pycom02g11500

Tubby-like F-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
8108059 .. 8109667
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11500.4

Sequence Viewer

Length: 1209 bp
ATGAAAGATGGAATTGGGAGCATGTCAAGGCGAGTTGGTGAGCGGAAGCTTTGGCGTAGAAGGACGTTGTCGCATATTGCTCCTGACATGGCTCCAACCCCTCCAACTGATGTGACTCAGCAGGGTCAGTGGGCGAACTTGCCTCCGGAATTGCTTTTGGACATAATTCAGAGGGTGGAAGAAAGTGAAACCTCGTGGCCTGCTCGAGCTGTCGTTGTTTTTTGTGGTTCAGTTTGTAAGTCATGGAGGGACATTACGAGGGAGATAGTCAAAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTGAAGCAGCCGGGGCCTCGCGAGTCTCCAATACAGTGCTTCATTAGAAGGAATAGAGAAACTTCCACATTTTATCTGTACTGTGGTCTGGCACCATCCGAGGGCGAGAAAGATAAATTACTGCTAGCAGCCAAAAGGATCAGAAGGGCAACAAGCACAGAGTTCGTTATATCTTTGGTTTCAGATGATTTTTCTCGATCCAGCAGTACATATGTTGGTAAATTGAGGTCCAACTTTCTGGGTACCAAGTTCACCGTATATGACAGCCAGCCTCCATGTGATGCGGTACCCAAACCAAATAATCGATCATCTCGAAGGTTCCATTCTAAGCAGGTATCTCCAAGAGTACCAGCGTGTAACTACAGCGTTGGCAACATCTCTTACGAGCTCAATATTTTTTGCACAAGAGGTCCAAGGAGAATGCATTGTGCTATGCACTCCATTCCTGTCTCGTCCATTCAGGAGGGGGGCACCGCCCCAACACCAACATCGTTGCCACAAGCCTATGACGAACAATTTGCTGTCTCACCAAGTTCAAAAGAAAAGGATCTGCTCACAGAGTTCAGCTCTACAACCCTCTCGGAGCCAAACATGTCTGCCCCGGGCGCAGAGCCACTGGTTTTGAAAAACAAGTCTCCTAGGTGGCATGAGCAGCTACAATGCTGGTGCCTTAACTTTAGAGGACGCGTTACAGTGGCTTCTGTGAAAAACTTCCAGCTTGTGGCAGCTGTTGATCCGTCCCACAACGTTTCGGCTGAAGAGCAAGAGAGGGTAATCCTACAGTTTGGAAAGATCGGAAAAGACATCTTCACCTTGGATTATCGCTACCCGCTGTCCTGTTTCCAAGCGTTTGCGATCTGCTTAAGCAGCTTCGACACCAAGCCAGCATGTGAATGA

Protein Analysis

403

Amino Acids

45.12

Weight (kDa)

9.1

Isoelectric Point (pI)

