ATPase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18330 AT4G36580 |
| fragaria_vesca | FvH4_1g13120 FvH4_1g13120 FvH4_1g13120 |
| malus_domestica | MD02G1145900.v1.1 MD15G1260100.v1.1 |
| prunus_persica | Prupe.7G156000_v2.0.a1 Prupe.7G156000_v2.0.a1 |
| pyrus_communis | pycom02g11540 pycom02g11550 pycom15g22750 |
| rosa_chinensis | RchiOBHm_Chr2g0101291 |
| rosa_laevigata | RLG00000017067 |
| rosa_multiflora | Rmu_co8334191.1_g000001 Rmu_sc0006128.1_g000022 |
| rosa_roxburghii | Rroxscaffold_2G00141430 |
| rosa_rugosa | Rorug02G0099300 |
| rosa_samantha | Rh2AG145800 Rh2BG151200 Rh2CG151700 Rh2DG151300 |
| rosa_wichuraiana | Rw2G011380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1848 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1505 |
| Acc65I | GGTACC | 1 cut(s) | 1184 |
| AccB1I | GGYRCC | 1 cut(s) | 1184 |
| AccBSI | CCGCTC | 1 cut(s) | 632 |
| AccII | CGCG | 7 cut(s) | 26, 75, 91, 612, 657, 1424, 1453 |
| AclWI | GGATC | 5 cut(s) | 212, 214, 414, 1288, 1526 |
| AcoI | YGGCCR | 2 cut(s) | 474, 1894 |
| AcsI | RAATTY | 3 cut(s) | 163, 415, 930 |
| AcuI | CTGAAG | 2 cut(s) | 699, 1908 |
| AfaI | GTAC | 2 cut(s) | 1186, 1595 |
| AfeI | AGCGCT | 1 cut(s) | 1414 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 986, 1187, 1471, 1547 |
| AflIII | ACRYGT | 1 cut(s) | 1422 |
| AgeI | ACCGGT | 1 cut(s) | 1439 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 789 |
| AjnI | CCWGG | 6 cut(s) | 476, 911, 1180, 1470, 1486, 1546 |
| Alw21I | GWGCWC | 2 cut(s) | 691, 1279 |
| Alw26I | GTCTC | 5 cut(s) | 170, 505, 608, 1002, 1686 |
| Alw44I | GTGCAC | 1 cut(s) | 1275 |
| AlwI | GGATC | 5 cut(s) | 212, 214, 414, 1288, 1526 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1043, 1511 |
| Ama87I | CYCGRG | 1 cut(s) | 891 |
| Aor51HI | AGCGCT | 1 cut(s) | 1414 |
| AoxI | GGCC | 6 cut(s) | 432, 474, 682, 970, 1175, 1894 |
| ApaLI | GTGCAC | 1 cut(s) | 1275 |
| ApoI | RAATTY | 3 cut(s) | 163, 415, 930 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1121, 1153 |
| AsiGI | ACCGGT | 1 cut(s) | 1439 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 360, 594, 651 |
| Asp718I | GGTACC | 1 cut(s) | 1184 |
| AspLEI | GCGC | 5 cut(s) | 77, 448, 612, 1410, 1415 |
| AspS9I | GGNCC | 4 cut(s) | 433, 813, 970, 1175 |
| AsuHPI | GGTGA | 7 cut(s) | 111, 761, 1454, 1562, 1616, 1631, 1856 |
| AsuII | TTCGAA | 2 cut(s) | 161, 1435 |
