Rw2G011340

Tubby-like F-box protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
11443669 .. 11446606
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011340.1

Sequence Viewer

Length: 1254 bp
ATGTCGTTCAAACACATTGTTCGTGAGCTGAGAGAGATGAGAGATGGAATTGGGAGCATGTCGAGGAGAGTGGGTGAAAGGAGGCTTTGGCACAGTCGAACCATGTCGCATATTGCTCCTGATCTGGCTTCGACACCTCCAACTCCTTTGATTCAACAGGGTCAGTGGGCGAATTTACCTCCGGAGTTGCTTTCGGACATAATAGAGAGGGTAGAAGAGAGTGAGACATCGTGGCCTGCTCGGTCTGCCGTTGTCTTTTGTGCTTCAGTTTGCAAGTCATGGAGGGATATTACGAGGGAGATTGTCAAAACTCCTGAAGAATGCGGAAGGCTCACATTTCCTATCTCATTGAAGCAGCCCGGGCCTCGTGAGTCTCCAATACAGTGCTTCATCAAAAGGAATAGAGCGACTTCCACATTTTATCTGTACTTTGGTCTGGTGCCTGCTGAGGGCGCGAGAGATAAATTACTGTTAGCAGCCAAAAGGATCAGAAGGGCAACAAGCACAGAGTTTGTTATATCTTTGGTCGCAGATGATTTCTCTCGAGCTAGCAGTACATATGTTGGTAAACTGAGGTCCAACTTCTTGGGCACCAAGTTTACCATATATGATAGCCAGCCGACATGTGATGCAGTAGACCAGCCAAATAGTCGATCATCTCGAAGGTTTAATTCTAAGCAGGTATCTCCAAGAGTTCCAGCGTGTAACTACAATGTTGGGACTGTCTCTTATGAGCTCAATATCCTCCGCACAAGAGGCCCAAGAAGAATGCAGTGTGCTATGCACTCTATTCCTGTCTCTTCTATTCAGGAGGGAGGCACCGCCCCGACACCAACATTGTTCCCACAAGTCTATGATGAACAGTTTTCTCCCTCACCTAGTTTAAAAGACAAGGAGCTAGTCACAGATTTCAACTCTACACCCTCTACACCCTTTTTGCAGTCACCACTATCCAACCCGGGTGCAGAACCGCTGATTTTGAAAAACAAGTCTCCTAGGTGGCATGAGCAGCTACAATGCTGGTGCCTTAACTTCAGAGGGCGTGTTACTGTGGCTTCCGTCAAAAATTTCCAGCTTGCCGCAGCTGTTGATCCATCCCACAATGTTTCAGCTGAACAGCAAGATAGGGTAATCCTGCAGTTTGGAAAGATTGGAAAAGACATCTTCACCATGGATTACCGCTACCCGCTGTCCTGTTTCCAGGCATTCGCAATCTGCTTAAGCACCTTCGACACCAAACCAGCTTGTGAATGA

Protein Analysis

417

Amino Acids

46.97

Weight (kDa)

9.26

Isoelectric Point (pI)

