Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010770

Physical Location & Seq

Genomic Coordinates Reverse (-)

8504374 .. 8505282

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0100000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGATGAAGAGAGAAGAGTGTCAATCTCCTATAGAAACCATCCTCAACCCTAATTTGATCGAACCCAAAGAGGAGGACACTATTCCCACCCATGTTCCCTATATTGACACCCCACAAGAAGCTGTGATAATCGGCGACGATCCTCGCTGGCGACGAAATCACTGTGCTTGTGAAACAAACCAAGTTGGGGATGGAGAAATTAGGGTTTCTAGGGCACCCAAAAGGCTCAAAACTTTGGATGAAATTAGGGTTTGTAAATCCAAACCCTCCAGCAGTAATAATGCTAGTGCTGAAGTTGGTTCTTTTGTTTGCGAAATCTGCGTCGAGCCCAAGTCTGTTCTTGATTCATTTGGGATCAAAAACTGTAGCCATGCTTACTGTTCCGACTGTGTGGTCAGTTACGTGTCCTCCAAGCTTCAGGACAATGTCACCACCATTGGGTGCCCTGTTCCTGACTGCAGGGGATCCCTGGAGCCAGAGCACTGTCTTACGATTCTCCCACCGGAGTTGTTTCTCCTGTGGGGGAAGGCCTTGTGTGAGGCTGTGTTTGCGGATTCGGATGACTATTGCAGGATCTTCTACTGCCCATTTAAGGATTGCTCGGCAATGTTGATTGAGGATGGGATTGAAGAGGTTGATCTTGTGAGGGAATCGGAGTGCCCACACTGCTGGAGGTTGTTCTGTGCTCGGTGTAGGGTTCCGTGGCACGCGGATATCGATTGTGAGGAGTTTCAGGAGCTGAATAAGGATGAGAGGAGGAAAGAAGACTTCATGTTGATACAGCTTGCCAAGGATAAAAAGTGGAGAAGATGCCCCAAGTGTAGGTTCTATGTCGAACGATCGGAGGGTTGCAAGTTCATGAAGTGTAGGTCAGTGTTATCTAACACTACTCTTATCATTGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

302

Amino Acids

34.57

Weight (kDa)

5.27

Isoelectric Point (pI)

