FvH4_1g13070

Tubby-like F-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
7203130 .. 7205908
2779 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13070.t1

Sequence Viewer

Length: 1254 bp
ATGTCGTTCAAACACATTGTTCGCGAGCTGAGAGAGATGAAAGATGGAATTGGGAGCATGTCGAGGAGAGTGGGTGAAAGGAAGCTTTGGCACAGCCGAACCATGTCACATATATCTCCTGATCTGGCTTCAACCACTCATGTGATTCAACAGGGCCAGTGGGCGAATCTGCCTCCGGAGTTGCTTTTTGATATAATAGAGAGGGTTGAAGAGAGTGAAGCTTCGTGGCCTGCTAGAAAATCTGTTGTCTTTTGTGCTTCGGTTTGTAAGTCGTGGAGGGATGTTACGAAGGAGATTGTCAAAACTCCCGAAGAATGTGGAAGGCTCACATTTCCTATCTCATTGAAGCAGCCGGGGCCTCGTGAGTCTCCAATGCAGTGCTTCATCAAAAGGGATAGAGCGACTTCCACATTTTATCTGTACTTCGGTCTGGTGCCTGGTGAGGGCGTGAGAGATAAAAAACTGTTAGCAGCCAAAAGGATCAGAAGGGCAACAAGCACAGAGTTTATTGTATCTTTGGTCGCAGATGATTTCTCTCGAGCTAGCAGTACATATGTTGGTAAACTGAGGTCCAACTTCTTGGGCACCAAGTTTACCATATATGATAGCCAGCCGACGACATGTGATGCAATGGTCCAAGCGAATAGTCGATCATCTCGAAGGTTTAATTCTAAGCAGGTGTCTCCTAGAGTTTCAGCGTGTACCTACAATGTTGGGACTGTCTCTTATGAACTCAATCTTCTTCGCTCAAGAGGCCCAAGAAGAATGCAGTGTGCTATGCACTCTATTCCTGTCTCTTCTATTCAGGAGGGAGGCACCGCCCCAACACCGACAATTTTCCCACAAGTCTGCGATGAACAATTTTCTCCCTCACCTAGTTTGAAAGACAAGGAGCTAGCCACAGATTTCAACTCTACACCCTCTACACCCTTTTTGCAGTCACCTCTTGCATCTCACCCTGGTGCAGAACCGCTGGTTTTGAAAAACAAGTCTCCTAGGTGGCACGAGCAGCTACAATGCTGGTGCCTTAACTTCAGAGGGCGTGTTACAGTGGCTTCTGTTAAAAATTTCCAGCTTGTCGCAGCTGTTGATCCATCCCACAATGTTTCGGCCGAACAGCAAGATAGGGTAATCCTGCAGTTTGGAAAGATTGGAAAAGACATCTTCACCATGGATTACCGCTACCCACTGTCTTGTTTCCAAGCATTCGCAATCTGCTTAAGCACCTTCGACACCAAACCAGCTTGTGAATGA

Protein Analysis

418

Amino Acids

46.93

Weight (kDa)

