Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008485

Physical Location & Seq

Genomic Coordinates Forward (+)

8137357 .. 8139746

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11550.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACCGTTGGAGGTGCTACAGCAGTGGCTGCAGGTGTTTATACAACTAGAGAAGGTTCTAGAGTTATATGGGGATATGTCAACCGCCTGCTAGGGCAGCCATCTCTGATTCGAGAATCATCCATTGCAAGATTTCCAGGTTCAGAGATGCTTTCTCTAGCAAAGAATAAAGTTTTAAATTACAGTACGATGGATCGATCTTCGCAAGGTAAGAATGGTCTTGCAAATATCATTCTCCATCCTTCGTTGCAGAGCAGAATAGAGCACCTTGCTCGAGCTACAGCAAACACTAAGGCTCACCAGGCCCCCTTTCGCAACATGATGTTTTATGGCCCCCCTGGCACTGGTAAAACCATGGTTGCAAGAGAAATAGCTCGAAAATCGGGTTTGGATTATGCTATGATGACTGGAGGAGATGTCGCACCCTTGGGTGCACAGGCTGTTGCTAAGATTCATCAGATATTTGATTGGGCTAAAAATTCCAAAAAAGGTCTACTGCTTTTTATTGACGAGGCAGATGCTTTCCTATGCGAGAGAAACAGTACACACATGAGCGAAGCTCAACGTAGTGCTCTAAATGCATTGCTCTTCCGAACTGGAGACCAATCAAGAGACATCGTTCTAGTACTTGCCACAAACAGGCCAGGAGATCTTGACAGCGCTATCACTGACAGGATGGATGAAGTGATTGAGTTCCCACTTCCTGGAGAGGAGGAACGATTCAAACTTTTGAAGCTATATTTGAACAAATATCTTGGCGATGAAGGCAAAAGCTCCAAGTCAGGCATTTTCCTCAGGAAGAAACCTCAAAAGATTGTGATAAAGGATGTGTCTGATGATCTGATCCGAGAGGCTGCACGTAAGACAGAAGGGTTCTCTGGCCGTGAGATAGCTAAACTCATGGCCAGTGTCCAAGCAGCCGTGTATGGACGCGAAGACTGTGTACTGGATTCGCAATTGTTTGAGGAAATTGTAGATTATAAAGTTACAGAGCACCACCAAAGAATGAAACTAGCAGCTGAAGGTGGTCATCCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA DUF3523

Protein Analysis

347

Amino Acids

38.13

Weight (kDa)