69.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010770)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 634
Acc65I GGTACC 2 cut(s) 554, 598
AccB1I GGYRCC 5 cut(s) 403, 554, 598, 782, 978
AccB7I CCANNNNNTGG 1 cut(s) 1033
AccBSI CCGCTC 1 cut(s) 43
AccII CGCG 2 cut(s) 333, 999
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 4 cut(s) 43, 596, 786, 1142
AclI AACGTT 1 cut(s) 1059
AclWI GGATC 4 cut(s) 458, 504, 867, 1040
AcuI CTGAAG 1 cut(s) 1089
AfaI GTAC 5 cut(s) 392, 520, 556, 600, 660
AfiI CCNNNNNNNGG 2 cut(s) 413, 1033
AflII CTTAAG 1 cut(s) 1174
AflIII ACRYGT 2 cut(s) 903, 997
AgsI TTSAA 3 cut(s) 316, 849, 937
AluBI AGCT 8 cut(s) 49, 209, 700, 879, 967, 1030, 1040, 1182
AluI AGCT 8 cut(s) 49, 209, 700, 879, 967, 1030, 1040, 1182
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 4 cut(s) 342, 766, 841, 951
AlwI GGATC 4 cut(s) 458, 504, 867, 1040
Ama87I CYCGRG 2 cut(s) 204, 913
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 2 cut(s) 197, 326
ApeKI GCWGC 5 cut(s) 319, 440, 964, 1037, 1179
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
Asp700I GAANNNNTTC 1 cut(s) 1022
Asp718I GGTACC 2 cut(s) 554, 598
AspA2I CCTAGG 1 cut(s) 950
AspLEI GCGC 1 cut(s) 920
AspS9I GGNCC 3 cut(s) 326, 540, 722
AsuC2I CCSGG 3 cut(s) 324, 914, 915
AsuHPI GGTGA 4 cut(s) 50, 556, 831, 1114
AsuNHI GCTAGC 1 cut(s) 436
AvaI CYCGRG 2 cut(s) 204, 913
AvaII GGWCC 2 cut(s) 540, 722
AvrII CCTAGG 1 cut(s) 950
BaeGI GKGCMC 1 cut(s) 785
BanI GGYRCC 5 cut(s) 403, 554, 598, 782, 978
BanII GRGCYC 1 cut(s) 702
BauI CACGAG 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 5 cut(s) 331, 452, 976, 1049, 1191
BccI CCATC 2 cut(s) 2, 415
BcgI CGANNNNNNTGC 4 cut(s) 457, 491, 812, 846
BcnI CCSGG 3 cut(s) 324, 914, 915
BcoDI GTCTC 4 cut(s) 342, 766, 841, 951
BfaI CTAG 2 cut(s) 437, 951
BfmI CTRYAG 2 cut(s) 673, 1091
BfrI CTTAAG 1 cut(s) 1174
BfuAI ACCTGC 1 cut(s) 634
BisI GCNGC 5 cut(s) 320, 441, 965, 1038, 1180
BlnI CCTAGG 1 cut(s) 950
BlsI GCNGC 5 cut(s) 321, 442, 966, 1039, 1181
Bme1390I CCNGG 3 cut(s) 324, 914, 915
Bme18I GGWCC 2 cut(s) 540, 722
BmeT110I CYCGRG 2 cut(s) 204, 913
BmgT120I GGNCC 3 cut(s) 326, 540, 722
BmiI GGNNCC 9 cut(s) 93, 327, 405, 556, 600, 632, 784, 897, 980
BmrFI CCNGG 3 cut(s) 324, 914, 915
BmsI GCATC 1 cut(s) 583
BmtI GCTAGC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 863, 895
Bpu10I CCTNAGC 1 cut(s) 279
BpuMI CCSGG 3 cut(s) 324, 914, 915
Bsa29I ATCGAT 1 cut(s) 616
BsaJI CCNNGG 7 cut(s) 323, 411, 725, 912, 913, 950, 1125
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 1033
Bse1I ACTGG 1 cut(s) 933
Bse3DI GCAATG 1 cut(s) 290
BseAI TCCGGA 1 cut(s) 145
BseCI ATCGAT 1 cut(s) 616
BseDI CCNNGG 7 cut(s) 323, 411, 725, 912, 913, 950, 1125
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 2 cut(s) 413, 1033
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 131, 270
BseNI ACTGG 1 cut(s) 933
BseSI GKGCMC 1 cut(s) 785