9.31

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 115 - 412 3.8e-100 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010770)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 667
AccB1I GGYRCC 4 cut(s) 433, 584, 815, 1023
AccII CGCG 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 3 cut(s) 819, 971, 1180
AclWI GGATC 2 cut(s) 488, 1085
AcoI YGGCCR 1 cut(s) 1110
AcsI RAATTY 1 cut(s) 1066
AcuI CTGAAG 1 cut(s) 1018
AfaI GTAC 3 cut(s) 422, 550, 703
AfiI CCNNNNNNNGG 1 cut(s) 443
AflII CTTAAG 1 cut(s) 1219
AflIII ACRYGT 1 cut(s) 620
AgsI TTSAA 8 cut(s) 10, 132, 149, 209, 346, 883, 910, 982
AjnI CCWGG 2 cut(s) 436, 958
AleI CACNNNNGTG 2 cut(s) 140, 960
AluBI AGCT 9 cut(s) 28, 85, 221, 542, 895, 1012, 1075, 1085, 1244
AluI AGCT 9 cut(s) 28, 85, 221, 542, 895, 1012, 1075, 1085, 1244
Alw26I GTCTC 5 cut(s) 372, 687, 727, 799, 996
AlwI GGATC 2 cut(s) 488, 1085
Ama87I CYCGRG 1 cut(s) 537
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 5 cut(s) 154, 227, 356, 754, 1110
ApeKI GCWGC 4 cut(s) 349, 470, 1009, 1082
ApoI RAATTY 1 cut(s) 1066
AspA2I CCTAGG 1 cut(s) 995
AspS9I GGNCC 5 cut(s) 154, 356, 570, 634, 755
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 6 cut(s) 86, 452, 864, 933, 947, 1159
AsuNHI GCTAGC 2 cut(s) 542, 895
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 2 cut(s) 570, 634
AvrII CCTAGG 1 cut(s) 995
BaeGI GKGCMC 1 cut(s) 587
BanI GGYRCC 4 cut(s) 433, 584, 815, 1023
BauI CACGAG 2 cut(s) 360, 1004
BbvI GCAGC 4 cut(s) 361, 482, 1021, 1094
BccI CCATC 2 cut(s) 38, 1102
BciT130I CCWGG 2 cut(s) 438, 960
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 5 cut(s) 372, 687, 727, 799, 996
BfaI CTAG 6 cut(s) 234, 543, 687, 876, 896, 996
BfmI CTRYAG 1 cut(s) 1136
BfrI CTTAAG 1 cut(s) 1219
BfuAI ACCTGC 1 cut(s) 667
BisI GCNGC 4 cut(s) 350, 471, 1010, 1083
BlnI CCTAGG 1 cut(s) 995
BlsI GCNGC 4 cut(s) 351, 472, 1011, 1084
Bme1390I CCNGG 3 cut(s) 354, 438, 960
Bme18I GGWCC 2 cut(s) 570, 634
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 5 cut(s) 154, 356, 570, 634, 755
BmiI GGNNCC 5 cut(s) 357, 435, 586, 817, 1025
BmrFI CCNGG 3 cut(s) 354, 438, 960
BmsI GCATC 2 cut(s) 616, 959
BmtI GCTAGC 2 cut(s) 546, 899
BpuEI CTTGAG 1 cut(s) 733
BpuMI CCSGG 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 353, 958, 995, 1170
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 636
BseAI TCCGGA 1 cut(s) 175
BseBI CCWGG 2 cut(s) 438, 960
BseDI CCNNGG 4 cut(s) 353, 958, 995, 1170
BseGI GGATG 2 cut(s) 286, 1094
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 2 cut(s) 20, 557
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 587