68.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 117 - 412 6.3e-102 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010770)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 670
AccB1I GGYRCC 4 cut(s) 439, 590, 818, 1023
AccI GTMKAC 1 cut(s) 636
AccII CGCG 1 cut(s) 455
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 7 cut(s) 324, 748, 822, 971, 1080, 1180, 1187
AclWI GGATC 2 cut(s) 494, 1085
AcsI RAATTY 2 cut(s) 172, 1066
AcuI CTGAAG 3 cut(s) 249, 336, 1018
AfaI GTAC 2 cut(s) 428, 556
AfiI CCNNNNNNNGG 1 cut(s) 449
AflII CTTAAG 1 cut(s) 1219
AflIII ACRYGT 1 cut(s) 623
AgsI TTSAA 5 cut(s) 10, 155, 352, 913, 982
AjnI CCWGG 1 cut(s) 1200
AluBI AGCT 9 cut(s) 28, 548, 736, 898, 1012, 1075, 1085, 1112, 1244
AluI AGCT 9 cut(s) 28, 548, 736, 898, 1012, 1075, 1085, 1112, 1244
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 5 cut(s) 218, 378, 730, 802, 996
AlwI GGATC 2 cut(s) 494, 1085
Ama87I CYCGRG 3 cut(s) 359, 543, 958
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 3 cut(s) 233, 362, 757
ApeKI GCWGC 4 cut(s) 355, 476, 1009, 1082
ApoI RAATTY 2 cut(s) 172, 1066
AspA2I CCTAGG 1 cut(s) 995
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 3 cut(s) 362, 576, 758
AsuC2I CCSGG 4 cut(s) 360, 361, 959, 960
AsuHPI GGTGA 4 cut(s) 86, 867, 936, 1159
AsuNHI GCTAGC 1 cut(s) 548
AvaI CYCGRG 3 cut(s) 359, 543, 958
AvaII GGWCC 1 cut(s) 576
AvrII CCTAGG 1 cut(s) 995
BaeGI GKGCMC 1 cut(s) 593
BanI GGYRCC 4 cut(s) 439, 590, 818, 1023
BanII GRGCYC 1 cut(s) 738
BauI CACGAG 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 738
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 367, 488, 1021, 1094
BccI CCATC 2 cut(s) 38, 1102
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 1202
BcnI CCSGG 4 cut(s) 360, 361, 959, 960
BcoDI GTCTC 5 cut(s) 218, 378, 730, 802, 996
BfaI CTAG 4 cut(s) 549, 879, 899, 996
BfmI CTRYAG 1 cut(s) 1136
BfrI CTTAAG 1 cut(s) 1219
BfuAI ACCTGC 1 cut(s) 670
BisI GCNGC 5 cut(s) 356, 477, 1010, 1080, 1083
BlnI CCTAGG 1 cut(s) 995
BlsI GCNGC 5 cut(s) 357, 478, 1011, 1081, 1084
Bme1390I CCNGG 5 cut(s) 360, 361, 959, 960, 1202
Bme18I GGWCC 1 cut(s) 576
BmeT110I CYCGRG 3 cut(s) 359, 543, 958
BmgT120I GGNCC 3 cut(s) 362, 576, 758
BmiI GGNNCC 4 cut(s) 441, 592, 820, 1025
BmrFI CCNGG 5 cut(s) 360, 361, 959, 960, 1202
BmsI GCATC 1 cut(s) 619
BmtI GCTAGC 1 cut(s) 552
Bpu10I CCTNAGC 1 cut(s) 447
BpuMI CCSGG 4 cut(s) 360, 361, 959, 960
BsaJI CCNNGG 4 cut(s) 359, 958, 995, 1170
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 449
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 1 cut(s) 1202
BseDI CCNNGG 4 cut(s) 359, 958, 995, 1170
BseGI GGATG 1 cut(s) 1094
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 3 cut(s) 20, 438, 563
