Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008485

Physical Location & Seq

Genomic Coordinates Forward (+)

8134950 .. 8136825

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGTTGCTGCCTCGAAGCTATCTTCATGCATAGCAATGGCAGTCGCGGCTGTCTCCATGCCCGCGCTCTCCAACCGCGCCTACGCCGACTCTCCCTTCCGATTTAATCCGTTCTCGTACTCTTCTCCTTCTCCTCCTCCGCCTTCTGCCGCTCGTGCGGACCAGAGCCCCAATGCGAAATCGGAACCGCAAGCTGAAGAGCCCAGAGGGTCGGGGTTCGATCCCGAGGCTCTCGAACGAGGTGCCAAAGCTCTCCGCGAAATCAATTCCTCTAAATTATCGAAGCAGGTTTTTAGTCTGATGAGGAGCCAGGAAAAAAGTCGCCTCACTGAGTTGGAAGCGGAGAAGGCTCATTTTGAAGCAATACAGGCTCAAAATGATCTTGAAAGGAGTAAGAACATGGCTGAGGAACAACTAAATATACTGCAACAAGAAGCACAGGCAAAGGCTCAAATGCTTCGTATGGAAGATGAACATGCGAGGAATAGAATGAAGATGGATCATGAAAAGCAGAGGCAGAATAATGCTGAAATGCTTAGGATGCAAGAGGAGTCAAATATCCGAAAAGAGAGAGCAAGACTTGCTACTGAGGCACAGAAGCAAGAGCAGCAGCGCCAAACTGAAAGAGAGAAACATGAATTAGAACTAAAAAACATAGAAGCAGAAGCCATTGCAAATGCTAAAGGTCGGGCCCATGAAGCAAAACTGAATGCAGAACTTAACAGGAATATGCTTCTAGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA DUF3523

Protein Analysis

249

Amino Acids

28.1

Weight (kDa)

7.0

Isoelectric Point (pI)