BseX3I CGGCCG 1 cut(s) 1110
BseXI GCAGC 4 cut(s) 361, 482, 1021, 1094
BsgI GTGCAG 1 cut(s) 984
Bsh1236I CGCG 1 cut(s) 24
Bsh1285I CGRYCG 1 cut(s) 1113
BshFI GGCC 5 cut(s) 156, 229, 358, 756, 1112
BshNI GGYRCC 4 cut(s) 433, 584, 815, 1023
BsiEI CGRYCG 1 cut(s) 1113
BsiHKCI CYCGRG 1 cut(s) 537
BsiSI CCGG 2 cut(s) 176, 353
BslFI GGGAC 1 cut(s) 730
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 5 cut(s) 372, 687, 727, 799, 996
BsmFI GGGAC 1 cut(s) 730
BsmI GAATGC 2 cut(s) 771, 1205
BsnI GGCC 5 cut(s) 156, 229, 358, 756, 1112
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 1 cut(s) 587
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 4 cut(s) 121, 480, 650, 1090
Bsp19I CCATGG 1 cut(s) 1170
Bsp68I TCGCGA 1 cut(s) 24
BspACI CCGC 3 cut(s) 819, 971, 1180
BspANI GGCC 5 cut(s) 156, 229, 358, 756, 1112
BspCNI CTCAG 2 cut(s) 21, 558
BspEI TCCGGA 1 cut(s) 175
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 5 cut(s) 357, 435, 586, 817, 1025
BspMAI CTGCAG 1 cut(s) 1140
BspMI ACCTGC 1 cut(s) 667
BspOI GCTAGC 2 cut(s) 546, 899
BspPI GGATC 2 cut(s) 488, 1085
BspT107I GGYRCC 4 cut(s) 433, 584, 815, 1023
BspTI CTTAAG 1 cut(s) 1219
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 4 cut(s) 353, 958, 995, 1170
BssMI GATC 4 cut(s) 121, 480, 650, 1090
BssSI CACGAG 2 cut(s) 360, 1004
BssT1I CCWWGG 2 cut(s) 995, 1170
Bst2BI CACGAG 2 cut(s) 360, 1004
Bst2UI CCWGG 2 cut(s) 438, 960
Bst4CI ACNGT 4 cut(s) 465, 721, 1051, 1191
Bst6I CTCTTC 2 cut(s) 204, 802
BstAFI CTTAAG 1 cut(s) 1219
BstC8I GCNNGC 5 cut(s) 26, 231, 544, 611, 897
BstDEI CTNAG 3 cut(s) 29, 566, 672
BstDSI CCRYGG 1 cut(s) 1170
BstF5I GGATG 2 cut(s) 286, 1094
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 4 cut(s) 124, 483, 653, 1093
BstMAI GTCTC 5 cut(s) 372, 687, 727, 799, 996
BstMBI GATC 4 cut(s) 121, 480, 650, 1090
BstMCI CGRYCG 1 cut(s) 1113
BstMWI GCNNNNNNNGC 3 cut(s) 355, 753, 1009
BstNI CCWGG 2 cut(s) 438, 960
BstNSI RCATGY 2 cut(s) 61, 624
BstSCI CCNGG 3 cut(s) 352, 436, 958
BstSFI CTRYAG 1 cut(s) 1136
BstSLI GKGCMC 1 cut(s) 587
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 4 cut(s) 361, 482, 1021, 1094
BstXI CCANNNNNNTGG 1 cut(s) 580
BstZI CGGCCG 1 cut(s) 1110
BsuRI GGCC 5 cut(s) 156, 229, 358, 756, 1112
BtgI CCRYGG 1 cut(s) 1170
BtgZI GCGATG 1 cut(s) 867
BtsCI GGATG 2 cut(s) 286, 1094
BtsI GCAGTG 2 cut(s) 383, 776
BtsIMutI CAGTG 5 cut(s) 164, 383, 776, 1056, 1187
BtuMI TCGCGA 1 cut(s) 24
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 5 cut(s) 26, 231, 544, 611, 897
Cfr13I GGNCC 5 cut(s) 154, 356, 570, 634, 755
