Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010770

Physical Location & Seq

Genomic Coordinates Reverse (-)

79742060 .. 79744786

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGTCGTTCAAACACATTGTTCGCGAGCTGAGAGAGATGAGAGATGGAATTGGGAGCATGTCGAGGAGAGTGGGTGAAAGGAGGCTTTGGCACAGTCGAACCATGTCGCATATTGCTCCTGATCTGGCTTCAACCCCTCCAACTCCTTTGATTCAACAGGGTCAGTGGGCGAATTTACCTCCAGAGTTGCTTTCGGACATAATAGAGAGGGTTGAAGAGAGTGAAACATCGTGGCCTGCTCGGTCTGCCGTTGTCTTTTGTGCTTCAGTTTGCAAGTCATGGAGGGATATCACGAGGGAGATTGTCAAAACTCCTGAAGAATGCGGAAGGCTCACATTTCCTATCTCATTGAAGCAGCCTGGGCCTCGTGAGTCTCCAATGCAGTGCTTCATCAAAAGGAATAGAGCGACTTCCACATTTTATCTGTACTTTGGTCTGGTGCCTGCTGAGGGCGCAAGAGATAAATTACTGTTAGCAGCCAAAAGGATCAGAAGGGCAACAAGCACAGAGTTTGTTATATCTTTGGTCGCAGATGATTTCTCTCGAGCTAGCAGTACATATGTTGGTAAACTGAGGTCCAACTTCTTGGGCACCAAGTTTACCATATATGATAGCCAGCCGACATTTGATGCAGTAGACCAGCCAAATAGTCGATCATCTCGAAGGTTTAATTCTAAGCAGGTATCTCCAAGAGTTCCAGCTTGTAACTACAATGTTGGGACCGTCTCTTATGAGCTCAATATTCTCCGCACAAGAGGCCCAAGAAGAATGCAGTGTGCTATGCACTCTATTCCTGTCTCTTCTATTCAGGAGGGAGGCACCGCCCCAACACCAACATTGTTCCCACAAGTCTGTGATGAACAATTTTCTCCCTCACCTAGTTTAAAAGACAAGGAGCTAGTCACAGATTTCAACTCTACACCCTCTACACCCTTTTTGCAGTCACCACTATCCAACCCGGGGGCAGAACCGCTGATTTTGAAAAACAAGTCTCCTAGGTGGCATGAGCAGCTACAATGCTGGTGCCTTAACTTCAGAGGGCGTGTTACTGTGGCTTCCGTCAAAAATTTCCAGCTTGCCGCAGCTGTTGATCCATCCCACAATGTTTCAGCTGAACAGCAAGATAGGGTAATCCTGCAGTTTGGAAAGATTGGAAAAGACATCTTCACCATGGATTACCGCTACCCGCTGTCCTGTTTCCAAGCATTCGCAATCTGCTTAAGCACCTTCGACACCAAACCAGCTTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

417

Amino Acids

46.97

Weight (kDa)

9.27

Isoelectric Point (pI)