BseXI GCAGC 5 cut(s) 331, 452, 976, 1049, 1191
Bsh1236I CGCG 2 cut(s) 333, 999
BshFI GGCC 2 cut(s) 199, 328
BshNI GGYRCC 5 cut(s) 403, 554, 598, 782, 978
BshVI ATCGAT 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 2 cut(s) 204, 913
BsiSI CCGG 3 cut(s) 146, 323, 914
BslFI GGGAC 2 cut(s) 263, 1036
BslI CCNNNNNNNGG 2 cut(s) 413, 1033
BsmAI GTCTC 4 cut(s) 342, 766, 841, 951
BsmFI GGGAC 2 cut(s) 263, 1036
BsmI GAATGC 1 cut(s) 738
BsnI GGCC 2 cut(s) 199, 328
BsoBI CYCGRG 2 cut(s) 204, 913
Bsp1286I GDGCHC 2 cut(s) 702, 785
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 7 cut(s) 450, 509, 617, 859, 1045, 1104, 1167
Bsp68I TCGCGA 1 cut(s) 333
BspACI CCGC 4 cut(s) 43, 596, 786, 1142
BspANI GGCC 2 cut(s) 199, 328
BspCNI CTCAG 2 cut(s) 130, 271
BspDI ATCGAT 1 cut(s) 616
BspEI TCCGGA 1 cut(s) 145
BspFNI CGCG 2 cut(s) 333, 999
BspLI GGNNCC 9 cut(s) 93, 327, 405, 556, 600, 632, 784, 897, 980
BspMI ACCTGC 1 cut(s) 634
BspOI GCTAGC 1 cut(s) 440
BspPI GGATC 4 cut(s) 458, 504, 867, 1040
BspQI GCTCTTC 1 cut(s) 1065
BspT107I GGYRCC 5 cut(s) 403, 554, 598, 782, 978
BspTI CTTAAG 1 cut(s) 1174
BsrBI CCGCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 290
BsrI ACTGG 1 cut(s) 933
BssECI CCNNGG 7 cut(s) 323, 411, 725, 912, 913, 950, 1125
BssMI GATC 7 cut(s) 450, 509, 617, 859, 1045, 1104, 1167
BssSI CACGAG 1 cut(s) 193
BssT1I CCWWGG 3 cut(s) 725, 950, 1125
Bst2BI CACGAG 1 cut(s) 193
Bst4CI ACNGT 5 cut(s) 348, 395, 568, 1006, 1095
Bst6I CTCTTC 1 cut(s) 1065
BstAFI CTTAAG 1 cut(s) 1174
BstC8I GCNNGC 4 cut(s) 201, 438, 581, 1197
BstDEI CTNAG 3 cut(s) 117, 279, 639
BstF5I GGATG 1 cut(s) 407
BstFNI CGCG 2 cut(s) 333, 999
BstHHI GCGC 1 cut(s) 920
BstKTI GATC 7 cut(s) 453, 512, 620, 862, 1048, 1107, 1170
BstMAI GTCTC 4 cut(s) 342, 766, 841, 951
BstMBI GATC 7 cut(s) 450, 509, 617, 859, 1045, 1104, 1167
BstMWI GCNNNNNNNGC 4 cut(s) 325, 917, 964, 1179
BstNSI RCATGY 3 cut(s) 25, 907, 1203
BstSCI CCNGG 3 cut(s) 322, 912, 913
BstSFI CTRYAG 2 cut(s) 673, 1091
BstSLI GKGCMC 1 cut(s) 785
BstUI CGCG 2 cut(s) 333, 999
BstV1I GCAGC 5 cut(s) 331, 452, 976, 1049, 1191
BstX2I RGATCY 1 cut(s) 859
BstXI CCANNNNNNTGG 1 cut(s) 550
BstYI RGATCY 1 cut(s) 859
Bsu15I ATCGAT 1 cut(s) 616
BsuRI GGCC 2 cut(s) 199, 328
BsuTUI ATCGAT 1 cut(s) 616
BtsCI GGATG 1 cut(s) 407
BtsIMutI CAGTG 4 cut(s) 134, 353, 926, 1011
BtuMI TCGCGA 1 cut(s) 333
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 4 cut(s) 201, 438, 581, 1197
CfoI GCGC 1 cut(s) 920
Cfr13I GGNCC 3 cut(s) 326, 540, 722
Cfr9I CCCGGG 1 cut(s) 913
ClaI ATCGAT 1 cut(s) 616
CseI GACGC 1 cut(s) 1005
Csp6I GTAC 5 cut(s) 391, 519, 555, 599, 659
CspCI CAANNNNNGTGG 2 cut(s) 915, 950
CviAII CATG 7 cut(s) 22, 88, 243, 588, 904, 959, 1200
CviQI GTAC 5 cut(s) 391, 519, 555, 599, 659
DdeI CTNAG 3 cut(s) 117, 279, 639
DpnI GATC 7 cut(s) 452, 511, 619, 861, 1047, 1106, 1169
DpnII GATC 7 cut(s) 450, 509, 617, 859, 1045, 1104, 1167
Eam1104I CTCTTC 1 cut(s) 1065
EarI CTCTTC 1 cut(s) 1065