9.13

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18330 AT4G36580
fragaria_vesca	FvH4_1g13120 FvH4_1g13120 FvH4_1g13120
malus_domestica	MD02G1145900.v1.1 MD15G1260100.v1.1
prunus_persica	Prupe.7G156000_v2.0.a1 Prupe.7G156000_v2.0.a1
pyrus_communis	pycom02g11540 pycom02g11550 pycom15g22750
rosa_chinensis	RchiOBHm_Chr2g0101291
rosa_laevigata	RLG00000017067
rosa_multiflora	Rmu_co8334191.1_g000001 Rmu_sc0006128.1_g000022
rosa_roxburghii	Rroxscaffold_2G00141430
rosa_rugosa	Rorug02G0099300
rosa_samantha	Rh2AG145800 Rh2BG151200 Rh2CG151700 Rh2DG151300
rosa_wichuraiana	Rw2G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	981
AarI	CACCTGC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	704
AccI	GTMKAC	1 cut(s)	493
AccII	CGCG	1 cut(s)	933
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	2 cut(s)	201, 838
AcoI	YGGCCR	2 cut(s)	880, 903
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	1041
AfaI	GTAC	4 cut(s)	187, 544, 627, 945
AfeI	AGCGCT	1 cut(s)	661
AfiI	CCNNNNNNNGG	3 cut(s)	344, 639, 704
AgsI	TTSAA	3 cut(s)	724, 733, 745
AjnI	CCWGG	5 cut(s)	136, 300, 337, 643, 703
AluBI	AGCT	7 cut(s)	278, 374, 560, 736, 774, 893, 1019
AluI	AGCT	7 cut(s)	278, 374, 560, 736, 774, 893, 1019
Alw21I	GWGCWC	4 cut(s)	267, 436, 574, 996
Alw26I	GTCTC	2 cut(s)	594, 606
Alw44I	GTGCAC	1 cut(s)	432
AlwI	GGATC	2 cut(s)	201, 838
AlwNI	CAGNNNCTG	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	273
Aor51HI	AGCGCT	1 cut(s)	661
AoxI	GGCC	5 cut(s)	303, 331, 641, 880, 903
ApaLI	GTGCAC	1 cut(s)	432
ApeKI	GCWGC	5 cut(s)	29, 97, 854, 917, 1016
ApoI	RAATTY	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	662
AspS9I	GGNCC	2 cut(s)	304, 332
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	273
AxyI	CCTNAGG	1 cut(s)	794
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	905
BarI	GAAGNNNNNNTAC	2 cut(s)	927, 959
BbsI	GAAGAC	1 cut(s)	942
Bbv12I	GWGCWC	4 cut(s)	267, 436, 574, 996
BbvI	GCAGC	5 cut(s)	16, 109, 841, 929, 1028
BccI	CCATC	4 cut(s)	109, 184, 246, 670
BceAI	ACGGC	2 cut(s)	867, 905
BcgI	CGANNNNNNTGC	4 cut(s)	254, 288, 500, 534
BciT130I	CCWGG	5 cut(s)	138, 302, 339, 645, 705
BcoDI	GTCTC	2 cut(s)	594, 606
BfaI	CTAG	6 cut(s)	48, 60, 92, 158, 623, 1013
BfmI	CTRYAG	3 cut(s)	18, 30, 279
BfoI	RGCGCY	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	5 cut(s)	30, 98, 855, 918, 1017
BlsI	GCNGC	5 cut(s)	31, 99, 856, 919, 1018
BmcAI	AGTACT	1 cut(s)	627
Bme1390I	CCNGG	5 cut(s)	138, 302, 339, 645, 705
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	304, 332
BmiI	GGNNCC	2 cut(s)	306, 334
BmrFI	CCNGG	5 cut(s)	138, 302, 339, 645, 705
BmsI	GCATC	2 cut(s)	138, 508
BpiI	GAAGAC	1 cut(s)	942
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpmI	CTGGAG	3 cut(s)	429, 618, 726
Bsa29I	ATCGAT	1 cut(s)	196
BsaAI	YACGTR	1 cut(s)	860
BsaI	GGTCTC	1 cut(s)	594
BsaJI	CCNNGG	3 cut(s)	337, 354, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 639, 704
Bse1I	ACTGG	5 cut(s)	349, 412, 601, 906, 951
Bse21I	CCTNAGG	1 cut(s)	794
Bse3DI	GCAATG	2 cut(s)	123, 581
BseBI	CCWGG	5 cut(s)	138, 302, 339, 645, 705
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	337, 354, 426
BseGI	GGATG	6 cut(s)	119, 238, 681, 685, 832, 1030
BseLI	CCNNNNNNNGG	3 cut(s)	344, 639, 704
BseMI	GCAATG	2 cut(s)	123, 581
BseMII	CTCAG	1 cut(s)	808
BseNI	ACTGG	5 cut(s)	349, 412, 601, 906, 951
BseRI	GAGGAG	2 cut(s)	426, 725
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	5 cut(s)	16, 109, 841, 929, 1028
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	933
BshFI	GGCC	5 cut(s)	305, 333, 643, 882, 905
BshVI	ATCGAT	1 cut(s)	196
BsiHKAI	GWGCWC	4 cut(s)	267, 436, 574, 996
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	1034
BslI	CCNNNNNNNGG	3 cut(s)	344, 639, 704
BsmAI	GTCTC	2 cut(s)	594, 606
