Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010770

Physical Location & Seq

Genomic Coordinates Reverse (-)

8501521 .. 8502492

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTGCAGCAGTACTTGTCTAGCAACAGCACTACTACTGGTTCAGAAGACAAGTACTCTGAAGCGATTTTGCATGAAACAACAGCCATTGTCTGCAATAGAGAACTACTTGTGGACTGGGAAGCAGATGGTGGTATTGCTGATATTGATAACAGCTTCATGGATCAGCAGCTTTGTACAACCTTTGCTTGTGACATTTACAACCACTTGCGAGCATCCGAGGTCAAGAAAAGGCCTTCCACTGATTATATGGACAAAATTCAGAAAGACATTAATCCAAGCATGCGTGCATTACTAGTCGATTGGCTTGTGGAGGTAGCCGAAGGCTACAGCTTTGTACCTGAGACATTGTATTTGGCTGTGAACTACATAGATCGATATCTTTCGGGGATTCCTATCAATAGAGAACGGTTAAAGTTACTTGGTGTTGCCTGCTTGATGCTTGCATCAAAATATGAATTTATGTGTACACCCTCGGTTGAAAAGTTCTGTGACCTTACTAATAACATTTATTTGGTGGAAGAGGTCTTGGAAATGGAATCTTCTGTGTTGAGTTACTTGAAGTACGAAATGACAGCCGTAACAACTAAATGTTTCTTAAGCCGATTTGTTCGAGTTGCTCAAGGGGCCAATGAGCTTCCATCATTGCATTTGGAGTGCTTAGCGAACTACCTTGCAGAACTATCTCTTCTCGATTACAGCATGCTTTGTTATGCCTCATCACTTATAGCTGCTTGTGCAATTTTCCTGGCCAATTACATAATGCTACCTTCAAAGAGGCCATGGAATTCTACCTTGCAGCATTACACTCTTTACCAGCCTTCGGATTTGTGCAACTGCGTCAAGGATCTCCATCGCCTATATTGCAATAACCAGAGTTCTAGTTTACCTGCCATCAGAGAGAAATATAGTCAACATGAGTACAAGTGTGTTGCCGAGAAGCAGTGCCCAGCAACAATCCCTGCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

323

Amino Acids

36.77

Weight (kDa)