61.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	192 - 241	7.1e-08	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18280 AT2G18280
fragaria_vesca	FvH4_1g13070
malus_domestica	MD02G1145300.v1.1 MD14G1114200.v1.1 MD15G1259500.v1.1
prunus_persica	Prupe.7G156400_v2.0.a1
pyrus_communis	pycom02g11500 pycom15g22700
rosa_chinensis	RchiOBHm_Chr2g0101241
rosa_laevigata	RLG00000017064
rosa_multiflora	Rmu_sc0006314.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141470
rosa_rugosa	Rorug02G0099900 Rorug02G0100000
rosa_samantha	Rh2AG145400 Rh2BG150800 Rh2CG151200 Rh2DG150900
rosa_wichuraiana	Rw2G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
AccB1I	GGYRCC	2 cut(s)	214, 441
AccII	CGCG	1 cut(s)	710
AciI	CCGC	2 cut(s)	551, 710
AclWI	GGATC	5 cut(s)	134, 362, 459, 472, 581
AcuI	CTGAAG	2 cut(s)	312, 401
AfiI	CCNNNNNNNGG	4 cut(s)	187, 438, 592, 822
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	468
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AluBI	AGCT	4 cut(s)	122, 415, 739, 784
AluI	AGCT	4 cut(s)	122, 415, 739, 784
Alw21I	GWGCWC	2 cut(s)	483, 688
AlwI	GGATC	5 cut(s)	134, 362, 459, 472, 581
AlwNI	CAGNNNCTG	1 cut(s)	739
AoxI	GGCC	1 cut(s)	528
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
AsuHPI	GGTGA	1 cut(s)	421
BaeGI	GKGCMC	3 cut(s)	217, 446, 662
BamHI	GGATCC	1 cut(s)	464
BanI	GGYRCC	2 cut(s)	214, 441
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	2 cut(s)	483, 688
BccI	CCATC	3 cut(s)	47, 185, 614
BciT130I	CCWGG	1 cut(s)	470
BfaI	CTAG	2 cut(s)	210, 285
BfmI	CTRYAG	3 cut(s)	30, 364, 457
Bme1390I	CCNGG	1 cut(s)	470
BmiI	GGNNCC	5 cut(s)	216, 443, 466, 474, 699
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	771
BpmI	CTGGAG	3 cut(s)	253, 491, 691
Bsa29I	ATCGAT	1 cut(s)	717
BsaAI	YACGTR	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	468, 701, 789
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 438, 592, 822
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	470
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	3 cut(s)	468, 701, 789
BseGI	GGATG	6 cut(s)	39, 196, 244, 565, 625, 754
BseLI	CCNNNNNNNGG	4 cut(s)	187, 438, 592, 822
BseMI	GCAATG	1 cut(s)	612
BseRI	GAGGAG	3 cut(s)	86, 740, 769
BseSI	GKGCMC	3 cut(s)	217, 446, 662
Bsh1236I	CGCG	1 cut(s)	710
Bsh1285I	CGRYCG	1 cut(s)	842
BshFI	GGCC	1 cut(s)	530
BshNI	GGYRCC	2 cut(s)	214, 441
BshVI	ATCGAT	1 cut(s)	717
BsiEI	CGRYCG	1 cut(s)	842
BsiHKAI	GWGCWC	2 cut(s)	483, 688
BsiSI	CCGG	1 cut(s)	503
BslI	CCNNNNNNNGG	4 cut(s)	187, 438, 592, 822
BsnI	GGCC	1 cut(s)	530
Bsp1286I	GDGCHC	6 cut(s)	217, 330, 446, 483, 662, 688
Bsp143I	GATC	7 cut(s)	57, 139, 354, 464, 573, 637, 839
BspACI	CCGC	2 cut(s)	551, 710
BspANI	GGCC	1 cut(s)	530
BspDI	ATCGAT	1 cut(s)	717
BspFNI	CGCG	1 cut(s)	710
BspHI	TCATGA	1 cut(s)	858
BspLI	GGNNCC	5 cut(s)	216, 443, 466, 474, 699
BspMAI	CTGCAG	1 cut(s)	461
BspPI	GGATC	5 cut(s)	134, 362, 459, 472, 581
BspT107I	GGYRCC	2 cut(s)	214, 441
BsrDI	GCAATG	1 cut(s)	612
BssECI	CCNNGG	3 cut(s)	468, 701, 789
BssMI	GATC	7 cut(s)	57, 139, 354, 464, 573, 637, 839
BssT1I	CCWWGG	1 cut(s)	789
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	5 cut(s)	164, 365, 380, 389, 485
Bst6I	CTCTTC	3 cut(s)	2, 9, 624
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	149, 708, 786
BstDSI	CCRYGG	1 cut(s)	701
BstF5I	GGATG	6 cut(s)	39, 196, 244, 565, 625, 754
BstFNI	CGCG	1 cut(s)	710
BstKTI	GATC	7 cut(s)	60, 142, 357, 467, 576, 640, 842
BstMBI	GATC	7 cut(s)	57, 139, 354, 464, 573, 637, 839
BstMCI	CGRYCG	1 cut(s)	842
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 548, 666
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	3 cut(s)	30, 364, 457
BstSLI	GKGCMC	3 cut(s)	217, 446, 662
BstUI	CGCG	1 cut(s)	710
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	2 cut(s)	464, 573
BstXI	CCANNNNNNTGG	1 cut(s)	669
BstYI	RGATCY	2 cut(s)	464, 573
Bsu15I	ATCGAT	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	530
BsuTUI	ATCGAT	1 cut(s)	717
BtgI	CCRYGG	1 cut(s)	701
BtsCI	GGATG	6 cut(s)	39, 196, 244, 565, 625, 754
