)	583
BplI	GAGNNNNNCTC	2 cut(s)	863, 895
Bpu14I	TTCGAA	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	324
Bsa29I	ATCGAT	1 cut(s)	616
BsaJI	CCNNGG	5 cut(s)	323, 725, 913, 950, 1125
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 1033
Bse1I	ACTGG	1 cut(s)	933
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	915
BseCI	ATCGAT	1 cut(s)	616
BseDI	CCNNGG	5 cut(s)	323, 725, 913, 950, 1125
BseGI	GGATG	2 cut(s)	781, 1049
BseLI	CCNNNNNNNGG	2 cut(s)	413, 1033
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	402, 921
BseNI	ACTGG	1 cut(s)	933
BseRI	GAGGAG	1 cut(s)	939
BseSI	GKGCMC	1 cut(s)	785
BseXI	GCAGC	5 cut(s)	331, 452, 976, 1049, 1191
BsgI	GTGCAG	1 cut(s)	939
BshFI	GGCC	2 cut(s)	199, 328
BshNI	GGYRCC	5 cut(s)	403, 554, 683, 782, 978
BshVI	ATCGAT	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	702
BsiHKCI	CYCGRG	3 cut(s)	204, 278, 507
BsiSI	CCGG	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	413, 1033
BsmAI	GTCTC	4 cut(s)	654, 766, 910, 951
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	2 cut(s)	199, 328
BsoBI	CYCGRG	3 cut(s)	204, 278, 507
Bsp119I	TTCGAA	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	702, 785
Bsp143I	GATC	6 cut(s)	450, 617, 859, 864, 1045, 1167
BspACI	CCGC	3 cut(s)	101, 786, 1142
BspANI	GGCC	2 cut(s)	199, 328
BspCNI	CTCAG	2 cut(s)	403, 920
BspDI	ATCGAT	1 cut(s)	616
BspLI	GGNNCC	9 cut(s)	93, 327, 405, 556, 632, 685, 784, 897, 980
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	3 cut(s)	458, 867, 1040
BspQI	GCTCTTC	1 cut(s)	1065
BspT104I	TTCGAA	1 cut(s)	358
BspT107I	GGYRCC	5 cut(s)	403, 554, 683, 782, 978
BspTI	CTTAAG	1 cut(s)	1174
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	933
BssECI	CCNNGG	5 cut(s)	323, 725, 913, 950, 1125
BssMI	GATC	6 cut(s)	450, 617, 859, 864, 1045, 1167
BssT1I	CCWWGG	2 cut(s)	725, 1125
Bst2UI	CCWGG	1 cut(s)	915
Bst4CI	ACNGT	5 cut(s)	348, 398, 568, 1006, 1095
Bst6I	CTCTTC	2 cut(s)	769, 1065
BstAFI	CTTAAG	1 cut(s)	1174
BstBI	TTCGAA	1 cut(s)	358
BstC8I	GCNNGC	4 cut(s)	201, 514, 581, 1197
BstDEI	CTNAG	4 cut(s)	411, 639, 907, 1191
BstF5I	GGATG	2 cut(s)	781, 1049
BstKTI	GATC	6 cut(s)	453, 620, 862, 867, 1048, 1170
BstMAI	GTCTC	4 cut(s)	654, 766, 910, 951
BstMBI	GATC	6 cut(s)	450, 617, 859, 864, 1045, 1167
BstMWI	GCNNNNNNNGC	4 cut(s)	325, 917, 964, 1179
BstNI	CCWGG	1 cut(s)	915
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	322, 913
BstSFI	CTRYAG	1 cut(s)	1091
BstSLI	GKGCMC	1 cut(s)	785
BstV1I	GCAGC	5 cut(s)	331, 452, 976, 1049, 1191
BstX2I	RGATCY	1 cut(s)	859
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	859
Bsu15I	ATCGAT	1 cut(s)	616
BsuRI	GGCC	2 cut(s)	199, 328
BsuTUI	ATCGAT	1 cut(s)	616
BtsCI	GGATG	2 cut(s)	781, 1049
BtsIMutI	CAGTG	4 cut(s)	134, 353, 926, 1011
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	4 cut(s)	201, 514, 581, 1197