Ecl136II GAGCTC 1 cut(s) 700
Eco130I CCWWGG 3 cut(s) 725, 950, 1125
Eco24I GRGCYC 1 cut(s) 702
Eco47I GGWCC 2 cut(s) 540, 722
Eco53kI GAGCTC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 1089
Eco88I CYCGRG 2 cut(s) 204, 913
EcoICRI GAGCTC 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 326
EcoT14I CCWWGG 3 cut(s) 725, 950, 1125
EcoT22I ATGCAT 1 cut(s) 738
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 3 cut(s) 725, 950, 1125
FaeI CATG 7 cut(s) 25, 91, 246, 591, 907, 962, 1203
FaqI GGGAC 2 cut(s) 263, 1036
FatI CATG 7 cut(s) 21, 87, 242, 587, 903, 958, 1199
FauI CCCGC 1 cut(s) 1149
FauNDI CATATG 1 cut(s) 523
Fnu4HI GCNGC 5 cut(s) 320, 441, 965, 1038, 1180
FokI GGATG 1 cut(s) 394
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 5 cut(s) 320, 441, 965, 1038, 1180
FspBI CTAG 2 cut(s) 437, 951
GlaI GCGC 1 cut(s) 919
GluI GCNGC 5 cut(s) 320, 441, 965, 1038, 1180
HaeIII GGCC 2 cut(s) 199, 328
HapII CCGG 3 cut(s) 146, 323, 914
HgaI GACGC 1 cut(s) 1005
HhaI GCGC 1 cut(s) 920
Hin1II CATG 7 cut(s) 25, 91, 246, 591, 907, 962, 1203
Hin6I GCGC 1 cut(s) 918
HinP1I GCGC 1 cut(s) 918
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 115, 335
HpaII CCGG 3 cut(s) 146, 323, 914
HphI GGTGA 4 cut(s) 50, 556, 831, 1114
Hpy166II GTNNAC 1 cut(s) 564
Hpy188I TCNGA 6 cut(s) 171, 412, 455, 496, 895, 1109
Hpy188III TCNNGA 7 cut(s) 83, 146, 278, 332, 507, 624, 773
Hpy8I GTNNAC 1 cut(s) 564
HpyAV CCTTC 5 cut(s) 54, 285, 354, 450, 621
HpyCH4III ACNGT 5 cut(s) 348, 395, 568, 1006, 1095
HpyCH4IV ACGT 2 cut(s) 65, 1059
HpyCH4V TGCA 3 cut(s) 714, 736, 748
HpyF10VI GCNNNNNNNGC 4 cut(s) 325, 917, 964, 1179
HpyF3I CTNAG 3 cut(s) 117, 279, 639
HpySE526I ACGT 2 cut(s) 65, 1059
Hsp92II CATG 7 cut(s) 25, 91, 246, 591, 907, 962, 1203
HspAI GCGC 1 cut(s) 918
Kpn2I TCCGGA 1 cut(s) 145
KpnI GGTACC 2 cut(s) 558, 602
Kzo9I GATC 7 cut(s) 450, 509, 617, 859, 1045, 1104, 1167
LguI GCTCTTC 1 cut(s) 1065
LmnI GCTCC 4 cut(s) 18, 85, 97, 895
Lsp1109I GCAGC 5 cut(s) 331, 452, 976, 1049, 1191
LweI GCATC 1 cut(s) 583
MaeI CTAG 2 cut(s) 437, 951
MaeII ACGT 2 cut(s) 65, 1059
MaeIII GTNAC 3 cut(s) 112, 668, 1000
MalI GATC 7 cut(s) 452, 511, 619, 861, 1047, 1106, 1169
MbiI CCGCTC 1 cut(s) 43
MboI GATC 7 cut(s) 450, 509, 617, 859, 1045, 1104, 1167
MboII GAAGA 3 cut(s) 191, 1082, 1111
MflI RGATCY 1 cut(s) 859
MhlI GDGCHC 2 cut(s) 702, 785
MluCI AATT 6 cut(s) 12, 149, 165, 428, 533, 827
MluI ACGCGT 1 cut(s) 997
MlyI GAGTC 2 cut(s) 109, 344
MmeI TCCRAC 3 cut(s) 119, 128, 567
Mph1103I ATGCAT 1 cut(s) 738
MroI TCCGGA 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 1022
MseI TTAA 2 cut(s) 984, 1175
MslI CAYNNNNRTG 1 cut(s) 1204
MspA1I CMGCKG 2 cut(s) 1040, 1144
MspCI CTTAAG 1 cut(s) 1174
MspI CCGG 3 cut(s) 146, 323, 914
MspR9I CCNGG 3 cut(s) 324, 914, 915
Mva1269I GAATGC 1 cut(s) 738
MvnI CGCG 2 cut(s) 333, 999
MwoI GCNNNNNNNGC 4 cut(s) 325, 917, 964, 1179
NciI CCSGG 3 cut(s) 324, 914, 915