4.98

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	65 - 192	3.6e-42	Cyclin, N-terminal domain
Cyclin_C	PF02984	194 - 316	1.3e-33	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18280 AT2G18280
fragaria_vesca	FvH4_1g13070
malus_domestica	MD02G1145300.v1.1 MD14G1114200.v1.1 MD15G1259500.v1.1
prunus_persica	Prupe.7G156400_v2.0.a1
pyrus_communis	pycom02g11500 pycom15g22700
rosa_chinensis	RchiOBHm_Chr2g0101241
rosa_laevigata	RLG00000017064
rosa_multiflora	Rmu_sc0006314.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141470
rosa_rugosa	Rorug02G0099900 Rorug02G0100000
rosa_samantha	Rh2AG145400 Rh2BG150800 Rh2CG151200 Rh2DG150900
rosa_wichuraiana	Rw2G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	898
AclWI	GGATC	2 cut(s)	171, 855
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	3 cut(s)	258, 458, 787
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	7 cut(s)	14, 56, 178, 339, 469, 566, 923
AfiI	CCNNNNNNNGG	1 cut(s)	823
AflII	CTTAAG	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	482, 562, 774
AhlI	ACTAGT	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	747
AluBI	AGCT	5 cut(s)	156, 172, 333, 637, 731
AluI	AGCT	5 cut(s)	156, 172, 333, 637, 731
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	171, 855
AoxI	GGCC	4 cut(s)	233, 627, 750, 779
ApeKI	GCWGC	4 cut(s)	7, 169, 731, 799
ApoI	RAATTY	3 cut(s)	258, 458, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
AseI	ATTAAT	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	627
BaeGI	GKGCMC	1 cut(s)	950
BalI	TGGCCA	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	4 cut(s)	19, 181, 718, 811
BccI	CCATC	4 cut(s)	122, 649, 861, 902
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	749
BcoDI	GTCTC	1 cut(s)	338
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	3 cut(s)	21, 296, 882
BfmI	CTRYAG	2 cut(s)	328, 963
BfrI	CTTAAG	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	898
BisI	GCNGC	4 cut(s)	8, 170, 732, 800
BlpI	GCTNAGC	1 cut(s)	661
BlsI	GCNGC	4 cut(s)	9, 171, 733, 801
BmcAI	AGTACT	2 cut(s)	14, 56
Bme1390I	CCNGG	1 cut(s)	749
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	749
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	3 cut(s)	224, 429, 455
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	661
BpuEI	CTTGAG	1 cut(s)	606
Bsa29I	ATCGAT	1 cut(s)	376
BsaBI	GATNNNNATC	3 cut(s)	378, 395, 852
BsaJI	CCNNGG	3 cut(s)	219, 474, 782
Bsc4I	CCNNNNNNNGG	1 cut(s)	823
Bse1I	ACTGG	2 cut(s)	43, 122
Bse3DI	GCAATG	1 cut(s)	644
Bse8I	GATNNNNATC	3 cut(s)	378, 395, 852
BseBI	CCWGG	1 cut(s)	749
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	219, 474, 782
BseGI	GGATG	1 cut(s)	215
BseJI	GATNNNNATC	3 cut(s)	378, 395, 852
BseLI	CCNNNNNNNGG	1 cut(s)	823
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	43, 122
BseSI	GKGCMC	1 cut(s)	950
BseXI	GCAGC	4 cut(s)	19, 181, 718, 811
BseYI	CCCAGC	1 cut(s)	949
BshFI	GGCC	4 cut(s)	235, 629, 752, 781
BshVI	ATCGAT	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	823
BsmAI	GTCTC	1 cut(s)	338
BsnI	GGCC	4 cut(s)	235, 629, 752, 781
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp1407I	TGTACA	2 cut(s)	176, 467
Bsp143I	GATC	3 cut(s)	163, 373, 847
Bsp1720I	GCTNAGC	1 cut(s)	661
Bsp19I	CCATGG	1 cut(s)	782
BspANI	GGCC	4 cut(s)	235, 629, 752, 781
BspCNI	CTCAG	1 cut(s)	334
BspDI	ATCGAT	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	628
BspMAI	CTGCAG	1 cut(s)	967
BspMI	ACCTGC	1 cut(s)	898
BspPI	GGATC	2 cut(s)	171, 855
BspTI	CTTAAG	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	644
BsrGI	TGTACA	2 cut(s)	176, 467
BsrI	ACTGG	2 cut(s)	43, 122
BssECI	CCNNGG	3 cut(s)	219, 474, 782
BssMI	GATC	3 cut(s)	163, 373, 847
BssT1I	CCWWGG	1 cut(s)	782
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	1 cut(s)	411
Bst6I	CTCTTC	2 cut(s)	516, 693
BstAFI	CTTAAG	1 cut(s)	598
BstAUI	TGTACA	2 cut(s)	176, 467
BstC8I	GCNNGC	6 cut(s)	213, 284, 288, 433, 444, 704
BstDEI	CTNAG	2 cut(s)	342, 661
BstDSI	CCRYGG	1 cut(s)	782
BstF5I	GGATG	1 cut(s)	215
BstKTI	GATC	3 cut(s)	166, 376, 850
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	3 cut(s)	163, 373, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	626, 737, 864
BstNI	CCWGG	1 cut(s)	749
BstNSI	RCATGY	2 cut(s)	286, 706
BstSCI	CCNGG	1 cut(s)	747
BstSFI	CTRYAG	2 cut(s)	328, 963
BstSLI	GKGCMC	1 cut(s)	950
BstV1I	GCAGC	4 cut(s)	19, 181, 718, 811
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
Bsu15I	ATCGAT	1 cut(s)	376
BsuRI	GGCC	4 cut(s)	235, 629, 752, 781
BsuTUI	ATCGAT	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	782
BtgZI	GCGATG	1 cut(s)	839