Cfr13I	GGNCC	3 cut(s)	326, 540, 722
ClaI	ATCGAT	1 cut(s)	616
Csp6I	GTAC	5 cut(s)	404, 555, 569, 599, 659
CspCI	CAANNNNNGTGG	2 cut(s)	915, 950
CviAII	CATG	5 cut(s)	22, 243, 572, 588, 959
CviQI	GTAC	5 cut(s)	404, 555, 569, 599, 659
DdeI	CTNAG	4 cut(s)	411, 639, 907, 1191
DpnI	GATC	6 cut(s)	452, 619, 861, 866, 1047, 1169
DpnII	GATC	6 cut(s)	450, 617, 859, 864, 1045, 1167
Eam1104I	CTCTTC	2 cut(s)	769, 1065
EarI	CTCTTC	2 cut(s)	769, 1065
Ecl136II	GAGCTC	1 cut(s)	700
Eco130I	CCWWGG	2 cut(s)	725, 1125
Eco24I	GRGCYC	1 cut(s)	702
Eco47I	GGWCC	2 cut(s)	540, 722
Eco53kI	GAGCTC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	1089
Eco88I	CYCGRG	3 cut(s)	204, 278, 507
EcoICRI	GAGCTC	1 cut(s)	700
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	913
EcoT14I	CCWWGG	2 cut(s)	725, 1125
EcoT22I	ATGCAT	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	702
ErhI	CCWWGG	2 cut(s)	725, 1125
FaeI	CATG	5 cut(s)	25, 246, 575, 591, 962
FatI	CATG	5 cut(s)	21, 242, 571, 587, 958
FauI	CCCGC	2 cut(s)	108, 1149
FauNDI	CATATG	1 cut(s)	523
FbaI	TGATCA	1 cut(s)	864
Fnu4HI	GCNGC	5 cut(s)	320, 441, 965, 1038, 1180
FokI	GGATG	2 cut(s)	788, 1036
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	5 cut(s)	320, 441, 965, 1038, 1180
GluI	GCNGC	5 cut(s)	320, 441, 965, 1038, 1180
HaeIII	GGCC	2 cut(s)	199, 328
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	5 cut(s)	25, 246, 575, 591, 962
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	5 cut(s)	50, 428, 556, 831, 1114
Hpy166II	GTNNAC	2 cut(s)	41, 564
Hpy188I	TCNGA	8 cut(s)	63, 171, 412, 455, 496, 864, 869, 895
Hpy188III	TCNNGA	6 cut(s)	83, 158, 278, 507, 624, 773
Hpy8I	GTNNAC	2 cut(s)	41, 564
HpyAV	CCTTC	4 cut(s)	285, 354, 450, 621
HpyCH4III	ACNGT	5 cut(s)	348, 398, 568, 1006, 1095
HpyCH4IV	ACGT	1 cut(s)	1059
HpyCH4V	TGCA	4 cut(s)	596, 736, 748, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	325, 917, 964, 1179
HpyF3I	CTNAG	4 cut(s)	411, 639, 907, 1191
HpySE526I	ACGT	1 cut(s)	1059
Hsp92II	CATG	5 cut(s)	25, 246, 575, 591, 962
KpnI	GGTACC	2 cut(s)	407, 558
Ksp22I	TGATCA	1 cut(s)	864
Kzo9I	GATC	6 cut(s)	450, 617, 859, 864, 1045, 1167
LguI	GCTCTTC	1 cut(s)	1065
LmnI	GCTCC	4 cut(s)	18, 85, 97, 895
Lsp1109I	GCAGC	5 cut(s)	331, 452, 976, 1049, 1191
LweI	GCATC	1 cut(s)	583
MaeII	ACGT	1 cut(s)	1059
MaeIII	GTNAC	2 cut(s)	668, 1000
MalI	GATC	6 cut(s)	452, 619, 861, 866, 1047, 1169
MboI	GATC	6 cut(s)	450, 617, 859, 864, 1045, 1167
MboII	GAAGA	6 cut(s)	191, 701, 756, 1082, 1111, 1114
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	2 cut(s)	702, 785
MluCI	AATT	6 cut(s)	149, 165, 428, 533, 827, 1021
MmeI	TCCRAC	3 cut(s)	41, 119, 567
Mph1103I	ATGCAT	1 cut(s)	738
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	3 cut(s)	984, 1017, 1175
MspA1I	CMGCKG	2 cut(s)	1040, 1144
MspCI	CTTAAG	1 cut(s)	1174