Csp6I GTAC 3 cut(s) 421, 549, 702
CviAII CATG 5 cut(s) 58, 103, 140, 621, 1171
CviQI GTAC 3 cut(s) 421, 549, 702
DdeI CTNAG 3 cut(s) 29, 566, 672
DpnI GATC 4 cut(s) 123, 482, 652, 1092
DpnII GATC 4 cut(s) 121, 480, 650, 1090
EaeI YGGCCR 1 cut(s) 1110
EagI CGGCCG 1 cut(s) 1110
Eam1104I CTCTTC 2 cut(s) 204, 802
EarI CTCTTC 2 cut(s) 204, 802
EclXI CGGCCG 1 cut(s) 1110
Eco130I CCWWGG 2 cut(s) 995, 1170
Eco47I GGWCC 2 cut(s) 570, 634
Eco52I CGGCCG 1 cut(s) 1110
Eco57I CTGAAG 1 cut(s) 1018
Eco88I CYCGRG 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 356
EcoRII CCWGG 2 cut(s) 436, 958
EcoT14I CCWWGG 2 cut(s) 995, 1170
ErhI CCWWGG 2 cut(s) 995, 1170
FaeI CATG 5 cut(s) 61, 106, 143, 624, 1174
FaqI GGGAC 1 cut(s) 730
FatI CATG 5 cut(s) 57, 102, 139, 620, 1170
FauNDI CATATG 1 cut(s) 553
Fnu4HI GCNGC 4 cut(s) 350, 471, 1010, 1083
FokI GGATG 2 cut(s) 293, 1081
Fsp4HI GCNGC 4 cut(s) 350, 471, 1010, 1083
FspBI CTAG 6 cut(s) 234, 543, 687, 876, 896, 996
GluI GCNGC 4 cut(s) 350, 471, 1010, 1083
HaeIII GGCC 5 cut(s) 156, 229, 358, 756, 1112
HapII CCGG 2 cut(s) 176, 353
Hin1II CATG 5 cut(s) 61, 106, 143, 624, 1174
HindIII AAGCTT 2 cut(s) 83, 219
HinfI GANTC 3 cut(s) 145, 166, 365
HpaII CCGG 2 cut(s) 176, 353
HphI GGTGA 6 cut(s) 86, 452, 864, 933, 947, 1159
Hpy166II GTNNAC 3 cut(s) 563, 594, 702
Hpy188I TCNGA 2 cut(s) 485, 1037
Hpy188III TCNNGA 9 cut(s) 23, 119, 176, 308, 362, 537, 657, 750, 806
Hpy8I GTNNAC 3 cut(s) 563, 594, 702
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 5 cut(s) 283, 315, 480, 654, 1237
HpyCH4III ACNGT 4 cut(s) 465, 721, 1051, 1191
HpyCH4V TGCA 8 cut(s) 376, 629, 769, 781, 937, 950, 965, 1138
HpyF10VI GCNNNNNNNGC 3 cut(s) 355, 753, 1009
HpyF3I CTNAG 3 cut(s) 29, 566, 672
Hsp92II CATG 5 cut(s) 61, 106, 143, 624, 1174
Kpn2I TCCGGA 1 cut(s) 175
Kzo9I GATC 4 cut(s) 121, 480, 650, 1090
LmnI GCTCC 2 cut(s) 54, 892
Lsp1109I GCAGC 4 cut(s) 361, 482, 1021, 1094
LweI GCATC 2 cut(s) 616, 959
MaeI CTAG 6 cut(s) 234, 543, 687, 876, 896, 996
MaeIII GTNAC 4 cut(s) 105, 283, 939, 1045
MalI GATC 4 cut(s) 123, 482, 652, 1092
MboI GATC 4 cut(s) 121, 480, 650, 1090
MboII GAAGA 7 cut(s) 221, 323, 731, 734, 774, 789, 1156
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 5 cut(s) 48, 667, 834, 860, 1066
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 597
MroI TCCGGA 1 cut(s) 175
MseI TTAA 4 cut(s) 666, 1029, 1062, 1220
MslI CAYNNNNRTG 2 cut(s) 140, 960
MspA1I CMGCKG 2 cut(s) 973, 1085
MspCI CTTAAG 1 cut(s) 1219
MspI CCGG 2 cut(s) 176, 353
MspR9I CCNGG 3 cut(s) 354, 438, 960
Mva1269I GAATGC 2 cut(s) 771, 1205
MvaI CCWGG 2 cut(s) 438, 960