BseRI GAGGAG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 593
BseXI GCAGC 4 cut(s) 367, 488, 1021, 1094
BsgI GTGCAG 1 cut(s) 984
Bsh1236I CGCG 1 cut(s) 455
BshFI GGCC 3 cut(s) 235, 364, 759
BshNI GGYRCC 4 cut(s) 439, 590, 818, 1023
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 3 cut(s) 359, 543, 958
BsiSI CCGG 3 cut(s) 182, 360, 959
BslFI GGGAC 1 cut(s) 733
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 5 cut(s) 218, 378, 730, 802, 996
BsmFI GGGAC 1 cut(s) 733
BsmI GAATGC 3 cut(s) 326, 774, 1205
BsnI GGCC 3 cut(s) 235, 364, 759
BsoBI CYCGRG 3 cut(s) 359, 543, 958
Bsp1286I GDGCHC 2 cut(s) 593, 738
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 4 cut(s) 121, 486, 653, 1090
Bsp19I CCATGG 1 cut(s) 1170
BspACI CCGC 7 cut(s) 324, 748, 822, 971, 1080, 1180, 1187
BspANI GGCC 3 cut(s) 235, 364, 759
BspCNI CTCAG 3 cut(s) 21, 439, 564
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 4 cut(s) 441, 592, 820, 1025
BspMAI CTGCAG 1 cut(s) 1140
BspMI ACCTGC 1 cut(s) 670
BspOI GCTAGC 1 cut(s) 552
BspPI GGATC 2 cut(s) 494, 1085
BspT107I GGYRCC 4 cut(s) 439, 590, 818, 1023
BspTI CTTAAG 1 cut(s) 1219
BssECI CCNNGG 4 cut(s) 359, 958, 995, 1170
BssMI GATC 4 cut(s) 121, 486, 653, 1090
BssSI CACGAG 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 995, 1170
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 1202
Bst4CI ACNGT 6 cut(s) 95, 384, 471, 724, 864, 1051
Bst6I CTCTTC 2 cut(s) 210, 805
BstAFI CTTAAG 1 cut(s) 1219
BstC8I GCNNGC 5 cut(s) 237, 444, 550, 617, 1077
BstDEI CTNAG 4 cut(s) 29, 447, 572, 675
BstDSI CCRYGG 1 cut(s) 1170
BstF5I GGATG 1 cut(s) 1094
BstFNI CGCG 1 cut(s) 455
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 4 cut(s) 124, 489, 656, 1093
BstMAI GTCTC 5 cut(s) 218, 378, 730, 802, 996
BstMBI GATC 4 cut(s) 121, 486, 653, 1090
BstMWI GCNNNNNNNGC 5 cut(s) 245, 361, 452, 756, 1009
BstNI CCWGG 1 cut(s) 1202
BstNSI RCATGY 2 cut(s) 61, 627
BstSCI CCNGG 5 cut(s) 358, 359, 957, 958, 1200
BstSFI CTRYAG 1 cut(s) 1136
BstSLI GKGCMC 1 cut(s) 593
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 4 cut(s) 367, 488, 1021, 1094
BstXI CCANNNNNNTGG 1 cut(s) 586
BsuRI GGCC 3 cut(s) 235, 364, 759
BtgI CCRYGG 1 cut(s) 1170
BtsCI GGATG 1 cut(s) 1094
BtsI GCAGTG 1 cut(s) 779
BtsIMutI CAGTG 3 cut(s) 170, 389, 779
BveI ACCTGC 1 cut(s) 670
Cac8I GCNNGC 5 cut(s) 237, 444, 550, 617, 1077
CfoI GCGC 1 cut(s) 455
Cfr13I GGNCC 3 cut(s) 362, 576, 758
Cfr9I CCCGGG 2 cut(s) 359, 958
Csp6I GTAC 2 cut(s) 427, 555
CviAII CATG 6 cut(s) 58, 103, 279, 624, 1004, 1171
CviQI GTAC 2 cut(s) 427, 555
DdeI CTNAG 4 cut(s) 29, 447, 572, 675
DpnI GATC 4 cut(s) 123, 488, 655, 1092
DpnII GATC 4 cut(s) 121, 486, 653, 1090