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	324, 915
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	915
MwoI	GCNNNNNNNGC	4 cut(s)	325, 917, 964, 1179
NciI	CCSGG	1 cut(s)	324
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	6 cut(s)	450, 617, 859, 864, 1045, 1167
NlaIII	CATG	5 cut(s)	25, 246, 575, 591, 962
NlaIV	GGNNCC	9 cut(s)	93, 327, 405, 556, 632, 685, 784, 897, 980
NsiI	ATGCAT	1 cut(s)	738
NspI	RCATGY	1 cut(s)	25
NspV	TTCGAA	1 cut(s)	358
PaeR7I	CTCGAG	2 cut(s)	204, 507
PaqCI	CACCTGC	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	1065
PcsI	WCGNNNNNNNCGW	1 cut(s)	622
PctI	GAATGC	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	115
PflFI	GACNNNGTC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	1033
PkrI	GCNGC	5 cut(s)	321, 442, 966, 1039, 1181
Psp124BI	GAGCTC	1 cut(s)	702
Psp1406I	AACGTT	1 cut(s)	1059
Psp6I	CCWGG	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	913
PspN4I	GGNNCC	9 cut(s)	93, 327, 405, 556, 632, 685, 784, 897, 980
PspPI	GGNCC	3 cut(s)	326, 540, 722
PspXI	VCTCGAGB	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	859
PsyI	GACNNNGTC	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	1040
RsaI	GTAC	5 cut(s)	405, 556, 570, 600, 660
RsaNI	GTAC	5 cut(s)	404, 555, 569, 599, 659
SacI	GAGCTC	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	1065
SaqAI	TTAA	3 cut(s)	984, 1017, 1175
SatI	GCNGC	5 cut(s)	320, 441, 965, 1038, 1180
Sau3AI	GATC	6 cut(s)	450, 617, 859, 864, 1045, 1167
Sau96I	GGNCC	3 cut(s)	326, 540, 722
ScrFI	CCNGG	2 cut(s)	324, 915
SduI	GDGCHC	2 cut(s)	702, 785
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	1091
Sfr274I	CTCGAG	2 cut(s)	204, 507
SfuI	TTCGAA	1 cut(s)	358
SinI	GGWCC	2 cut(s)	540, 722
SlaI	CTCGAG	2 cut(s)	204, 507
SmlI	CTYRAG	3 cut(s)	204, 507, 1174
SmoI	CTYRAG	3 cut(s)	204, 507, 1174
Sse9I	AATT	6 cut(s)	149, 165, 428, 533, 827, 1021
SsiI	CCGC	3 cut(s)	101, 786, 1142
SspI	AATATT	1 cut(s)	706
SstI	GAGCTC	1 cut(s)	702
StyD4I	CCNGG	2 cut(s)	322, 913
StyI	CCWWGG	2 cut(s)	725, 1125
TaaI	ACNGT	5 cut(s)	348, 398, 568, 1006, 1095
TaiI	ACGT	1 cut(s)	1062
TaqI	TCGA	6 cut(s)	205, 358, 508, 616, 625, 1185
TasI	AATT	6 cut(s)	149, 165, 428, 533, 827, 1021
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	3 cut(s)	984, 1017, 1175
Tru9I	TTAA	3 cut(s)	984, 1017, 1175
TscAI	CASTG	4 cut(s)	134, 353, 933, 1011
TseI	GCWGC	5 cut(s)	319, 440, 964, 1037, 1179
TspDTI	ATGAA	2 cut(s)	17, 343
TspGWI	ACGGA	3 cut(s)	58, 161, 1003
TspRI	CASTG	4 cut(s)	134, 353, 933, 1011
Tth111I	GACNNNGTC	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	1033
Vha464I	CTTAAG	1 cut(s)	1174
VpaK11BI	GGWCC	2 cut(s)	540, 722
XapI	RAATTY	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	25
XhoI	CTCGAG	2 cut(s)	204, 507
XmnI	GAANNNNTTC	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.