BsnI	GGCC	5 cut(s)	305, 333, 643, 882, 905
Bso31I	GGTCTC	1 cut(s)	594
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	4 cut(s)	267, 436, 574, 996
Bsp143I	GATC	5 cut(s)	193, 197, 649, 838, 843
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	5 cut(s)	305, 333, 643, 882, 905
BspCNI	CTCAG	1 cut(s)	807
BspDI	ATCGAT	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	933
BspLI	GGNNCC	2 cut(s)	306, 334
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	2 cut(s)	201, 838
BspQI	GCTCTTC	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	594
BsrDI	GCAATG	2 cut(s)	123, 581
BsrI	ACTGG	5 cut(s)	349, 412, 601, 906, 951
BssECI	CCNNGG	3 cut(s)	337, 354, 426
BssMI	GATC	5 cut(s)	193, 197, 649, 838, 843
BssT1I	CCWWGG	2 cut(s)	354, 426
Bst2UI	CCWGG	5 cut(s)	138, 302, 339, 645, 705
Bst4CI	ACNGT	4 cut(s)	7, 185, 542, 941
Bst6I	CTCTTC	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	860
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	4 cut(s)	291, 447, 794, 1038
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	6 cut(s)	119, 238, 681, 685, 832, 1030
BstFNI	CGCG	1 cut(s)	933
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	5 cut(s)	196, 200, 652, 841, 846
BstMAI	GTCTC	2 cut(s)	594, 606
BstMBI	GATC	5 cut(s)	193, 197, 649, 838, 843
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 97, 302, 339, 578, 765
BstNI	CCWGG	5 cut(s)	138, 302, 339, 645, 705
BstSCI	CCNGG	5 cut(s)	136, 300, 337, 643, 703
BstSFI	CTRYAG	3 cut(s)	18, 30, 279
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	933
BstV1I	GCAGC	5 cut(s)	16, 109, 841, 929, 1028
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
Bsu15I	ATCGAT	1 cut(s)	196
Bsu36I	CCTNAGG	1 cut(s)	794
BsuRI	GGCC	5 cut(s)	305, 333, 643, 882, 905
BsuTUI	ATCGAT	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	774
BtsCI	GGATG	6 cut(s)	119, 238, 681, 685, 832, 1030
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	4 cut(s)	30, 342, 666, 913
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	29
CfoI	GCGC	1 cut(s)	662
Cfr13I	GGNCC	2 cut(s)	304, 332
ClaI	ATCGAT	1 cut(s)	196
CseI	GACGC	1 cut(s)	939
Csp6I	GTAC	4 cut(s)	186, 543, 626, 944
CviAII	CATG	4 cut(s)	319, 355, 550, 901
CviQI	GTAC	4 cut(s)	186, 543, 626, 944
DdeI	CTNAG	4 cut(s)	291, 447, 794, 1038
DpnI	GATC	5 cut(s)	195, 199, 651, 840, 845
DpnII	GATC	5 cut(s)	193, 197, 649, 838, 843
DraI	TTTAAA	1 cut(s)	177
EaeI	YGGCCR	2 cut(s)	880, 903
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Eco130I	CCWWGG	2 cut(s)	354, 426
Eco31I	GGTCTC	1 cut(s)	594
Eco47III	AGCGCT	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	1041
Eco81I	CCTNAGG	1 cut(s)	794
Eco88I	CYCGRG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	5 cut(s)	136, 300, 337, 643, 703
EcoT14I	CCWWGG	2 cut(s)	354, 426
EcoT22I	ATGCAT	1 cut(s)	583
ErhI	CCWWGG	2 cut(s)	354, 426
FaeI	CATG	4 cut(s)	322, 358, 553, 904
FatI	CATG	4 cut(s)	318, 354, 549, 900
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	30, 98, 855, 918, 1017
FokI	GGATG	6 cut(s)	106, 225, 688, 692, 839, 1017
Fsp4HI	GCNGC	5 cut(s)	30, 98, 855, 918, 1017
FspBI	CTAG	6 cut(s)	48, 60, 92, 158, 623, 1013
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	5 cut(s)	30, 98, 855, 918, 1017
GsuI	CTGGAG	3 cut(s)	429, 618, 726
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	5 cut(s)	305, 333, 643, 882, 905
HapII	CCGG	1 cut(s)	1034
HgaI	GACGC	1 cut(s)	939
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	4 cut(s)	322, 358, 553, 904
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	5 cut(s)	109, 116, 451, 720, 950
HpaII	CCGG	1 cut(s)	1034
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	5 cut(s)	82, 434, 494, 545, 944
Hpy188I	TCNGA	7 cut(s)	108, 145, 459, 593, 835, 843, 848