BtsCI	GGATG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	950
BtsIMutI	CAGTG	2 cut(s)	240, 950
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	6 cut(s)	213, 284, 288, 433, 444, 704
Cfr13I	GGNCC	1 cut(s)	627
ClaI	ATCGAT	1 cut(s)	376
CseI	GACGC	1 cut(s)	829
Csp6I	GTAC	7 cut(s)	13, 55, 177, 338, 468, 565, 922
CviAII	CATG	6 cut(s)	74, 160, 283, 703, 783, 917
CviQI	GTAC	7 cut(s)	13, 55, 177, 338, 468, 565, 922
DdeI	CTNAG	2 cut(s)	342, 661
DpnI	GATC	3 cut(s)	165, 375, 849
DpnII	GATC	3 cut(s)	163, 373, 847
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	2 cut(s)	516, 693
EarI	CTCTTC	2 cut(s)	516, 693
Eco130I	CCWWGG	1 cut(s)	782
Eco147I	AGGCCT	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	787
EcoRII	CCWGG	1 cut(s)	747
EcoRV	GATATC	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	782
ErhI	CCWWGG	1 cut(s)	782
FaeI	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
FatI	CATG	6 cut(s)	73, 159, 282, 702, 782, 916
Fnu4HI	GCNGC	4 cut(s)	8, 170, 732, 800
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	4 cut(s)	8, 170, 732, 800
FspBI	CTAG	3 cut(s)	21, 296, 882
GluI	GCNGC	4 cut(s)	8, 170, 732, 800
GsaI	CCCAGC	1 cut(s)	953
HaeIII	GGCC	4 cut(s)	235, 629, 752, 781
HgaI	GACGC	1 cut(s)	829
Hin1II	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
HincII	GTYRAC	1 cut(s)	914
HindII	GTYRAC	1 cut(s)	914
HinfI	GANTC	2 cut(s)	391, 539
Hpy166II	GTNNAC	6 cut(s)	115, 364, 468, 470, 887, 914
Hpy188I	TCNGA	6 cut(s)	46, 61, 220, 264, 826, 899
Hpy188III	TCNNGA	2 cut(s)	226, 692
Hpy8I	GTNNAC	6 cut(s)	115, 364, 468, 470, 887, 914
HpyAV	CCTTC	4 cut(s)	246, 317, 780, 831
HpyCH4III	ACNGT	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	626, 737, 864
HpyF3I	CTNAG	2 cut(s)	342, 661
Hsp92II	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
Kzo9I	GATC	3 cut(s)	163, 373, 847
Lsp1109I	GCAGC	4 cut(s)	19, 181, 718, 811
LweI	GCATC	3 cut(s)	224, 429, 455
MaeI	CTAG	3 cut(s)	21, 296, 882
MaeIII	GTNAC	5 cut(s)	191, 417, 491, 554, 580
MalI	GATC	3 cut(s)	165, 375, 849
MboI	GATC	3 cut(s)	163, 373, 847
MboII	GAAGA	4 cut(s)	59, 533, 534, 680
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	1 cut(s)	950
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	5 cut(s)	258, 458, 741, 754, 787
MluNI	TGGCCA	1 cut(s)	752
MnlI	CCTC	6 cut(s)	214, 307, 484, 517, 727, 771
Mox20I	TGGCCA	1 cut(s)	752
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	3 cut(s)	273, 413, 599
Msp20I	TGGCCA	1 cut(s)	752
MspCI	CTTAAG	1 cut(s)	598
MspR9I	CCNGG	1 cut(s)	749
MvaI	CCWGG	1 cut(s)	749
MwoI	GCNNNNNNNGC	3 cut(s)	626, 737, 864
NcoI	CCATGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	163, 373, 847
NlaIII	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
NlaIV	GGNNCC	1 cut(s)	628
NmeAIII	GCCGAG	1 cut(s)	961
NmuCI	GTSAC	2 cut(s)	191, 491
NspI	RCATGY	2 cut(s)	286, 706
PaeI	GCATGC	2 cut(s)	286, 706
PceI	AGGCCT	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	391, 539
PkrI	GCNGC	4 cut(s)	9, 171, 733, 801
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	747
PspFI	CCCAGC	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	1 cut(s)	627
PstI	CTGCAG	1 cut(s)	967
PsuI	RGATCY	1 cut(s)	847
RsaI	GTAC	7 cut(s)	14, 56, 178, 339, 469, 566, 923
RsaNI	GTAC	7 cut(s)	13, 55, 177, 338, 468, 565, 922
SaqAI	TTAA	3 cut(s)	273, 413, 599
SatI	GCNGC	4 cut(s)	8, 170, 732, 800
Sau3AI	GATC	3 cut(s)	163, 373, 847
Sau96I	GGNCC	1 cut(s)	627
ScaI	AGTACT	2 cut(s)	14, 56
ScrFI	CCNGG	1 cut(s)	749
SduI	GDGCHC	1 cut(s)	950
SfaNI	GCATC	3 cut(s)	224, 429, 455
SfcI	CTRYAG	2 cut(s)	328, 963
SmlI	CTYRAG	2 cut(s)	598, 621
SmoI	CTYRAG	2 cut(s)	598, 621
SpeI	ACTAGT	1 cut(s)	295
SphI	GCATGC	2 cut(s)	286, 706
Sse9I	AATT	5 cut(s)	258, 458, 741, 754, 787
SseBI	AGGCCT	1 cut(s)	235
SspMI	CTAG	3 cut(s)	21, 296, 882
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	747
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	1 cut(s)	411
TaqI	TCGA	4 cut(s)	300, 376, 613, 693
TasI	AATT	5 cut(s)	258, 458, 741, 754, 787
TatI	WGTACW	5 cut(s)	12, 54, 176, 467, 921
TfiI	GAWTC	2 cut(s)	391, 539
Tru1I	TTAA	3 cut(s)	273, 413, 599
Tru9I	TTAA	3 cut(s)	273, 413, 599
TscAI	CASTG	2 cut(s)	247, 950
TseFI	GTSAC	2 cut(s)	191, 491
TseI	GCWGC	4 cut(s)	7, 169, 731, 799
Tsp45I	GTSAC	2 cut(s)	191, 491
TspDTI	ATGAA	3 cut(s)	90, 148, 471
TspRI	CASTG	2 cut(s)	247, 950
Vha464I	CTTAAG	1 cut(s)	598
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	3 cut(s)	258, 458, 787
XceI	RCATGY	2 cut(s)	286, 706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	3 cut(s)	21, 296, 882
ZrmI	AGTACT	2 cut(s)	14, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.