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 355, 753, 1009
NciI CCSGG 1 cut(s) 354
NcoI CCATGG 1 cut(s) 1170
NdeI CATATG 1 cut(s) 553
NdeII GATC 4 cut(s) 121, 480, 650, 1090
NheI GCTAGC 2 cut(s) 542, 895
NlaIII CATG 5 cut(s) 61, 106, 143, 624, 1174
NlaIV GGNNCC 5 cut(s) 357, 435, 586, 817, 1025
NmuCI GTSAC 2 cut(s) 105, 939
NruI TCGCGA 1 cut(s) 24
NspI RCATGY 2 cut(s) 61, 624
OliI CACNNNNGTG 2 cut(s) 140, 960
PaeR7I CTCGAG 1 cut(s) 537
PaqCI CACCTGC 1 cut(s) 667
PciI ACATGT 1 cut(s) 620
PcsI WCGNNNNNNNCGW 1 cut(s) 655
PctI GAATGC 2 cut(s) 771, 1205
PfeI GAWTC 2 cut(s) 145, 166
PkrI GCNGC 4 cut(s) 351, 472, 1011, 1084
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PscI ACATGT 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 436, 958
PspGI CCWGG 2 cut(s) 436, 958
PspN4I GGNNCC 5 cut(s) 357, 435, 586, 817, 1025
PspPI GGNCC 5 cut(s) 154, 356, 570, 634, 755
PstI CTGCAG 1 cut(s) 1140
PvuII CAGCTG 1 cut(s) 1085
RruI TCGCGA 1 cut(s) 24
RsaI GTAC 3 cut(s) 422, 550, 703
RsaNI GTAC 3 cut(s) 421, 549, 702
RseI CAYNNNNRTG 2 cut(s) 140, 960
SaqAI TTAA 4 cut(s) 666, 1029, 1062, 1220
SatI GCNGC 4 cut(s) 350, 471, 1010, 1083
Sau3AI GATC 4 cut(s) 121, 480, 650, 1090
Sau96I GGNCC 5 cut(s) 154, 356, 570, 634, 755
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 354, 438, 960
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 2 cut(s) 616, 959
SfcI CTRYAG 1 cut(s) 1136
Sfr274I CTCGAG 1 cut(s) 537
SinI GGWCC 2 cut(s) 570, 634
SlaI CTCGAG 1 cut(s) 537
SmiMI CAYNNNNRTG 2 cut(s) 140, 960
SmlI CTYRAG 3 cut(s) 537, 748, 1219
SmoI CTYRAG 3 cut(s) 537, 748, 1219
Sse9I AATT 5 cut(s) 48, 667, 834, 860, 1066
SsiI CCGC 3 cut(s) 819, 971, 1180
SspMI CTAG 6 cut(s) 234, 543, 687, 876, 896, 996
StyD4I CCNGG 3 cut(s) 352, 436, 958
StyI CCWWGG 2 cut(s) 995, 1170
TaaI ACNGT 4 cut(s) 465, 721, 1051, 1191
TaqI TCGA 5 cut(s) 62, 538, 649, 658, 1230
TaqII GACCGA 1 cut(s) 416
TasI AATT 5 cut(s) 48, 667, 834, 860, 1066
TatI WGTACW 2 cut(s) 420, 548
TfiI GAWTC 2 cut(s) 145, 166
Tru1I TTAA 4 cut(s) 666, 1029, 1062, 1220
Tru9I TTAA 4 cut(s) 666, 1029, 1062, 1220
TscAI CASTG 5 cut(s) 164, 383, 776, 1056, 1194
TseFI GTSAC 2 cut(s) 105, 939
TseI GCWGC 4 cut(s) 349, 470, 1009, 1082
Tsp45I GTSAC 2 cut(s) 105, 939
TspDTI ATGAA 4 cut(s) 53, 373, 744, 870
TspRI CASTG 5 cut(s) 164, 383, 776, 1056, 1194
Vha464I CTTAAG 1 cut(s) 1219
VpaK11BI GGWCC 2 cut(s) 570, 634
XapI RAATTY 1 cut(s) 1066
XceI RCATGY 2 cut(s) 61, 624
XhoI CTCGAG 1 cut(s) 537
XmaJI CCTAGG 1 cut(s) 995
XspI CTAG 6 cut(s) 234, 543, 687, 876, 896, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.