| AsuNHI | GCTAGC | 1 cut(s) | 368 |
| AvaI | CYCGRG | 1 cut(s) | 891 |
| AvaII | GGWCC | 1 cut(s) | 813 |
| BaeGI | GKGCMC | 1 cut(s) | 1279 |
| BalI | TGGCCA | 2 cut(s) | 476, 1896 |
| BanI | GGYRCC | 1 cut(s) | 1184 |
| BanII | GRGCYC | 1 cut(s) | 691 |
| BbsI | GAAGAC | 3 cut(s) | 147, 320, 1100 |
| Bbv12I | GWGCWC | 2 cut(s) | 691, 1279 |
| BbvCI | CCTCAGC | 1 cut(s) | 672 |
| BccI | CCATC | 2 cut(s) | 952, 1089 |
| BceAI | ACGGC | 2 cut(s) | 530, 879 |
| BciT130I | CCWGG | 6 cut(s) | 478, 913, 1182, 1472, 1488, 1548 |
| BclI | TGATCA | 2 cut(s) | 951, 1444 |
| BcoDI | GTCTC | 5 cut(s) | 170, 505, 608, 1002, 1686 |
| BfaI | CTAG | 4 cut(s) | 12, 369, 734, 903 |
| BfmI | CTRYAG | 2 cut(s) | 1026, 1044 |
| BfoI | RGCGCY | 1 cut(s) | 1416 |
| BglII | AGATCT | 1 cut(s) | 1492 |
| BlpI | GCTNAGC | 2 cut(s) | 1404, 1761 |
| Bme1390I | CCNGG | 6 cut(s) | 478, 913, 1182, 1472, 1488, 1548 |
| Bme18I | GGWCC | 1 cut(s) | 813 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 789 |
| BmeT110I | CYCGRG | 1 cut(s) | 891 |
| BmgT120I | GGNCC | 4 cut(s) | 433, 813, 970, 1175 |
| BmiI | GGNNCC | 1 cut(s) | 1186 |
| BmrFI | CCNGG | 6 cut(s) | 478, 913, 1182, 1472, 1488, 1548 |
| BmsI | GCATC | 4 cut(s) | 528, 557, 1049, 1351 |
| BmtI | GCTAGC | 1 cut(s) | 372 |
| BpiI | GAAGAC | 3 cut(s) | 147, 320, 1100 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1387, 1419, 1613, 1645 |
| BpmI | CTGGAG | 2 cut(s) | 1164, 1509 |
| Bpu10I | CCTNAGC | 1 cut(s) | 672 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1404, 1761 |
| Bpu14I | TTCGAA | 2 cut(s) | 161, 1435 |
| BpuEI | CTTGAG | 2 cut(s) | 659, 1559 |
| Bsa29I | ATCGAT | 1 cut(s) | 1350 |
| BsaI | GGTCTC | 1 cut(s) | 1686 |
| BsaJI | CCNNGG | 6 cut(s) | 24, 582, 912, 966, 980, 1546 |
| BsaWI | WCCGGW | 2 cut(s) | 1187, 1439 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1245, 1275 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 986, 1187, 1471, 1547 |
| Bse118I | RCCGGY | 2 cut(s) | 1439, 1772 |
| BseBI | CCWGG | 6 cut(s) | 478, 913, 1182, 1472, 1488, 1548 |
| BseCI | ATCGAT | 1 cut(s) | 1350 |
| BseDI | CCNNGG | 6 cut(s) | 24, 582, 912, 966, 980, 1546 |
| BseGI | GGATG | 1 cut(s) | 472 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 986, 1187, 1471, 1547 |
| BseMII | CTCAG | 9 cut(s) | 213, 330, 521, 609, 663, 699, 1005, 1013, 1418 |
| BseRI | GAGGAG | 7 cut(s) | 261, 725, 819, 870, 1257, 1269, 1562 |
