Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010770

Physical Location & Seq

Genomic Coordinates Forward (+)

18495494 .. 18496175

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1114200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCGTTCAAAGGCATTGTTCGTGAGCTGCGGGAGATGAAAGATAGGATTGGGAGCATGTCAAGGCGAGTTGGTGAACGGAAGCATTGGCGTAGTCGGACTTTGTCGCATATTGCTCCTGATATGGCTCCAACCCCGCCAACTGATGTGATTCAGCAGGGTCAATGGGCTAACTTGCCTCTGGAATTGCTTCTGGACATAATTCAAAGGGTAGAAGAAAGTGAAACATCGTGGCCTGCTCGAGCTGTCGTTGTTTTTTGTGGTTCGGTTTGTAAGTCATGGAGGGGCATTATGAGGGATATAGTCAAAACTCCCGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTGAAGCAGCCGGGGCCTCGCCAAATCTCCAATACAGTGCTTCATTCGAAGGGGATCAGAAGGGCAACAAGCACCGAGTTCGTTATATCTTTGGTTTCAGATGATTTTTCTCGAGCCAGCACTACATATGTTGGTAAATTGAGGTCCAACTTTTTGGGTACCAAGTTCACCGTACATGACAGCCAGCCTCCATGTAATGCAGTACCCCAACCAAATAATCGATCATCTCGAAGGTTCCATTCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

199

Amino Acids

22.44

Weight (kDa)