DraI TTTAAA 1 cut(s) 885
Eam1104I CTCTTC 2 cut(s) 210, 805
EarI CTCTTC 2 cut(s) 210, 805
Ecl136II GAGCTC 1 cut(s) 736
Eco130I CCWWGG 2 cut(s) 995, 1170
Eco24I GRGCYC 1 cut(s) 738
Eco47I GGWCC 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 736
Eco57I CTGAAG 3 cut(s) 249, 336, 1018
Eco88I CYCGRG 3 cut(s) 359, 543, 958
EcoICRI GAGCTC 1 cut(s) 736
EcoRII CCWGG 1 cut(s) 1200
EcoT14I CCWWGG 2 cut(s) 995, 1170
EcoT38I GRGCYC 1 cut(s) 738
ErhI CCWWGG 2 cut(s) 995, 1170
FaeI CATG 6 cut(s) 61, 106, 282, 627, 1007, 1174
FaqI GGGAC 1 cut(s) 733
FatI CATG 6 cut(s) 57, 102, 278, 623, 1003, 1170
FauI CCCGC 1 cut(s) 1194
FauNDI CATATG 1 cut(s) 559
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 5 cut(s) 356, 477, 1010, 1080, 1083
FokI GGATG 1 cut(s) 1081
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 5 cut(s) 356, 477, 1010, 1080, 1083
FspBI CTAG 4 cut(s) 549, 879, 899, 996
GlaI GCGC 1 cut(s) 454
GluI GCNGC 5 cut(s) 356, 477, 1010, 1080, 1083
HaeIII GGCC 3 cut(s) 235, 364, 759
HapII CCGG 3 cut(s) 182, 360, 959
HhaI GCGC 1 cut(s) 455
Hin1II CATG 6 cut(s) 61, 106, 282, 627, 1007, 1174
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HinfI GANTC 2 cut(s) 151, 371
HpaII CCGG 3 cut(s) 182, 360, 959
HphI GGTGA 4 cut(s) 86, 867, 936, 1159
Hpy166II GTNNAC 3 cut(s) 569, 600, 637
Hpy188I TCNGA 3 cut(s) 196, 491, 1037
Hpy188III TCNNGA 8 cut(s) 23, 119, 182, 314, 368, 543, 660, 809
Hpy8I GTNNAC 3 cut(s) 569, 600, 637
HpyAV CCTTC 4 cut(s) 321, 486, 657, 1237
HpyCH4III ACNGT 6 cut(s) 95, 384, 471, 724, 864, 1051
HpyCH4V TGCA 7 cut(s) 273, 632, 772, 784, 940, 965, 1138
HpyF10VI GCNNNNNNNGC 5 cut(s) 245, 361, 452, 756, 1009
HpyF3I CTNAG 4 cut(s) 29, 447, 572, 675
Hsp92II CATG 6 cut(s) 61, 106, 282, 627, 1007, 1174
HspAI GCGC 1 cut(s) 453
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 4 cut(s) 121, 486, 653, 1090
LmnI GCTCC 3 cut(s) 54, 121, 895
Lsp1109I GCAGC 4 cut(s) 367, 488, 1021, 1094
LweI GCATC 1 cut(s) 619
MaeI CTAG 4 cut(s) 549, 879, 899, 996
MaeIII GTNAC 4 cut(s) 704, 901, 942, 1045
MalI GATC 4 cut(s) 123, 488, 655, 1092
MboI GATC 4 cut(s) 121, 486, 653, 1090
MboII GAAGA 5 cut(s) 227, 329, 777, 792, 1156
MhlI GDGCHC 2 cut(s) 593, 738
MluCI AATT 5 cut(s) 48, 172, 464, 670, 1066
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 3 cut(s) 164, 603, 978
MroI TCCGGA 1 cut(s) 181
MseI TTAA 4 cut(s) 669, 884, 1029, 1220
MspA1I CMGCKG 4 cut(s) 973, 1085, 1112, 1189
MspCI CTTAAG 1 cut(s) 1219
MspI CCGG 3 cut(s) 182, 360, 959
MspR9I CCNGG 5 cut(s) 360, 361, 959, 960, 1202
Mva1269I GAATGC 3 cut(s) 326, 774, 1205
MvaI CCWGG 1 cut(s) 1202
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 5 cut(s) 245, 361, 452, 756, 1009