| BseSI | GKGCMC | 1 cut(s) | 1279 |
| BseYI | CCCAGC | 1 cut(s) | 875 |
| BsgI | GTGCAG | 2 cut(s) | 443, 1524 |
| Bsh1236I | CGCG | 7 cut(s) | 26, 75, 91, 612, 657, 1424, 1453 |
| BshFI | GGCC | 6 cut(s) | 434, 476, 684, 972, 1177, 1896 |
| BshNI | GGYRCC | 1 cut(s) | 1184 |
| BshTI | ACCGGT | 1 cut(s) | 1439 |
| BshVI | ATCGAT | 1 cut(s) | 1350 |
| BsiHKAI | GWGCWC | 2 cut(s) | 691, 1279 |
| BsiHKCI | CYCGRG | 1 cut(s) | 891 |
| BsiSI | CCGG | 4 cut(s) | 125, 1188, 1440, 1773 |
| BslFI | GGGAC | 1 cut(s) | 1469 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 986, 1187, 1471, 1547 |
| BsmAI | GTCTC | 5 cut(s) | 170, 505, 608, 1002, 1686 |
| BsmBI | CGTCTC | 1 cut(s) | 505 |
| BsmFI | GGGAC | 1 cut(s) | 1469 |
| BsmI | GAATGC | 2 cut(s) | 492, 732 |
| BsnI | GGCC | 6 cut(s) | 434, 476, 684, 972, 1177, 1896 |
| Bso31I | GGTCTC | 1 cut(s) | 1686 |
| BsoBI | CYCGRG | 1 cut(s) | 891 |
| Bsp119I | TTCGAA | 2 cut(s) | 161, 1435 |
| Bsp1286I | GDGCHC | 2 cut(s) | 691, 1279 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1404, 1761 |
| Bsp19I | CCATGG | 2 cut(s) | 966, 980 |
| Bsp68I | TCGCGA | 1 cut(s) | 91 |
| BspANI | GGCC | 6 cut(s) | 434, 476, 684, 972, 1177, 1896 |
| BspCNI | CTCAG | 9 cut(s) | 214, 331, 520, 610, 664, 700, 1004, 1012, 1417 |
| BspDI | ATCGAT | 1 cut(s) | 1350 |
| BspFNI | CGCG | 7 cut(s) | 26, 75, 91, 612, 657, 1424, 1453 |
| BspHI | TCATGA | 1 cut(s) | 691 |
| BspLI | GGNNCC | 1 cut(s) | 1186 |
| BspMAI | CTGCAG | 2 cut(s) | 1030, 1048 |
| BspOI | GCTAGC | 1 cut(s) | 372 |
| BspPI | GGATC | 5 cut(s) | 212, 214, 414, 1288, 1526 |
| BspQI | GCTCTTC | 1 cut(s) | 255 |
| BspT104I | TTCGAA | 2 cut(s) | 161, 1435 |
| BspT107I | GGYRCC | 1 cut(s) | 1184 |
| BspTNI | GGTCTC | 1 cut(s) | 1686 |
| BsrBI | CCGCTC | 1 cut(s) | 632 |
| BsrFI | RCCGGY | 2 cut(s) | 1439, 1772 |
| BssAI | RCCGGY | 2 cut(s) | 1439, 1772 |
| BssECI | CCNNGG | 6 cut(s) | 24, 582, 912, 966, 980, 1546 |
| BssT1I | CCWWGG | 2 cut(s) | 966, 980 |
| Bst2UI | CCWGG | 6 cut(s) | 478, 913, 1182, 1472, 1488, 1548 |
| Bst4CI | ACNGT | 2 cut(s) | 850, 1502 |
| Bst6I | CTCTTC | 3 cut(s) | 118, 255, 476 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 578, 1043 |
| BstBI | TTCGAA | 2 cut(s) | 161, 1435 |
| BstC8I | GCNNGC | 3 cut(s) | 370, 768, 988 |
| BstDSI | CCRYGG | 4 cut(s) | 24, 582, 966, 980 |
| BstEII | GGTNACC | 1 cut(s) | 907 |