68.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	117 - 412	1.5e-101	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18280 AT2G18280
fragaria_vesca	FvH4_1g13070
malus_domestica	MD02G1145300.v1.1 MD14G1114200.v1.1 MD15G1259500.v1.1
prunus_persica	Prupe.7G156400_v2.0.a1
pyrus_communis	pycom02g11500 pycom15g22700
rosa_chinensis	RchiOBHm_Chr2g0101241
rosa_laevigata	RLG00000017064
rosa_multiflora	Rmu_sc0006314.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141470
rosa_rugosa	Rorug02G0099900 Rorug02G0100000
rosa_samantha	Rh2AG145400 Rh2BG150800 Rh2CG151200 Rh2DG150900
rosa_wichuraiana	Rw2G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	670
AccB1I	GGYRCC	4 cut(s)	439, 590, 818, 1023
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	24
AciI	CCGC	7 cut(s)	324, 748, 822, 971, 1080, 1180, 1187
AclWI	GGATC	2 cut(s)	494, 1085
AcsI	RAATTY	2 cut(s)	172, 1066
AcuI	CTGAAG	3 cut(s)	249, 336, 1018
AfaI	GTAC	2 cut(s)	428, 556
AfiI	CCNNNNNNNGG	2 cut(s)	449, 960
AflII	CTTAAG	1 cut(s)	1219
AgsI	TTSAA	7 cut(s)	10, 132, 155, 215, 352, 913, 982
AjnI	CCWGG	1 cut(s)	358
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	4 cut(s)	378, 730, 802, 996
AlwI	GGATC	2 cut(s)	494, 1085
Ama87I	CYCGRG	2 cut(s)	543, 958
AoxI	GGCC	3 cut(s)	233, 362, 757
ApeKI	GCWGC	4 cut(s)	355, 476, 1009, 1082
ApoI	RAATTY	2 cut(s)	172, 1066
AspA2I	CCTAGG	1 cut(s)	995
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	4 cut(s)	362, 576, 720, 758
AsuC2I	CCSGG	2 cut(s)	959, 960
AsuHPI	GGTGA	4 cut(s)	86, 867, 936, 1159
AsuNHI	GCTAGC	1 cut(s)	548
AvaI	CYCGRG	2 cut(s)	543, 958
AvaII	GGWCC	2 cut(s)	576, 720
AvrII	CCTAGG	1 cut(s)	995
BaeGI	GKGCMC	1 cut(s)	593
BanI	GGYRCC	4 cut(s)	439, 590, 818, 1023
BanII	GRGCYC	1 cut(s)	738
BauI	CACGAG	2 cut(s)	292, 366
Bbv12I	GWGCWC	1 cut(s)	738
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	367, 488, 1021, 1094
BccI	CCATC	2 cut(s)	38, 1102
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	959, 960
BcoDI	GTCTC	4 cut(s)	378, 730, 802, 996
BfaI	CTAG	4 cut(s)	549, 879, 899, 996
BfmI	CTRYAG	1 cut(s)	1136
BfrI	CTTAAG	1 cut(s)	1219
BfuAI	ACCTGC	1 cut(s)	670
BisI	GCNGC	5 cut(s)	356, 477, 1010, 1080, 1083
BlnI	CCTAGG	1 cut(s)	995
BlsI	GCNGC	5 cut(s)	357, 478, 1011, 1081, 1084
Bme1390I	CCNGG	3 cut(s)	360, 959, 960
Bme18I	GGWCC	2 cut(s)	576, 720
BmeT110I	CYCGRG	2 cut(s)	543, 958
BmgT120I	GGNCC	4 cut(s)	362, 576, 720, 758
BmiI	GGNNCC	5 cut(s)	441, 592, 721, 820, 1025
BmrFI	CCNGG	3 cut(s)	360, 959, 960
BmsI	GCATC	1 cut(s)	619
BmtI	GCTAGC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	447
BpuMI	CCSGG	2 cut(s)	959, 960
BsaJI	CCNNGG	5 cut(s)	359, 958, 959, 995, 1170
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 960
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	5 cut(s)	359, 958, 959, 995, 1170
BseGI	GGATG	1 cut(s)	1094
BseLI	CCNNNNNNNGG	2 cut(s)	449, 960
BseMII	CTCAG	3 cut(s)	20, 438, 563
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	4 cut(s)	367, 488, 1021, 1094
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	3 cut(s)	235, 364, 759
BshNI	GGYRCC	4 cut(s)	439, 590, 818, 1023
BsiHKAI	GWGCWC	1 cut(s)	738
BsiHKCI	CYCGRG	2 cut(s)	543, 958
BsiSI	CCGG	1 cut(s)	959
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	2 cut(s)	449, 960
BsmAI	GTCTC	4 cut(s)	378, 730, 802, 996
BsmBI	CGTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	733
BsmI	GAATGC	3 cut(s)	326, 774, 1205
BsnI	GGCC	3 cut(s)	235, 364, 759
BsoBI	CYCGRG	2 cut(s)	543, 958
Bsp1286I	GDGCHC	2 cut(s)	593, 738
Bsp143I	GATC	4 cut(s)	121, 486, 653, 1090
Bsp19I	CCATGG	1 cut(s)	1170
Bsp68I	TCGCGA	1 cut(s)	24