NdeI CATATG 1 cut(s) 523
NdeII GATC 7 cut(s) 450, 509, 617, 859, 1045, 1104, 1167
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 7 cut(s) 25, 91, 246, 591, 907, 962, 1203
NlaIV GGNNCC 9 cut(s) 93, 327, 405, 556, 600, 632, 784, 897, 980
NmuCI GTSAC 1 cut(s) 112
NruI TCGCGA 1 cut(s) 333
NsiI ATGCAT 1 cut(s) 738
NspI RCATGY 3 cut(s) 25, 907, 1203
PaeR7I CTCGAG 1 cut(s) 204
PciI ACATGT 1 cut(s) 903
PciSI GCTCTTC 1 cut(s) 1065
PcsI WCGNNNNNNNCGW 1 cut(s) 622
PctI GAATGC 1 cut(s) 738
PdmI GAANNNNTTC 1 cut(s) 1022
PflFI GACNNNGTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 1033
PkrI GCNGC 5 cut(s) 321, 442, 966, 1039, 1181
PleI GAGTC 2 cut(s) 109, 343
PpsI GAGTC 2 cut(s) 109, 343
PscI ACATGT 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 702
Psp1406I AACGTT 1 cut(s) 1059
PspN4I GGNNCC 9 cut(s) 93, 327, 405, 556, 600, 632, 784, 897, 980
PspPI GGNCC 3 cut(s) 326, 540, 722
PspXI VCTCGAGB 1 cut(s) 204
PsuI RGATCY 1 cut(s) 859
PsyI GACNNNGTC 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 1040
RruI TCGCGA 1 cut(s) 333
RsaI GTAC 5 cut(s) 392, 520, 556, 600, 660
RsaNI GTAC 5 cut(s) 391, 519, 555, 599, 659
RseI CAYNNNNRTG 1 cut(s) 1204
SacI GAGCTC 1 cut(s) 702
SapI GCTCTTC 1 cut(s) 1065
SaqAI TTAA 2 cut(s) 984, 1175
SatI GCNGC 5 cut(s) 320, 441, 965, 1038, 1180
Sau3AI GATC 7 cut(s) 450, 509, 617, 859, 1045, 1104, 1167
Sau96I GGNCC 3 cut(s) 326, 540, 722
SchI GAGTC 2 cut(s) 109, 344
ScrFI CCNGG 3 cut(s) 324, 914, 915
SduI GDGCHC 2 cut(s) 702, 785
SfaNI GCATC 1 cut(s) 583
SfcI CTRYAG 2 cut(s) 673, 1091
Sfr274I CTCGAG 1 cut(s) 204
SinI GGWCC 2 cut(s) 540, 722
SlaI CTCGAG 1 cut(s) 204
SmaI CCCGGG 1 cut(s) 915
SmiMI CAYNNNNRTG 1 cut(s) 1204
SmlI CTYRAG 2 cut(s) 204, 1174
SmoI CTYRAG 2 cut(s) 204, 1174
Sse9I AATT 6 cut(s) 12, 149, 165, 428, 533, 827
SsiI CCGC 4 cut(s) 43, 596, 786, 1142
SspI AATATT 1 cut(s) 706
SspMI CTAG 2 cut(s) 437, 951
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 3 cut(s) 322, 912, 913
StyI CCWWGG 3 cut(s) 725, 950, 1125
TaaI ACNGT 5 cut(s) 348, 395, 568, 1006, 1095
TaiI ACGT 2 cut(s) 68, 1062
TaqI TCGA 5 cut(s) 205, 508, 616, 625, 1185
TasI AATT 6 cut(s) 12, 149, 165, 428, 533, 827
TatI WGTACW 2 cut(s) 390, 518
Tru1I TTAA 2 cut(s) 984, 1175
Tru9I TTAA 2 cut(s) 984, 1175
TscAI CASTG 4 cut(s) 134, 353, 933, 1011
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 5 cut(s) 319, 440, 964, 1037, 1179
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 17, 343
TspGWI ACGGA 1 cut(s) 1038
TspMI CCCGGG 1 cut(s) 913
TspRI CASTG 4 cut(s) 134, 353, 933, 1011
Tth111I GACNNNGTC 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 1033
Vha464I CTTAAG 1 cut(s) 1174
VpaK11BI GGWCC 2 cut(s) 540, 722
XceI RCATGY 3 cut(s) 25, 907, 1203
XhoI CTCGAG 1 cut(s) 204
XmaI CCCGGG 1 cut(s) 913
XmaJI CCTAGG 1 cut(s) 950
XmnI GAANNNNTTC 1 cut(s) 1022
XspI CTAG 2 cut(s) 437, 951
Zsp2I ATGCAT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.