69.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18330 AT4G36580
fragaria_vesca	FvH4_1g13120 FvH4_1g13120 FvH4_1g13120
malus_domestica	MD02G1145900.v1.1 MD15G1260100.v1.1
prunus_persica	Prupe.7G156000_v2.0.a1 Prupe.7G156000_v2.0.a1
pyrus_communis	pycom02g11540 pycom02g11550 pycom15g22750
rosa_chinensis	RchiOBHm_Chr2g0101291
rosa_laevigata	RLG00000017067
rosa_multiflora	Rmu_co8334191.1_g000001 Rmu_sc0006128.1_g000022
rosa_roxburghii	Rroxscaffold_2G00141430
rosa_rugosa	Rorug02G0099300
rosa_samantha	Rh2AG145800 Rh2BG151200 Rh2CG151700 Rh2DG151300
rosa_wichuraiana	Rw2G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	152
AccII	CGCG	4 cut(s)	47, 65, 78, 258
AciI	CCGC	9 cut(s)	47, 63, 76, 140, 150, 158, 188, 256, 341
AclWI	GGATC	2 cut(s)	215, 507
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	359, 386
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	19, 194, 251
AluI	AGCT	3 cut(s)	19, 194, 251
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	2 cut(s)	215, 507
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	690
ApaI	GGGCCC	1 cut(s)	694
ApeKI	GCWGC	3 cut(s)	8, 607, 610
AspLEI	GCGC	3 cut(s)	67, 80, 615
AspS9I	GGNCC	3 cut(s)	160, 690, 691
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	3 cut(s)	170, 204, 694
BauI	CACGAG	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	619, 622
BccI	CCATC	1 cut(s)	490
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	737
BfoI	RGCGCY	1 cut(s)	616
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	5 cut(s)	9, 48, 150, 608, 611
BlsI	GCNGC	5 cut(s)	10, 49, 151, 609, 612
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	3 cut(s)	160, 690, 691
BmiI	GGNNCC	4 cut(s)	186, 244, 308, 692
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	1 cut(s)	531
Bpu10I	CCTNAGC	2 cut(s)	405, 536
Bsa29I	ATCGAT	1 cut(s)	742
BsaJI	CCNNGG	1 cut(s)	225
Bse3DI	GCAATG	2 cut(s)	42, 669
BseBI	CCWGG	1 cut(s)	311
BseCI	ATCGAT	1 cut(s)	742
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	546
BseMI	GCAATG	2 cut(s)	42, 669
BseMII	CTCAG	3 cut(s)	321, 396, 579
BseRI	GAGGAG	4 cut(s)	123, 126, 319, 563
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	2 cut(s)	619, 622
Bsh1236I	CGCG	4 cut(s)	47, 65, 78, 258
BshFI	GGCC	1 cut(s)	692
BshNI	GGYRCC	1 cut(s)	242
BshVI	ATCGAT	1 cut(s)	742
BsiHKCI	CYCGRG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	1 cut(s)	692
BsoBI	CYCGRG	1 cut(s)	224
Bsp120I	GGGCCC	1 cut(s)	690
Bsp1286I	GDGCHC	3 cut(s)	170, 204, 694
Bsp143I	GATC	4 cut(s)	220, 379, 499, 739
BspACI	CCGC	9 cut(s)	47, 63, 76, 140, 150, 158, 188, 256, 341
BspANI	GGCC	1 cut(s)	692
BspCNI	CTCAG	3 cut(s)	322, 397, 580
BspDI	ATCGAT	1 cut(s)	742
BspFNI	CGCG	4 cut(s)	47, 65, 78, 258
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	4 cut(s)	186, 244, 308, 692
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	215, 507
BspQI	GCTCTTC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	42, 669
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	4 cut(s)	220, 379, 499, 739
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	311
Bst6I	CTCTTC	2 cut(s)	127, 192
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	2 cut(s)	63, 192
BstDEI	CTNAG	4 cut(s)	330, 405, 536, 588
BstF5I	GGATG	1 cut(s)	546
BstFNI	CGCG	4 cut(s)	47, 65, 78, 258
BstH2I	RGCGCY	1 cut(s)	616
BstHHI	GCGC	3 cut(s)	67, 80, 615
BstKTI	GATC	4 cut(s)	223, 382, 502, 742
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	4 cut(s)	220, 379, 499, 739
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 155, 347, 368, 541, 581, 590, 607, 698
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	694
BstUI	CGCG	4 cut(s)	47, 65, 78, 258
BstV1I	GCAGC	2 cut(s)	619, 622
Bsu15I	ATCGAT	1 cut(s)	742
BsuRI	GGCC	1 cut(s)	692
BsuTUI	ATCGAT	1 cut(s)	742
BtsCI	GGATG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	2 cut(s)	63, 192
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	3 cut(s)	67, 80, 615