BspACI	CCGC	7 cut(s)	324, 748, 822, 971, 1080, 1180, 1187
BspANI	GGCC	3 cut(s)	235, 364, 759
BspCNI	CTCAG	3 cut(s)	21, 439, 564
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	5 cut(s)	441, 592, 721, 820, 1025
BspMAI	CTGCAG	1 cut(s)	1140
BspMI	ACCTGC	1 cut(s)	670
BspOI	GCTAGC	1 cut(s)	552
BspPI	GGATC	2 cut(s)	494, 1085
BspT107I	GGYRCC	4 cut(s)	439, 590, 818, 1023
BspTI	CTTAAG	1 cut(s)	1219
BssECI	CCNNGG	5 cut(s)	359, 958, 959, 995, 1170
BssMI	GATC	4 cut(s)	121, 486, 653, 1090
BssSI	CACGAG	2 cut(s)	292, 366
BssT1I	CCWWGG	2 cut(s)	995, 1170
Bst2BI	CACGAG	2 cut(s)	292, 366
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	4 cut(s)	95, 471, 724, 1051
Bst6I	CTCTTC	2 cut(s)	210, 805
BstAFI	CTTAAG	1 cut(s)	1219
BstC8I	GCNNGC	6 cut(s)	26, 237, 444, 550, 617, 1077
BstDEI	CTNAG	4 cut(s)	29, 447, 572, 675
BstDSI	CCRYGG	1 cut(s)	1170
BstF5I	GGATG	1 cut(s)	1094
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	4 cut(s)	124, 489, 656, 1093
BstMAI	GTCTC	4 cut(s)	378, 730, 802, 996
BstMBI	GATC	4 cut(s)	121, 486, 653, 1090
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 361, 452, 756, 1009
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	3 cut(s)	358, 957, 958
BstSFI	CTRYAG	1 cut(s)	1136
BstSLI	GKGCMC	1 cut(s)	593
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	4 cut(s)	367, 488, 1021, 1094
BstXI	CCANNNNNNTGG	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	235, 364, 759
BtgI	CCRYGG	1 cut(s)	1170
BtsCI	GGATG	1 cut(s)	1094
BtsI	GCAGTG	2 cut(s)	389, 779
BtsIMutI	CAGTG	3 cut(s)	170, 389, 779
BtuMI	TCGCGA	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	6 cut(s)	26, 237, 444, 550, 617, 1077
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	4 cut(s)	362, 576, 720, 758
Cfr9I	CCCGGG	1 cut(s)	958
Csp6I	GTAC	2 cut(s)	427, 555
CviAII	CATG	5 cut(s)	58, 103, 279, 1004, 1171
CviQI	GTAC	2 cut(s)	427, 555
DdeI	CTNAG	4 cut(s)	29, 447, 572, 675
DpnI	GATC	4 cut(s)	123, 488, 655, 1092
DpnII	GATC	4 cut(s)	121, 486, 653, 1090
DraI	TTTAAA	1 cut(s)	885
Eam1104I	CTCTTC	2 cut(s)	210, 805
EarI	CTCTTC	2 cut(s)	210, 805
Ecl136II	GAGCTC	1 cut(s)	736
Eco130I	CCWWGG	2 cut(s)	995, 1170
Eco24I	GRGCYC	1 cut(s)	738
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	576, 720
Eco53kI	GAGCTC	1 cut(s)	736
Eco57I	CTGAAG	3 cut(s)	249, 336, 1018
Eco88I	CYCGRG	2 cut(s)	543, 958
EcoICRI	GAGCTC	1 cut(s)	736
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	995, 1170
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	2 cut(s)	995, 1170
Esp3I	CGTCTC	1 cut(s)	730
FaeI	CATG	5 cut(s)	61, 106, 282, 1007, 1174
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	5 cut(s)	57, 102, 278, 1003, 1170
FauI	CCCGC	1 cut(s)	1194
FauNDI	CATATG	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	5 cut(s)	356, 477, 1010, 1080, 1083
FokI	GGATG	1 cut(s)	1081
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	5 cut(s)	356, 477, 1010, 1080, 1083
FspBI	CTAG	4 cut(s)	549, 879, 899, 996
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	5 cut(s)	356, 477, 1010, 1080, 1083
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	235, 364, 759
HapII	CCGG	1 cut(s)	959
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	5 cut(s)	61, 106, 282, 1007, 1174
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	2 cut(s)	151, 371
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	4 cut(s)	86, 867, 936, 1159
Hpy166II	GTNNAC	3 cut(s)	569, 600, 637
Hpy188I	TCNGA	3 cut(s)	196, 491, 1037
Hpy188III	TCNNGA	9 cut(s)	23, 119, 182, 292, 314, 368, 543, 660, 809
Hpy8I	GTNNAC	3 cut(s)	569, 600, 637
HpyAV	CCTTC	4 cut(s)	321, 486, 657, 1237
HpyCH4III	ACNGT	4 cut(s)	95, 471, 724, 1051