| BstF5I | GGATG | 1 cut(s) | 472 |
| BstFNI | CGCG | 7 cut(s) | 26, 75, 91, 612, 657, 1424, 1453 |
| BstH2I | RGCGCY | 1 cut(s) | 1416 |
| BstHHI | GCGC | 5 cut(s) | 77, 448, 612, 1410, 1415 |
| BstMAI | GTCTC | 5 cut(s) | 170, 505, 608, 1002, 1686 |
| BstNI | CCWGG | 6 cut(s) | 478, 913, 1182, 1472, 1488, 1548 |
| BstPI | GGTNACC | 1 cut(s) | 907 |
| BstSCI | CCNGG | 6 cut(s) | 476, 911, 1180, 1470, 1486, 1546 |
| BstSFI | CTRYAG | 2 cut(s) | 1026, 1044 |
| BstSLI | GKGCMC | 1 cut(s) | 1279 |
| BstUI | CGCG | 7 cut(s) | 26, 75, 91, 612, 657, 1424, 1453 |
| BstV2I | GAAGAC | 3 cut(s) | 147, 320, 1100 |
| BstX2I | RGATCY | 3 cut(s) | 206, 1293, 1492 |
| BstYI | RGATCY | 3 cut(s) | 206, 1293, 1492 |
| Bsu15I | ATCGAT | 1 cut(s) | 1350 |
| BsuRI | GGCC | 6 cut(s) | 434, 476, 684, 972, 1177, 1896 |
| BsuTUI | ATCGAT | 1 cut(s) | 1350 |
| BtgI | CCRYGG | 4 cut(s) | 24, 582, 966, 980 |
| BtsCI | GGATG | 1 cut(s) | 472 |
| BtsIMutI | CAGTG | 5 cut(s) | 705, 947, 999, 1507, 1509 |
| BtuMI | TCGCGA | 1 cut(s) | 91 |
| Cac8I | GCNNGC | 3 cut(s) | 370, 768, 988 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1043, 1511 |
| CciI | TCATGA | 1 cut(s) | 691 |
| CfoI | GCGC | 5 cut(s) | 77, 448, 612, 1410, 1415 |
| Cfr10I | RCCGGY | 2 cut(s) | 1439, 1772 |
| Cfr13I | GGNCC | 4 cut(s) | 433, 813, 970, 1175 |
| Cfr42I | CCGCGG | 1 cut(s) | 27 |
| ClaI | ATCGAT | 1 cut(s) | 1350 |
| CseI | GACGC | 1 cut(s) | 1097 |
| Csp6I | GTAC | 2 cut(s) | 1185, 1594 |
| CspAI | ACCGGT | 1 cut(s) | 1439 |
| CviAII | CATG | 6 cut(s) | 692, 967, 981, 1162, 1298, 1393 |
| CviQI | GTAC | 2 cut(s) | 1185, 1594 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1505 |
| DriI | GACNNNNNGTC | 1 cut(s) | 789 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1505 |
| EaeI | YGGCCR | 2 cut(s) | 474, 1894 |
| Eam1104I | CTCTTC | 3 cut(s) | 118, 255, 476 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 789 |
| EarI | CTCTTC | 3 cut(s) | 118, 255, 476 |
| Ecl136II | GAGCTC | 1 cut(s) | 689 |
| Eco130I | CCWWGG | 2 cut(s) | 966, 980 |
| Eco24I | GRGCYC | 1 cut(s) | 691 |
| Eco31I | GGTCTC | 1 cut(s) | 1686 |
| Eco47I | GGWCC | 1 cut(s) | 813 |
| Eco47III | AGCGCT | 1 cut(s) | 1414 |
| Eco53kI | GAGCTC | 1 cut(s) | 689 |
| Eco57I | CTGAAG | 2 cut(s) | 699, 1908 |
| Eco88I | CYCGRG | 1 cut(s) | 891 |
| Eco91I | GGTNACC | 1 cut(s) | 907 |
| EcoICRI | GAGCTC | 1 cut(s) | 689 |