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	4 cut(s)	160, 481, 664, 879
Cac8I	GCNNGC	3 cut(s)	149, 708, 786
CaiI	CAGNNNCTG	1 cut(s)	739
CciI	TCATGA	1 cut(s)	858
ClaI	ATCGAT	1 cut(s)	717
CseI	GACGC	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	4 cut(s)	92, 371, 772, 859
DpnI	GATC	7 cut(s)	59, 141, 356, 466, 575, 639, 841
DpnII	GATC	7 cut(s)	57, 139, 354, 464, 573, 637, 839
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	3 cut(s)	2, 9, 624
EarI	CTCTTC	3 cut(s)	2, 9, 624
Eco130I	CCWWGG	1 cut(s)	789
Eco147I	AGGCCT	1 cut(s)	530
Eco24I	GRGCYC	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	715
Eco57I	CTGAAG	2 cut(s)	312, 401
EcoRII	CCWGG	1 cut(s)	468
EcoRV	GATATC	1 cut(s)	715
EcoT14I	CCWWGG	1 cut(s)	789
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	4 cut(s)	95, 374, 775, 862
FaiI	YATR	7 cut(s)	32, 93, 102, 372, 773, 831, 860
FatI	CATG	4 cut(s)	91, 370, 771, 858
FokI	GGATG	6 cut(s)	26, 203, 251, 572, 632, 761
FriOI	GRGCYC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	210, 285
GsuI	CTGGAG	3 cut(s)	253, 491, 691
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	310
Hin1II	CATG	4 cut(s)	95, 374, 775, 862
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	4 cut(s)	344, 493, 554, 650
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	1 cut(s)	421
Hpy188I	TCNGA	4 cut(s)	385, 559, 655, 844
Hpy188III	TCNNGA	5 cut(s)	341, 419, 452, 734, 859
Hpy99I	CGWCG	3 cut(s)	140, 156, 326
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	5 cut(s)	164, 365, 380, 389, 485
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	459, 570, 852
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 548, 666
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	4 cut(s)	95, 374, 775, 862
Kzo9I	GATC	7 cut(s)	57, 139, 354, 464, 573, 637, 839
LmnI	GCTCC	2 cut(s)	472, 736
LweI	GCATC	1 cut(s)	800
MaeI	CTAG	2 cut(s)	210, 285
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	398, 427
MalI	GATC	7 cut(s)	59, 141, 356, 466, 575, 639, 841
MboI	GATC	7 cut(s)	57, 139, 354, 464, 573, 637, 839
MboII	GAAGA	6 cut(s)	19, 26, 568, 641, 776, 819
MflI	RGATCY	2 cut(s)	464, 573
MhlI	GDGCHC	6 cut(s)	217, 330, 446, 483, 662, 688
MluCI	AATT	3 cut(s)	52, 198, 243
MmeI	TCCRAC	1 cut(s)	408
MseI	TTAA	1 cut(s)	591
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	710
MwoI	GCNNNNNNNGC	3 cut(s)	318, 548, 666
NdeII	GATC	7 cut(s)	57, 139, 354, 464, 573, 637, 839
NlaIII	CATG	4 cut(s)	95, 374, 775, 862
NlaIV	GGNNCC	5 cut(s)	216, 443, 466, 474, 699
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	1 cut(s)	427
PagI	TCATGA	1 cut(s)	858
PceI	AGGCCT	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	2 cut(s)	151, 714
PfeI	GAWTC	4 cut(s)	344, 493, 554, 650
PflFI	GACNNNGTC	1 cut(s)	425
Ple19I	CGATCG	1 cut(s)	842
Ppu21I	YACGTR	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	5 cut(s)	216, 443, 466, 474, 699
PstI	CTGCAG	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	2 cut(s)	464, 573
PsyI	GACNNNGTC	1 cut(s)	425
PvuI	CGATCG	1 cut(s)	842
SaqAI	TTAA	1 cut(s)	591
Sau3AI	GATC	7 cut(s)	57, 139, 354, 464, 573, 637, 839
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	6 cut(s)	217, 330, 446, 483, 662, 688
SetI	ASST	9 cut(s)	124, 405, 417, 636, 677, 741, 786, 827, 872
SfaNI	GCATC	1 cut(s)	800
SfcI	CTRYAG	3 cut(s)	30, 364, 457
Sse9I	AATT	3 cut(s)	52, 198, 243
SseBI	AGGCCT	1 cut(s)	530
SsiI	CCGC	2 cut(s)	551, 710
SspMI	CTAG	2 cut(s)	210, 285
StuI	AGGCCT	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	5 cut(s)	164, 365, 380, 389, 485
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	4 cut(s)	60, 324, 717, 834
TasI	AATT	3 cut(s)	52, 198, 243
TfiI	GAWTC	4 cut(s)	344, 493, 554, 650
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	4 cut(s)	167, 488, 671, 879
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	6 cut(s)	20, 255, 336, 760, 847, 875
TspGWI	ACGGA	1 cut(s)	690
TspRI	CASTG	4 cut(s)	167, 488, 671, 879
Tth111I	GACNNNGTC	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XspI	CTAG	2 cut(s)	210, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.