10.52

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	123 - 192	1.4e-16	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18280 AT2G18280
fragaria_vesca	FvH4_1g13070
malus_domestica	MD02G1145300.v1.1 MD14G1114200.v1.1 MD15G1259500.v1.1
prunus_persica	Prupe.7G156400_v2.0.a1
pyrus_communis	pycom02g11500 pycom15g22700
rosa_chinensis	RchiOBHm_Chr2g0101241
rosa_laevigata	RLG00000017064
rosa_multiflora	Rmu_sc0006314.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141470
rosa_rugosa	Rorug02G0099900 Rorug02G0100000
rosa_samantha	Rh2AG145400 Rh2BG150800 Rh2CG151200 Rh2DG150900
rosa_wichuraiana	Rw2G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	506
AciI	CCGC	2 cut(s)	31, 137
AclWI	GGATC	1 cut(s)	410
AfaI	GTAC	3 cut(s)	508, 522, 552
AgsI	TTSAA	3 cut(s)	10, 206, 352
AluBI	AGCT	2 cut(s)	28, 245
AluI	AGCT	2 cut(s)	28, 245
AlwI	GGATC	1 cut(s)	410
Ama87I	CYCGRG	3 cut(s)	240, 314, 459
AoxI	GGCC	2 cut(s)	233, 362
ApeKI	GCWGC	2 cut(s)	28, 355
Asp700I	GAANNNNTTC	1 cut(s)	189
Asp718I	GGTACC	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	362, 492
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	86, 508
AsuII	TTCGAA	1 cut(s)	395
AvaI	CYCGRG	3 cut(s)	240, 314, 459
AvaII	GGWCC	1 cut(s)	492
BanI	GGYRCC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	15, 367
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BcnI	CCSGG	1 cut(s)	360
BisI	GCNGC	2 cut(s)	29, 356
BlsI	GCNGC	2 cut(s)	30, 357
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	492
BmeT110I	CYCGRG	3 cut(s)	240, 314, 459
BmgT120I	GGNCC	2 cut(s)	362, 492
BmiI	GGNNCC	4 cut(s)	129, 363, 508, 584
BmrFI	CCNGG	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	568
BsaJI	CCNNGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	326
BseCI	ATCGAT	1 cut(s)	568
BseDI	CCNNGG	1 cut(s)	359
BseMI	GCAATG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	15, 367
BshFI	GGCC	2 cut(s)	235, 364
BshNI	GGYRCC	1 cut(s)	506
BshVI	ATCGAT	1 cut(s)	568
BsiHKCI	CYCGRG	3 cut(s)	240, 314, 459
BsiSI	CCGG	1 cut(s)	359
BsnI	GGCC	2 cut(s)	235, 364
BsoBI	CYCGRG	3 cut(s)	240, 314, 459
Bsp119I	TTCGAA	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	402, 569
BspACI	CCGC	2 cut(s)	31, 137
BspANI	GGCC	2 cut(s)	235, 364
BspDI	ATCGAT	1 cut(s)	568
BspLI	GGNNCC	4 cut(s)	129, 363, 508, 584
BspPI	GGATC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	2 cut(s)	402, 569
Bst4CI	ACNGT	2 cut(s)	385, 520
BstBI	TTCGAA	1 cut(s)	395
BstC8I	GCNNGC	3 cut(s)	237, 466, 533
BstDEI	CTNAG	1 cut(s)	591
BstKTI	GATC	2 cut(s)	405, 572
BstMBI	GATC	2 cut(s)	402, 569
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	15, 367
BstXI	CCANNNNNNTGG	1 cut(s)	502
Bsu15I	ATCGAT	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	235, 364
BsuTUI	ATCGAT	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	3 cut(s)	237, 466, 533
Cfr13I	GGNCC	2 cut(s)	362, 492
ClaI	ATCGAT	1 cut(s)	568
Csp6I	GTAC	3 cut(s)	507, 521, 551
CviAII	CATG	4 cut(s)	58, 279, 524, 540
CviQI	GTAC	3 cut(s)	507, 521, 551
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	2 cut(s)	404, 571
DpnII	GATC	2 cut(s)	402, 569
Eco47I	GGWCC	1 cut(s)	492
Eco88I	CYCGRG	3 cut(s)	240, 314, 459
EcoO109I	RGGNCCY	1 cut(s)	362
FaeI	CATG	4 cut(s)	61, 282, 527, 543
FatI	CATG	4 cut(s)	57, 278, 523, 539
FauI	CCCGC	2 cut(s)	24, 144
FauNDI	CATATG	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	29, 356
Fsp4HI	GCNGC	2 cut(s)	29, 356
GluI	GCNGC	2 cut(s)	29, 356
HaeIII	GGCC	2 cut(s)	235, 364
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	4 cut(s)	61, 282, 527, 543
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	86, 508
Hpy166II	GTNNAC	2 cut(s)	77, 516
Hpy188I	TCNGA	3 cut(s)	99, 407, 448
Hpy188III	TCNNGA	7 cut(s)	23, 119, 182, 194, 314, 459, 576
Hpy8I	GTNNAC	2 cut(s)	77, 516
HpyAV	CCTTC	4 cut(s)	321, 391, 402, 573
HpyCH4III	ACNGT	2 cut(s)	385, 520
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	1 cut(s)	591
Hsp92II	CATG	4 cut(s)	61, 282, 527, 543
KpnI	GGTACC	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	402, 569
LmnI	GCTCC	3 cut(s)	54, 121, 133
LpnPI	CCDG	8 cut(s)	132, 143, 167, 179, 249, 372, 478, 545
Lsp1109I	GCAGC	2 cut(s)	15, 367
MalI	GATC	2 cut(s)	404, 571
MboI	GATC	2 cut(s)	402, 569
MboII	GAAGA	1 cut(s)	227
MluCI	AATT	3 cut(s)	185, 201, 485
MmeI	TCCRAC	3 cut(s)	77, 155, 519
MnlI	CCTC	6 cut(s)	189, 276, 288, 375, 483, 546
MroXI	GAANNNNTTC	1 cut(s)	189
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	361
NciI	CCSGG	1 cut(s)	360
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	2 cut(s)	402, 569
NlaIII	CATG	4 cut(s)	61, 282, 527, 543
NlaIV	GGNNCC	4 cut(s)	129, 363, 508, 584
NspI	RCATGY	1 cut(s)	61
NspV	TTCGAA	1 cut(s)	395
PaeR7I	CTCGAG	2 cut(s)	240, 459
PcsI	WCGNNNNNNNCGW	1 cut(s)	574
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	151
PflFI	GACNNNGTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	30, 357
PspN4I	GGNNCC	4 cut(s)	129, 363, 508, 584
PspPI	GGNCC	2 cut(s)	362, 492
PspXI	VCTCGAGB	1 cut(s)	240
PsyI	GACNNNGTC	1 cut(s)	103
RsaI	GTAC	3 cut(s)	508, 522, 552
RsaNI	GTAC	3 cut(s)	507, 521, 551
SatI	GCNGC	2 cut(s)	29, 356
Sau3AI	GATC	2 cut(s)	402, 569
Sau96I	GGNCC	2 cut(s)	362, 492
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	4 cut(s)	30, 247, 494, 584
Sfr274I	CTCGAG	2 cut(s)	240, 459
SfuI	TTCGAA	1 cut(s)	395
SinI	GGWCC	1 cut(s)	492
SlaI	CTCGAG	2 cut(s)	240, 459
SmlI	CTYRAG	2 cut(s)	240, 459
SmoI	CTYRAG	2 cut(s)	240, 459
Sse9I	AATT	3 cut(s)	185, 201, 485
SsiI	CCGC	2 cut(s)	31, 137
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	385, 520
TaqI	TCGA	5 cut(s)	241, 395, 460, 568, 577
TasI	AATT	3 cut(s)	185, 201, 485
TfiI	GAWTC	1 cut(s)	151
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	2 cut(s)	28, 355
TspDTI	ATGAA	2 cut(s)	53, 380
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	390
Tth111I	GACNNNGTC	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	492
XceI	RCATGY	1 cut(s)	61
XhoI	CTCGAG	2 cut(s)	240, 459
XmnI	GAANNNNTTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.