| EcoO109I | RGGNCCY | 1 cut(s) | 813 |
| EcoO65I | GGTNACC | 1 cut(s) | 907 |
| EcoRI | GAATTC | 2 cut(s) | 163, 930 |
| EcoRII | CCWGG | 6 cut(s) | 476, 911, 1180, 1470, 1486, 1546 |
| EcoT14I | CCWWGG | 2 cut(s) | 966, 980 |
| EcoT38I | GRGCYC | 1 cut(s) | 691 |
| ErhI | CCWWGG | 2 cut(s) | 966, 980 |
| Esp3I | CGTCTC | 1 cut(s) | 505 |
| FaeI | CATG | 6 cut(s) | 695, 970, 984, 1165, 1301, 1396 |
| FaqI | GGGAC | 1 cut(s) | 1469 |
| FatI | CATG | 6 cut(s) | 691, 966, 980, 1161, 1297, 1392 |
| FauI | CCCGC | 1 cut(s) | 1446 |
| FbaI | TGATCA | 2 cut(s) | 951, 1444 |
| FokI | GGATG | 1 cut(s) | 479 |
| FriOI | GRGCYC | 1 cut(s) | 691 |
| FspBI | CTAG | 4 cut(s) | 12, 369, 734, 903 |
| GlaI | GCGC | 5 cut(s) | 76, 447, 611, 1409, 1414 |
| GsaI | CCCAGC | 1 cut(s) | 879 |
| GsuI | CTGGAG | 2 cut(s) | 1164, 1509 |
| HaeII | RGCGCY | 1 cut(s) | 1416 |
| HaeIII | GGCC | 6 cut(s) | 434, 476, 684, 972, 1177, 1896 |
| HapII | CCGG | 4 cut(s) | 125, 1188, 1440, 1773 |
| HgaI | GACGC | 1 cut(s) | 1097 |
| HhaI | GCGC | 5 cut(s) | 77, 448, 612, 1410, 1415 |
| Hin1II | CATG | 6 cut(s) | 695, 970, 984, 1165, 1301, 1396 |
| Hin6I | GCGC | 5 cut(s) | 75, 446, 610, 1408, 1413 |
| HinP1I | GCGC | 5 cut(s) | 75, 446, 610, 1408, 1413 |
| HindIII | AAGCTT | 1 cut(s) | 1763 |
| HpaII | CCGG | 4 cut(s) | 125, 1188, 1440, 1773 |
| HphI | GGTGA | 7 cut(s) | 111, 761, 1454, 1562, 1616, 1631, 1856 |
| Hpy166II | GTNNAC | 3 cut(s) | 48, 883, 1277 |
| Hpy188I | TCNGA | 9 cut(s) | 175, 193, 411, 510, 956, 1157, 1221, 1419, 1877 |
| Hpy8I | GTNNAC | 3 cut(s) | 48, 883, 1277 |
| Hpy99I | CGWCG | 1 cut(s) | 1526 |
| HpyAV | CCTTC | 7 cut(s) | 674, 794, 890, 1043, 1682, 1730, 1883 |
| HpyCH4III | ACNGT | 2 cut(s) | 850, 1502 |
| HpyCH4IV | ACGT | 1 cut(s) | 1378 |
| HpySE526I | ACGT | 1 cut(s) | 1378 |
| Hsp92II | CATG | 6 cut(s) | 695, 970, 984, 1165, 1301, 1396 |
| HspAI | GCGC | 5 cut(s) | 75, 446, 610, 1408, 1413 |
| KpnI | GGTACC | 1 cut(s) | 1188 |
| Ksp22I | TGATCA | 2 cut(s) | 951, 1444 |
| KspI | CCGCGG | 1 cut(s) | 27 |
| LguI | GCTCTTC | 1 cut(s) | 255 |
| LmnI | GCTCC | 4 cut(s) | 712, 1270, 1575, 1644 |
| LweI | GCATC | 4 cut(s) | 528, 557, 1049, 1351 |
| MaeI | CTAG | 4 cut(s) | 12, 369, 734, 903 |
| MaeII | ACGT | 1 cut(s) | 1378 |
| MbiI | CCGCTC | 1 cut(s) | 632 |
| MflI | RGATCY | 3 cut(s) | 206, 1293, 1492 |
| MhlI | GDGCHC | 2 cut(s) | 691, 1279 |