NciI CCSGG 4 cut(s) 360, 361, 959, 960
NcoI CCATGG 1 cut(s) 1170
NdeI CATATG 1 cut(s) 559
NdeII GATC 4 cut(s) 121, 486, 653, 1090
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 6 cut(s) 61, 106, 282, 627, 1007, 1174
NlaIV GGNNCC 4 cut(s) 441, 592, 820, 1025
NmuCI GTSAC 2 cut(s) 901, 942
NspI RCATGY 2 cut(s) 61, 627
PaeR7I CTCGAG 1 cut(s) 543
PciI ACATGT 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 658
PctI GAATGC 3 cut(s) 326, 774, 1205
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 5 cut(s) 357, 478, 1011, 1081, 1084
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PscI ACATGT 1 cut(s) 623
Psp124BI GAGCTC 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 1200
PspGI CCWGG 1 cut(s) 1200
PspN4I GGNNCC 4 cut(s) 441, 592, 820, 1025
PspPI GGNCC 3 cut(s) 362, 576, 758
PstI CTGCAG 1 cut(s) 1140
PvuII CAGCTG 2 cut(s) 1085, 1112
RsaI GTAC 2 cut(s) 428, 556
RsaNI GTAC 2 cut(s) 427, 555
SacI GAGCTC 1 cut(s) 738
SaqAI TTAA 4 cut(s) 669, 884, 1029, 1220
SatI GCNGC 5 cut(s) 356, 477, 1010, 1080, 1083
Sau3AI GATC 4 cut(s) 121, 486, 653, 1090
Sau96I GGNCC 3 cut(s) 362, 576, 758
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 5 cut(s) 360, 361, 959, 960, 1202
SduI GDGCHC 2 cut(s) 593, 738
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 1 cut(s) 1136
Sfr274I CTCGAG 1 cut(s) 543
SinI GGWCC 1 cut(s) 576
SlaI CTCGAG 1 cut(s) 543
SmaI CCCGGG 2 cut(s) 361, 960
SmlI CTYRAG 2 cut(s) 543, 1219
SmoI CTYRAG 2 cut(s) 543, 1219
SrfI GCCCGGGC 1 cut(s) 361
Sse9I AATT 5 cut(s) 48, 172, 464, 670, 1066
SsiI CCGC 7 cut(s) 324, 748, 822, 971, 1080, 1180, 1187
SspMI CTAG 4 cut(s) 549, 879, 899, 996
SstI GAGCTC 1 cut(s) 738
StyD4I CCNGG 5 cut(s) 358, 359, 957, 958, 1200
StyI CCWWGG 2 cut(s) 995, 1170
TaaI ACNGT 6 cut(s) 95, 384, 471, 724, 864, 1051
TaqI TCGA 7 cut(s) 62, 97, 131, 544, 652, 661, 1230
TaqII GACCGA 1 cut(s) 231
TasI AATT 5 cut(s) 48, 172, 464, 670, 1066
TatI WGTACW 2 cut(s) 426, 554
TauI GCSGC 1 cut(s) 1082
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 4 cut(s) 669, 884, 1029, 1220
Tru9I TTAA 4 cut(s) 669, 884, 1029, 1220
TscAI CASTG 3 cut(s) 170, 389, 779
TseFI GTSAC 2 cut(s) 901, 942
TseI GCWGC 4 cut(s) 355, 476, 1009, 1082
Tsp45I GTSAC 2 cut(s) 901, 942
TspDTI ATGAA 2 cut(s) 379, 873
TspGWI ACGGA 1 cut(s) 1048
TspMI CCCGGG 2 cut(s) 359, 958
TspRI CASTG 3 cut(s) 170, 389, 779
Vha464I CTTAAG 1 cut(s) 1219
VpaK11BI GGWCC 1 cut(s) 576
XapI RAATTY 2 cut(s) 172, 1066
XceI RCATGY 2 cut(s) 61, 627
XhoI CTCGAG 1 cut(s) 543
XmaI CCCGGG 2 cut(s) 359, 958
XmaJI CCTAGG 1 cut(s) 995
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 4 cut(s) 549, 879, 899, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.