Hpy188III	TCNNGA	5 cut(s)	60, 113, 609, 653, 796
Hpy8I	GTNNAC	5 cut(s)	82, 434, 494, 545, 944
HpyAV	CCTTC	5 cut(s)	47, 252, 758, 863, 1016
HpyCH4III	ACNGT	4 cut(s)	7, 185, 542, 941
HpyCH4IV	ACGT	2 cut(s)	565, 859
HpyCH4V	TGCA	8 cut(s)	32, 128, 224, 250, 362, 434, 581, 857
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 97, 302, 339, 578, 765
HpyF3I	CTNAG	4 cut(s)	291, 447, 794, 1038
HpySE526I	ACGT	2 cut(s)	565, 859
Hsp92II	CATG	4 cut(s)	322, 358, 553, 904
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	5 cut(s)	193, 197, 649, 838, 843
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	1 cut(s)	779
Lsp1109I	GCAGC	5 cut(s)	16, 109, 841, 929, 1028
LweI	GCATC	2 cut(s)	138, 508
MaeI	CTAG	6 cut(s)	48, 60, 92, 158, 623, 1013
MaeII	ACGT	2 cut(s)	565, 859
MaeIII	GTNAC	1 cut(s)	985
MalI	GATC	5 cut(s)	195, 199, 651, 840, 845
MboI	GATC	5 cut(s)	193, 197, 649, 838, 843
MboII	GAAGA	4 cut(s)	192, 580, 811, 947
MfeI	CAATTG	1 cut(s)	956
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	4 cut(s)	267, 436, 574, 996
MlsI	TGGCCA	1 cut(s)	905
MluCI	AATT	4 cut(s)	178, 478, 956, 969
MluNI	TGGCCA	1 cut(s)	905
MnlI	CCTC	9 cut(s)	5, 404, 505, 703, 706, 803, 816, 844, 958
Mox20I	TGGCCA	1 cut(s)	905
Mph1103I	ATGCAT	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	905
MseI	TTAA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	905
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	1 cut(s)	1034
MspR9I	CCNGG	5 cut(s)	138, 302, 339, 645, 705
MunI	CAATTG	1 cut(s)	956
MvaI	CCWGG	5 cut(s)	138, 302, 339, 645, 705
MvnI	CGCG	1 cut(s)	933
MwoI	GCNNNNNNNGC	6 cut(s)	29, 97, 302, 339, 578, 765
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	5 cut(s)	193, 197, 649, 838, 843
NlaIII	CATG	4 cut(s)	322, 358, 553, 904
NlaIV	GGNNCC	2 cut(s)	306, 334
NsiI	ATGCAT	1 cut(s)	583
PaeR7I	CTCGAG	1 cut(s)	273
PaqCI	CACCTGC	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	593
PfeI	GAWTC	5 cut(s)	109, 116, 451, 720, 950
PflMI	CCANNNNNTGG	1 cut(s)	704
PfoI	TCCNGGA	1 cut(s)	703
PkrI	GCNGC	5 cut(s)	31, 99, 856, 919, 1018
Ppu21I	YACGTR	1 cut(s)	860
PsiI	TTATAA	1 cut(s)	981
Psp6I	CCWGG	5 cut(s)	136, 300, 337, 643, 703
PspGI	CCWGG	5 cut(s)	136, 300, 337, 643, 703
PspN4I	GGNNCC	2 cut(s)	306, 334
PspPI	GGNCC	2 cut(s)	304, 332
PspXI	VCTCGAGB	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	649
PvuII	CAGCTG	1 cut(s)	1019
RsaI	GTAC	4 cut(s)	187, 544, 627, 945
RsaNI	GTAC	4 cut(s)	186, 543, 626, 944
SapI	GCTCTTC	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	5 cut(s)	30, 98, 855, 918, 1017
Sau3AI	GATC	5 cut(s)	193, 197, 649, 838, 843
Sau96I	GGNCC	2 cut(s)	304, 332
ScaI	AGTACT	1 cut(s)	627
ScrFI	CCNGG	5 cut(s)	138, 302, 339, 645, 705
SduI	GDGCHC	4 cut(s)	267, 436, 574, 996
SfaNI	GCATC	2 cut(s)	138, 508
SfcI	CTRYAG	3 cut(s)	18, 30, 279
Sfr274I	CTCGAG	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	4 cut(s)	178, 478, 956, 969
SsiI	CCGC	1 cut(s)	85
SspMI	CTAG	6 cut(s)	48, 60, 92, 158, 623, 1013
StyD4I	CCNGG	5 cut(s)	136, 300, 337, 643, 703
StyI	CCWWGG	2 cut(s)	354, 426
TaaI	ACNGT	4 cut(s)	7, 185, 542, 941
TaiI	ACGT	2 cut(s)	568, 862
TaqI	TCGA	4 cut(s)	112, 196, 274, 376
TasI	AATT	4 cut(s)	178, 478, 956, 969
TatI	WGTACW	3 cut(s)	542, 625, 943
TfiI	GAWTC	5 cut(s)	109, 116, 451, 720, 950
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TscAI	CASTG	4 cut(s)	30, 349, 673, 913
TseI	GCWGC	5 cut(s)	29, 97, 854, 917, 1016
TspDTI	ATGAA	4 cut(s)	443, 696, 777, 1022
TspRI	CASTG	4 cut(s)	30, 349, 673, 913
Van91I	CCANNNNNTGG	1 cut(s)	704
VneI	GTGCAC	1 cut(s)	432
XapI	RAATTY	1 cut(s)	478
XbaI	TCTAGA	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	493
XspI	CTAG	6 cut(s)	48, 60, 92, 158, 623, 1013
ZrmI	AGTACT	1 cut(s)	627
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.