| MlsI | TGGCCA | 2 cut(s) | 476, 1896 |
| MluI | ACGCGT | 1 cut(s) | 1422 |
| MluNI | TGGCCA | 2 cut(s) | 476, 1896 |
| MlyI | GAGTC | 5 cut(s) | 80, 182, 233, 310, 1622 |
| MmeI | TCCRAC | 2 cut(s) | 164, 832 |
| Mox20I | TGGCCA | 2 cut(s) | 476, 1896 |
| MroXI | GAANNNNTTC | 3 cut(s) | 360, 594, 651 |
| MscI | TGGCCA | 2 cut(s) | 476, 1896 |
| MseI | TTAA | 4 cut(s) | 821, 1005, 1638, 1713 |
| MslI | CAYNNNNRTG | 2 cut(s) | 53, 1391 |
| Msp20I | TGGCCA | 2 cut(s) | 476, 1896 |
| MspA1I | CMGCKG | 4 cut(s) | 26, 391, 875, 1025 |
| MspI | CCGG | 4 cut(s) | 125, 1188, 1440, 1773 |
| MspR9I | CCNGG | 6 cut(s) | 478, 913, 1182, 1472, 1488, 1548 |
| MteI | GCGCNGCGC | 1 cut(s) | 1411 |
| Mva1269I | GAATGC | 2 cut(s) | 492, 732 |
| MvaI | CCWGG | 6 cut(s) | 478, 913, 1182, 1472, 1488, 1548 |
| MvnI | CGCG | 7 cut(s) | 26, 75, 91, 612, 657, 1424, 1453 |
| NcoI | CCATGG | 2 cut(s) | 966, 980 |
| NheI | GCTAGC | 1 cut(s) | 368 |
| NlaIII | CATG | 6 cut(s) | 695, 970, 984, 1165, 1301, 1396 |
| NlaIV | GGNNCC | 1 cut(s) | 1186 |
| NmeAIII | GCCGAG | 1 cut(s) | 710 |
| NmuCI | GTSAC | 6 cut(s) | 63, 791, 1137, 1507, 1604, 1668 |
| NruI | TCGCGA | 1 cut(s) | 91 |
| NspV | TTCGAA | 2 cut(s) | 161, 1435 |
| PaeR7I | CTCGAG | 1 cut(s) | 891 |
| PagI | TCATGA | 1 cut(s) | 691 |
| PciSI | GCTCTTC | 1 cut(s) | 255 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1530 |
| PctI | GAATGC | 2 cut(s) | 492, 732 |
| PdmI | GAANNNNTTC | 3 cut(s) | 360, 594, 651 |
| PfeI | GAWTC | 6 cut(s) | 134, 595, 959, 975, 1817, 1872 |
| PflFI | GACNNNGTC | 1 cut(s) | 1460 |
| PinAI | ACCGGT | 1 cut(s) | 1439 |
| PleI | GAGTC | 5 cut(s) | 80, 182, 232, 310, 1622 |
| PpsI | GAGTC | 5 cut(s) | 80, 182, 232, 310, 1622 |
| PpuMI | RGGWCCY | 1 cut(s) | 813 |
| PsiI | TTATAA | 1 cut(s) | 1848 |
| Psp124BI | GAGCTC | 1 cut(s) | 691 |
| Psp5II | RGGWCCY | 1 cut(s) | 813 |
| Psp6I | CCWGG | 6 cut(s) | 476, 911, 1180, 1470, 1486, 1546 |
| PspEI | GGTNACC | 1 cut(s) | 907 |
| PspFI | CCCAGC | 1 cut(s) | 875 |
| PspGI | CCWGG | 6 cut(s) | 476, 911, 1180, 1470, 1486, 1546 |
| PspN4I | GGNNCC | 1 cut(s) | 1186 |
| PspPI | GGNCC | 4 cut(s) | 433, 813, 970, 1175 |
| PspPPI | RGGWCCY | 1 cut(s) | 813 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 62, 94 |
| PstI | CTGCAG | 2 cut(s) | 1030, 1048 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1043, 1511 |