Cfr13I	GGNCC	3 cut(s)	160, 690, 691
ClaI	ATCGAT	1 cut(s)	742
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	7 cut(s)	27, 58, 400, 476, 503, 635, 695
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	4 cut(s)	330, 405, 536, 588
DpnI	GATC	4 cut(s)	222, 381, 501, 741
DpnII	GATC	4 cut(s)	220, 379, 499, 739
Eam1104I	CTCTTC	2 cut(s)	127, 192
EarI	CTCTTC	2 cut(s)	127, 192
EciI	GGCGGA	1 cut(s)	129
Eco24I	GRGCYC	3 cut(s)	170, 204, 694
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	32
EcoT38I	GRGCYC	3 cut(s)	170, 204, 694
FaeI	CATG	7 cut(s)	30, 61, 403, 479, 506, 638, 698
FatI	CATG	7 cut(s)	26, 57, 399, 475, 502, 634, 694
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	5 cut(s)	9, 48, 150, 608, 611
FokI	GGATG	1 cut(s)	553
FriOI	GRGCYC	3 cut(s)	170, 204, 694
Fsp4HI	GCNGC	5 cut(s)	9, 48, 150, 608, 611
FspBI	CTAG	1 cut(s)	737
GlaI	GCGC	3 cut(s)	66, 79, 614
GluI	GCNGC	5 cut(s)	9, 48, 150, 608, 611
HaeII	RGCGCY	1 cut(s)	616
HaeIII	GGCC	1 cut(s)	692
HhaI	GCGC	3 cut(s)	67, 80, 615
Hin1II	CATG	7 cut(s)	30, 61, 403, 479, 506, 638, 698
Hin6I	GCGC	3 cut(s)	65, 78, 613
HinP1I	GCGC	3 cut(s)	65, 78, 613
HinfI	GANTC	2 cut(s)	89, 551
Hpy188I	TCNGA	4 cut(s)	101, 184, 300, 563
Hpy188III	TCNNGA	5 cut(s)	224, 233, 383, 503, 737
HpyAV	CCTTC	4 cut(s)	106, 138, 153, 340
HpyCH4V	TGCA	5 cut(s)	30, 427, 544, 674, 713
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 155, 347, 368, 541, 581, 590, 607, 698
HpyF3I	CTNAG	4 cut(s)	330, 405, 536, 588
Hsp92II	CATG	7 cut(s)	30, 61, 403, 479, 506, 638, 698
HspAI	GCGC	3 cut(s)	65, 78, 613
Kzo9I	GATC	4 cut(s)	220, 379, 499, 739
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	8 cut(s)	176, 217, 272, 296, 323, 353, 425, 709
Lsp1109I	GCAGC	2 cut(s)	619, 622
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	1 cut(s)	737
MalI	GATC	4 cut(s)	222, 381, 501, 741
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	4 cut(s)	220, 379, 499, 739
MboII	GAAGA	5 cut(s)	15, 114, 209, 479, 505
MhlI	GDGCHC	3 cut(s)	170, 204, 694
MluCI	AATT	3 cut(s)	265, 275, 638
MlyI	GAGTC	2 cut(s)	83, 560
MmeI	TCCRAC	2 cut(s)	96, 315
Mph1103I	ATGCAT	1 cut(s)	32
MseI	TTAA	2 cut(s)	105, 720
MslI	CAYNNNNRTG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	4 cut(s)	47, 65, 78, 258
MwoI	GCNNNNNNNGC	9 cut(s)	47, 155, 347, 368, 541, 581, 590, 607, 698
NdeII	GATC	4 cut(s)	220, 379, 499, 739
NlaIII	CATG	7 cut(s)	30, 61, 403, 479, 506, 638, 698
NlaIV	GGNNCC	4 cut(s)	186, 244, 308, 692
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	479
PagI	TCATGA	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	192
PctI	GAATGC	1 cut(s)	715
PkrI	GCNGC	5 cut(s)	10, 49, 151, 609, 612
PleI	GAGTC	2 cut(s)	83, 559
PpsI	GAGTC	2 cut(s)	83, 559
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	186, 244, 308, 692
PspOMI	GGGCCC	1 cut(s)	690
PspPI	GGNCC	3 cut(s)	160, 690, 691
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	105, 720
SatI	GCNGC	5 cut(s)	9, 48, 150, 608, 611
Sau3AI	GATC	4 cut(s)	220, 379, 499, 739
Sau96I	GGNCC	3 cut(s)	160, 690, 691
SchI	GAGTC	2 cut(s)	83, 560
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	3 cut(s)	170, 204, 694
SetI	ASST	6 cut(s)	21, 196, 244, 253, 291, 688
SfaNI	GCATC	1 cut(s)	531
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	265, 275, 638
SsiI	CCGC	9 cut(s)	47, 63, 76, 140, 150, 158, 188, 256, 341
SspMI	CTAG	1 cut(s)	737
StyD4I	CCNGG	1 cut(s)	309
TaqI	TCGA	5 cut(s)	14, 219, 234, 281, 742
TasI	AATT	3 cut(s)	265, 275, 638
TauI	GCSGC	2 cut(s)	50, 152
Tru1I	TTAA	2 cut(s)	105, 720
Tru9I	TTAA	2 cut(s)	105, 720
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	3 cut(s)	8, 607, 610
TspDTI	ATGAA	6 cut(s)	15, 486, 506, 519, 651, 711
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	160
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	1 cut(s)	737
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.