HpyCH4V	TGCA	7 cut(s)	273, 382, 632, 772, 784, 940, 1138
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 361, 452, 756, 1009
HpyF3I	CTNAG	4 cut(s)	29, 447, 572, 675
Hsp92II	CATG	5 cut(s)	61, 106, 282, 1007, 1174
HspAI	GCGC	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	121, 486, 653, 1090
LmnI	GCTCC	3 cut(s)	54, 121, 895
Lsp1109I	GCAGC	4 cut(s)	367, 488, 1021, 1094
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	4 cut(s)	549, 879, 899, 996
MaeIII	GTNAC	4 cut(s)	704, 901, 942, 1045
MalI	GATC	4 cut(s)	123, 488, 655, 1092
MboI	GATC	4 cut(s)	121, 486, 653, 1090
MboII	GAAGA	5 cut(s)	227, 329, 777, 792, 1156
MhlI	GDGCHC	2 cut(s)	593, 738
MluCI	AATT	6 cut(s)	48, 172, 464, 670, 863, 1066
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	3 cut(s)	164, 603, 978
MseI	TTAA	4 cut(s)	669, 884, 1029, 1220
MspA1I	CMGCKG	4 cut(s)	973, 1085, 1112, 1189
MspCI	CTTAAG	1 cut(s)	1219
MspI	CCGG	1 cut(s)	959
MspR9I	CCNGG	3 cut(s)	360, 959, 960
Mva1269I	GAATGC	3 cut(s)	326, 774, 1205
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	5 cut(s)	245, 361, 452, 756, 1009
NciI	CCSGG	2 cut(s)	959, 960
NcoI	CCATGG	1 cut(s)	1170
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	4 cut(s)	121, 486, 653, 1090
NheI	GCTAGC	1 cut(s)	548
NlaIII	CATG	5 cut(s)	61, 106, 282, 1007, 1174
NlaIV	GGNNCC	5 cut(s)	441, 592, 721, 820, 1025
NmuCI	GTSAC	2 cut(s)	901, 942
NruI	TCGCGA	1 cut(s)	24
NspI	RCATGY	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	658
PctI	GAATGC	3 cut(s)	326, 774, 1205
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	357, 478, 1011, 1081, 1084
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	5 cut(s)	441, 592, 721, 820, 1025
PspPI	GGNCC	4 cut(s)	362, 576, 720, 758
PstI	CTGCAG	1 cut(s)	1140
PvuII	CAGCTG	2 cut(s)	1085, 1112
RruI	TCGCGA	1 cut(s)	24
RsaI	GTAC	2 cut(s)	428, 556
RsaNI	GTAC	2 cut(s)	427, 555
SacI	GAGCTC	1 cut(s)	738
SaqAI	TTAA	4 cut(s)	669, 884, 1029, 1220
SatI	GCNGC	5 cut(s)	356, 477, 1010, 1080, 1083
Sau3AI	GATC	4 cut(s)	121, 486, 653, 1090
Sau96I	GGNCC	4 cut(s)	362, 576, 720, 758
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	360, 959, 960
SduI	GDGCHC	2 cut(s)	593, 738
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	1136
Sfr274I	CTCGAG	1 cut(s)	543
SinI	GGWCC	2 cut(s)	576, 720
SlaI	CTCGAG	1 cut(s)	543
SmaI	CCCGGG	1 cut(s)	960
SmlI	CTYRAG	2 cut(s)	543, 1219
SmoI	CTYRAG	2 cut(s)	543, 1219
Sse9I	AATT	6 cut(s)	48, 172, 464, 670, 863, 1066
SsiI	CCGC	7 cut(s)	324, 748, 822, 971, 1080, 1180, 1187
SspI	AATATT	1 cut(s)	742
SspMI	CTAG	4 cut(s)	549, 879, 899, 996
SstI	GAGCTC	1 cut(s)	738
StyD4I	CCNGG	3 cut(s)	358, 957, 958
StyI	CCWWGG	2 cut(s)	995, 1170
TaaI	ACNGT	4 cut(s)	95, 471, 724, 1051
TaqI	TCGA	6 cut(s)	62, 97, 544, 652, 661, 1230
TaqII	GACCGA	1 cut(s)	231
TasI	AATT	6 cut(s)	48, 172, 464, 670, 863, 1066
TatI	WGTACW	2 cut(s)	426, 554
TauI	GCSGC	1 cut(s)	1082
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	4 cut(s)	669, 884, 1029, 1220
Tru9I	TTAA	4 cut(s)	669, 884, 1029, 1220
TscAI	CASTG	3 cut(s)	170, 389, 779
TseFI	GTSAC	2 cut(s)	901, 942
TseI	GCWGC	4 cut(s)	355, 476, 1009, 1082
Tsp45I	GTSAC	2 cut(s)	901, 942
TspDTI	ATGAA	2 cut(s)	379, 873
TspGWI	ACGGA	1 cut(s)	1048
TspMI	CCCGGG	1 cut(s)	958
TspRI	CASTG	3 cut(s)	170, 389, 779
Vha464I	CTTAAG	1 cut(s)	1219
VpaK11BI	GGWCC	2 cut(s)	576, 720
XapI	RAATTY	2 cut(s)	172, 1066
XceI	RCATGY	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	543
XmaI	CCCGGG	1 cut(s)	958
XmaJI	CCTAGG	1 cut(s)	995
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	4 cut(s)	549, 879, 899, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.