| PsuI | RGATCY | 3 cut(s) | 206, 1293, 1492 |
| PsyI | GACNNNGTC | 1 cut(s) | 1460 |
| PvuII | CAGCTG | 1 cut(s) | 1025 |
| RruI | TCGCGA | 1 cut(s) | 91 |
| RsaI | GTAC | 2 cut(s) | 1186, 1595 |
| RsaNI | GTAC | 2 cut(s) | 1185, 1594 |
| RseI | CAYNNNNRTG | 2 cut(s) | 53, 1391 |
| SacI | GAGCTC | 1 cut(s) | 691 |
| SacII | CCGCGG | 1 cut(s) | 27 |
| SapI | GCTCTTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 4 cut(s) | 821, 1005, 1638, 1713 |
| Sau96I | GGNCC | 4 cut(s) | 433, 813, 970, 1175 |
| SchI | GAGTC | 5 cut(s) | 80, 182, 233, 310, 1622 |
| ScrFI | CCNGG | 6 cut(s) | 478, 913, 1182, 1472, 1488, 1548 |
| SduI | GDGCHC | 2 cut(s) | 691, 1279 |
| SfaNI | GCATC | 4 cut(s) | 528, 557, 1049, 1351 |
| SfcI | CTRYAG | 2 cut(s) | 1026, 1044 |
| Sfr274I | CTCGAG | 1 cut(s) | 891 |
| Sfr303I | CCGCGG | 1 cut(s) | 27 |
| SfuI | TTCGAA | 2 cut(s) | 161, 1435 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1772 |
| SgrBI | CCGCGG | 1 cut(s) | 27 |
| SinI | GGWCC | 1 cut(s) | 813 |
| SlaI | CTCGAG | 1 cut(s) | 891 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 53, 1391 |
| SmlI | CTYRAG | 3 cut(s) | 638, 891, 1574 |
| SmoI | CTYRAG | 3 cut(s) | 638, 891, 1574 |
| SspI | AATATT | 1 cut(s) | 1305 |
| SspMI | CTAG | 4 cut(s) | 12, 369, 734, 903 |
| SstI | GAGCTC | 1 cut(s) | 691 |
| StyD4I | CCNGG | 6 cut(s) | 476, 911, 1180, 1470, 1486, 1546 |
| StyI | CCWWGG | 2 cut(s) | 966, 980 |
| TaaI | ACNGT | 2 cut(s) | 850, 1502 |
| TaiI | ACGT | 1 cut(s) | 1381 |
| TauI | GCSGC | 4 cut(s) | 29, 32, 338, 875 |
| TfiI | GAWTC | 6 cut(s) | 134, 595, 959, 975, 1817, 1872 |
| Tru1I | TTAA | 4 cut(s) | 821, 1005, 1638, 1713 |
| Tru9I | TTAA | 4 cut(s) | 821, 1005, 1638, 1713 |
| TscAI | CASTG | 5 cut(s) | 712, 954, 999, 1507, 1516 |
| TseFI | GTSAC | 6 cut(s) | 63, 791, 1137, 1507, 1604, 1668 |
| Tsp45I | GTSAC | 6 cut(s) | 63, 791, 1137, 1507, 1604, 1668 |
| TspDTI | ATGAA | 6 cut(s) | 369, 516, 708, 1314, 1336, 1368 |
| TspGWI | ACGGA | 3 cut(s) | 574, 599, 1896 |
| TspRI | CASTG | 5 cut(s) | 712, 954, 999, 1507, 1516 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1460 |
| VneI | GTGCAC | 1 cut(s) | 1275 |
| VpaK11BI | GGWCC | 1 cut(s) | 813 |
| XapI | RAATTY | 3 cut(s) | 163, 415, 930 |
| XbaI | TCTAGA | 2 cut(s) | 11, 733 |
| XhoI | CTCGAG | 1 cut(s) | 891 |
| XmnI | GAANNNNTTC | 3 cut(s) | 360, 594, 651 |
| XspI | CTAG | 4 cut(s) | 12, 369, 734, 903 |